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dnarnaresearch.bsky.social

@dnarnaresearch.bsky.social
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German Society for Plant Sciences (DBG) @plantsciencedbg.bsky.social · 06/10/2026
„Without funding of basic research – which is the advantage of doing research in Germany – our discoveries would not have been possible”, Nobel Prize laureate 2026 Peter Hagemann points out in German news @heutejournal.bsky.social (starting at 19:00 minutes) – in German www.zdf.de/play/magazin...
zdf.de
heute journal vom 5. Oktober 2026
Mit den Themen: „Gewaltsamer Konflikt“ - BND-Chef warnt vor Russland; Vorgezogene Neuwahlen - Spaniens Sánchez sucht Mehrheiten; Verdrängte Geschichte - Shida Bazyar erhält Deutschen Buchpreis
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Dr Darren Abbey @thebiologistisn.bsky.social · 03/10/2026
My lima bean harvest for the day. The later harvested magenta type in the middle look more of a lavender tone. A few pods had distinctly brighter seeds. I'll compare these to earlier harvested seeds from the same type.
Lima beans sorted by color. At the top is a pile of bright yellow seeds. In the middle is a pile of lavender seeds. At the bottom are two small piles of brighter magenta-red seeds.
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Boas Pucker @bpucker.bsky.social · 27/09/2026
Human design or AI-generated? 🤖🎨 With AI-generated images everywhere, we get this question a lot! The figures in our publications are designed by a talented human: Marie. 🌱✨✏️🧠🌿 👉 See her work: www.izmb.uni-bonn.de/en/pbb/mh 📖 Example: doi.org/10.1111/tpj.... #SciArt #SciComm @puckerlab.bsky.social
Pathway illustration for the anthocyanin and carotenoid biosynthesis. Figure source and details: https://doi.org/10.1111/tpj.71136.
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Boas Pucker @bpucker.bsky.social · 26/09/2026
Excited to share our new paper is out in TPJ! 🌱 "Out of the blue: family-wide loss of anthocyanin biosynthesis in Cucurbitaceae" We explore the anthocyanin biosynthesis gene loss through comparative genomics: doi.org/10.1111/tpj.... @nancy-choudhary.bsky.social @puckerlab.bsky.social #Evolution
Synteny analysis supports the loss of crucial genes in the anthocyanin biosynthesis across Cucurbitaceae. Details and figure reference: https://doi.org/10.1111/tpj.71136
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Sophien Kamoun @kamounlab.bsky.social · 14/09/2026
We just published: Fold on Tight — 10 lessons on AI structure prediction Andy Posbe @adnroide.bsky.social turned our ten lessons on AI structure prediction into a thread. Here it is, one lesson at a time. kamounlab.medium.com/fold-on-tigh...
kamounlab.medium.com
Fold on Tight — 10 lessons on AI structure prediction
Andy Posbe turned our ten lessons on AI structure prediction into a thread. Here it is, one lesson at a time.
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Boas Pucker @bpucker.bsky.social · 14/09/2026
Julie just completed sequencing run 200 on our PromethION @puckerlab.bsky.social . Time to celebrate numerous successful plant genomics projects and to look for new challenges! www.izmb.uni-bonn.de/en/pbb/news#... #PlantGenomics #Bioinformatics #LongReads
Julie and P2 Solo
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Glen Grambo 🇨🇦 @glengrambo.bsky.social · 12/09/2026
So this photo contains zero birds, but in my defence, we were sitting outside waiting for birds. But the sun was almost setting and the backlit Snapdragons stole the show!
A backlit  snapdragon flower that is partially opened. The background is dark green with a round sun like highlight in the top right corner. It’s actually an out of focus highlight that appears large because it’s a telephoto lens. The pink snapdragon flower is rim lit but has some light bouncing back to light the flower. 
For those interested, the lens is a 400mm and required 5 frames focused on slightly different  parts of the flower to be stacked together so the entire flower was sharp .
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German Society for Plant Sciences (DBG) @plantsciencedbg.bsky.social · 10/09/2026
The next Botanik-Tagung will take place in Göttingen, Germany, from 17th to 21st September 2028. Hope to see you all there!
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German Society for Plant Sciences (DBG) @plantsciencedbg.bsky.social · 11/09/2026
Review paper What we know, what we assume + what remains unknown from anthocyanin research. By @nancy-choudhary.bsky.social, N. Khatun, and @bpucker.bsky.social Read more #OpenAccess in our Journal #PlantBiology @Wileyplantsci #PlantSci DOI: doi.org/10.1111/plb....
doi.org
Almost 200 years of anthocyanin research: What we know, what we assume and what remains unknown
Nearly 200 years of anthocyanin research reveal a well-understood anthocyanin biosynthetic pathway. However, there are still open questions regarding its evolution, functions and ecological significa...
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Boas Pucker @bpucker.bsky.social · 11/09/2026
Activation of anthocyanin biosynthesis in Utricularia gibba depends on nitrogen starvation and light exposure #FlavonoidFriday doi.org/10.64898/202... & shorturl.at/Be9T2
Utricularia gibba traps exhibiting red coloration, presumably due to anthocyanin accumulation. Reference: https://doi.org/10.64898/2026.08.27.747637
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Boas Pucker @bpucker.bsky.social · 30/08/2026
We went on a boat trip to collect samples of aquatic carnivorous plants (Utricularia). Excited to learn more about these fascinating plants? Check out our latest preprint: doi.org/10.64898/202... #PlantSciences #Genomics #TeamWork @puckerlab.bsky.social
PuckerLab boat trip 2026. Details about our research: https://doi.org/10.64898/2026.08.27.747637
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PuckerLab @puckerlab.bsky.social · 02/09/2026
Are you interested in gene expression? We have just released PanXpresso - a large collection of precomputed gene expression datasets for plants, animals, fungi, bacteria, and archaea: doi.org/10.64898/202... #RNAseq #Transcriptomics #Python @shakunthalan.bsky.social @bpucker.bsky.social
Phylogenetic tree showing the distribution of gene expression datasets across plant families. Source: https://doi.org/10.64898/2026.08.27.747620
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Botanical Society of America @botsocamerica.bsky.social · 26/08/2026
Check out these highlights from the latest American Journal of #Botany! botany.org/file.php?fil... Find the issue Table of Contents at bsapubs.onlinelibrary.wiley.com/toc/15372197.... #plantscience
The coastal perennial ecotype of Mimulus guttatus DC. (syn. Erythranthe
guttata DC.) growing on a cliff at Montara State Beach, Montara, California, USA, with oceanic salt spray damage on the leaf margin.
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KWS Group @kwsgroup.bsky.social · 26/08/2026
🌱 New research from @mpipz.bsky.social reveals key mechanisms that suppress genetic recombination near centromeres. The findings could open new possibilities for accessing genetic variation in regions that are typically inaccessible to plant breeding. www.nature.com/articles/s41...
nature.com
The deSUMOylase SPF2 and the cohesin regulators SGO2 and CTF18 suppress crossovers near centromeres - Nature Plants
Gamboa et al. identified three proteins that restrict meiotic crossovers near centromeres. This finding suggests that cohesion regulation plays a role in this suppression and creates opportunities to ...
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ERGA - European Reference Genome Atlas @ergabiodiv.bsky.social · 26/08/2026
Bulgaria at center stage of Lepidoptera Genomics 🦋 From 15–19 June 2026, Vlahi in Bulgaria's Kresna Gorge hosted a first-of-its-kind expedition: 50+ entomologists, genomics experts & conservationists from 17 countries gathered to collect specimens for sequencing Europe's butterflies and moths 🧵
Photo by Stoyan BeshkovPhoto by Stoyan BeshkovPhoto by Sara La Cava
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Plant Physiology @plantphys.bsky.social · 26/08/2026
Palette—a system for visualizing the expression levels of target genes in orchids (Zhenyu Yang , Su Ni , Qiyu Zhang , et al) doi.org/10.1093/plph... #PlantScience @aspbofficial
doi.org
Palette—a system for visualizing the expression levels of target genes in orchids
By blending two types of plant pigments like an artist mixing colors on a palette to create new flower colors using multiple genetic transformation methods
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Galaxy Project @galaxyproject.bsky.social · 26/08/2026
📢 Earlham Institute is hiring a **DevOps Engineer** for the BioFAIR Methods Commons! Help build and operate the infrastructure behind a national UK Galaxy service for life science research. 📅 Apply by Sept. 22 www.earlham.ac.uk/vacancy/devo... #UseGalaxy #DevOps
earlham.ac.uk
DevOps Engineer (BioFAIR Methods Commons)
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Earth BioGenome Project 🌍 @ebpgenome.bsky.social · 26/08/2026
🧬🌿 Why sequence an entire ecosystem? No species exists in isolation. Plants, animals, fungi and microbes are connected through complex ecological networks. Sequencing across ecosystems can help us understand not just what lives there — but how life works together. #Genomics #Biodiversity
Alt text: A lush pond surrounded by ferns, reeds, moss, and other vegetation, with sunlight reflecting off the water. Overlaid text reads, “Why sequence an entire ecosystem?” with “ecosystem” highlighted in yellow.Alt text: A collage showing the biodiversity of a pond ecosystem, including water lilies, damselflies, snails, duckweed, reeds, a frog, a duck, microscopic algae, and a mayfly. Overlaid text reads, “A pond isn’t one organism. It’s a living network.”
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Boas Pucker @bpucker.bsky.social · 10/08/2026
It was a pleasure to recently give talks and meet with researchers working on exciting questions in plant sciences. My talks included “Addressing the Functional Annotation Bottleneck in Plant Genomics” and “Evolutionary Ups and Downs of Anthocyanin Biosynthesis”. #Genomics #Bioinformatics #Evolution
Title slides of “Addressing the Functional Annotation Bottleneck in Plant Genomics” and “Evolutionary Ups and Downs of Anthocyanin Biosynthesis”. https://www.izmb.uni-bonn.de/en/pbb/news
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Jeremy Yoder says no war @jbyoder.org · 19/08/2026
What has population genomics told us about the dynamics of selection and plant adaptation? doi.org/10.1093/molb...
doi.org
What has population genomics told us about the dynamics of selection and plant adaptation?
Abstract. Population genomics has transformed our understanding of how natural selection shapes plant genomes. The explosion of whole-genome resequencing d
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Plant Physiology @plantphys.bsky.social · 19/08/2026
Integrating the tomato chlorosis virus with the tobacco rattle virus facilitates the direct infection of tomato (Ge Wang , Yumei Bian , et al) doi.org/10.1093/plph... #PlantScience @aspbofficial
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Boas Pucker @bpucker.bsky.social · 19/08/2026
Having a busy day? Julie’s latest work might be just the thing to calm things down. 🌿 Genome sequence and annotation of Valeriana officinalis doi.org/10.64898/202... #Genomics #Bioinformatics #PlantSciences @puckerlab.bsky.social @unibonn.bsky.social @opensciene-unibonn.bsky.social
A: Valeriana officinalis, Bonn University Botanic Gardens. B: Close-up of V. officinalis flowers. Source: https://doi.org/10.64898/2026.08.14.744958
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Nick Desnoyer @nickdesnoyer.bsky.social · 17/08/2026
One month later, miss Ruby Petunie has moved from tissue culture to the glasshouse ☀️ Let’s hope she enjoys her new home 🏡
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The Arabidopsis Information Resource (TAIR) @tairnews.bsky.social · 17/08/2026
Tanya Berardini has been selected as an @agbiodata.bsky.social Champion for her work co-leading the 20-member NLP4Biocuration working group. 🧪 READ TANYA'S REFLECTIONS: bit.ly/4hFBOl8 MEET THE WORKING GROUP: bit.ly/3TTIHp9 #PlantScience #PlantBiology #Arabidopsis
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Boas Pucker @bpucker.bsky.social · 11/08/2026
More information about this upcoming course on our website: www.izmb.uni-bonn.de/en/pbb/news#... #Bioinformatics #CloudComputing #Genomics #CLI @puckerlab.bsky.social @nancy-choudhary.bsky.social
izmb.uni-bonn.de
News
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Nancy Choudhary @nancy-choudhary.bsky.social · 14/06/2026
Interested in learning more? Read about our work: 1. Withanolide-associated gene cluster discovery: doi.org/10.1038/s414...
doi.org
Phylogenomics and metabolic engineering reveal a conserved gene cluster in Solanaceae plants for withanolide biosynthesis - Nature Communications
Withanolides are plant steroids with potent bioactivities found in many medicinal plants including Withania somnifera, but their biosynthetic pathway is largely unknown. Here, the authors report the g...
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PacBio @pacbio.bsky.social · 03/07/2026
Busy ahead of the holiday weekend? Good news: We’ve extended the Metagenomics SMRT Grant deadline to July 8. Pitch your project in <100 words to win free library prep & HiFi sequencing (up to 3 Revio SPRQ-Nx SMRT Cell acquisitions) at SeqCenter. Apply here: bit.ly/4uAtTJn #PacBio
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Nancy Choudhary @nancy-choudhary.bsky.social · 14/06/2026
Great week at #EMPSEB31 in Oberwiesenthal, Germany! I presented a poster on the evolution of a withanolide biosynthetic gene cluster in Solanaceae and gave a talk on contrasting evolutionary outcomes of anthocyanin biosynthesis: complete loss in Cucurbitaceae and pathway rewiring in Poaceae. 🌱🧬
Nancy Choudhary is presenting a poster at EMPSEB31 titled "Better Together: Evolution of a Withanolide Biosynthetic Gene Cluster in Solanaceae"Nancy Choudhary is presenting a talk at EMPSEB31 titled "Poaceae and Cucurbitaceae: Non-model model systems for studying pigment evolution"Nancy Choudhary is presenting a talk at EMPSEB31 that highlights two distinct evolutionary trajectories of the anthocyanin biosynthesis pathway across major plant families.
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Mike 🏳️‍🌈 @lpoolmike.bsky.social · 03/07/2026
My big clump of Angel’s fishing rod (Dierama sp.) is looking fantastic. Takes a while to establish before flowering and hates being split or moved but in full flower looks gorgeous. The bees love it too #gardensky #flowersky #plantsky #gardening
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German Society for Plant Sciences (DBG) @plantsciencedbg.bsky.social · 03/07/2026
#PlantSciJobs #PlantSciJob Research / PostDoc position (m/f/d) Natural products involved in the communication between individuals of the same or different species @Uni Bielefeld in @chemecolcm.bsky.social 's lab. #PlantSci www.deutsche-botanische-gesellschaft.de/en/job-openi...
deutsche-botanische-gesellschaft.de
Job Openings
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Boas Pucker @bpucker.bsky.social · 03/07/2026
Just in time for the weekend: our latest paper is out in Plant Biology! Anthocyanins and betalains in evolution: Why mutual exclusion remains the best-supported model doi.org/10.1111/plb.... #PlantBiology #Evolution #Anthocyanins #Betalains @puckerlab.bsky.social @unibonn.bsky.social
doi.org
Anthocyanins and betalains in evolution: Why mutual exclusion remains the best‐supported model
Anthocyanins and betalains are plant pigments produced through different biosynthetic pathways and are generally considered mutually exclusive. We examine claims of their co-occurrence, arguing that ...
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German Society for Plant Sciences (DBG) @plantsciencedbg.bsky.social · 25/06/2026
#PlantSciJobs #PlantSciJob PhD position: Molecular physiology of photosynthesis - Transcriptional and post-translational regulation of C4-CAM photosynthesis in Portulaca. In @renatacferrari.bsky.social ‘s lab @lmu.de www.deutsche-botanische-gesellschaft.de/en/job-openi...
deutsche-botanische-gesellschaft.de
Job Openings
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PacBio @pacbio.bsky.social · 24/06/2026
For a limited time, we are re-opening a popular session on RNA isoform discovery! ⏰ See how full-length sequencing uncovers the novel mRNA isoforms and splicing events in immunotherapy research that gene expression alone misses. Access the featured session while it is open: bit.ly/4vem3Fc #PacBio
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UCDavisPlants @ucdavisplants.bsky.social · 24/06/2026
🌱 From Journal of Experimental Botany: Tomato research is revealing how plants grow, ripen, resist stress, and build flavor, helping agriculture prepare for climate change, improved nutrition, and reduced pesticide use. (Diane M Beckles) ▶️ academic.oup.com/jxb/article/... #PlantScience
academic.oup.com
Tomato
Abstract. Tomato is both one of the most consumed horticultural crops and the model species for fleshy fruits. While impressive yields are now obtained, th
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German Society for Plant Sciences (DBG) @plantsciencedbg.bsky.social · 24/06/2026
New Tool CleanFinder - a freely available browser-based tool for genome editing (#NGT) analysis. DOI: 10.1016/j.tibtech.2026.04.024 iuf-duesseldorf.de/en/cleanfind...
iuf-duesseldorf.de
CleanFinder: a freely available browser-based tool for genome editing analysis - IUF
Researchers at the IUF – Leibniz Research Institute for Environmental Medicine in Düsseldorf release an open, privacy-preserving platform that genotypes CRISPR, base, and prime editing outcomes — with...
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Boas Pucker @bpucker.bsky.social · 04/05/2026
Final week of our Python course for Plant Sciences Master’s students 🌱🐍🖥️ Covered fundamentals (data types, control flow), file handling, and modules, plus discussed the risks and benefits of AI in scientific research. 🔗 github.com/bpucker/PyBo #Python #Bioinformatics @puckerlab.bsky.social
Screenshots of Python course. Source: https://github.com/bpucker/PyBo
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German Society for Plant Sciences (DBG) @plantsciencedbg.bsky.social · 15/06/2026
#bioinformatics #PlantSciJobs #PlantSciJob
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German Society for Plant Sciences (DBG) @plantsciencedbg.bsky.social · 23/06/2026
What made #trees possible? New study points to #drought survival. #Evolution Published from #plantSci scientists in @currentbiology.bsky.social DOI: doi.org/10.1016/j.cu...
doi.org
Redirecting
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Plant Science🍀🌱 @sciplant.bsky.social · 16/06/2026
#PlantSciJobs #PlantScienceJobs
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Feargal Ryan @feargalr.bsky.social · 15/06/2026
I’ve been maintaining a list of shotgun #metagenomics tools and resources which I got Claude to turn into a GitHub repo. It has 300+ entries. Please share and tell me if I’ve missed anything! github.com/feargalr/Met... #microbiota #bioinformatics #microbiome #genomics
github.com
GitHub - feargalr/Metagenomics-tools-atlas: An inventory of tools and resources for short-read shotgun metagenomics.
An inventory of tools and resources for short-read shotgun metagenomics. - feargalr/Metagenomics-tools-atlas
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Igor Martayan @imartayan.bsky.social · 15/06/2026
Just submitted my PhD thesis on algorithms for fast, large-scale k-mer-based sequence analysis. It's now available to read at phd.martayan.org Take a look and feel free to share! #Bioinformatics #PhDone
phd.martayan.org
Algorithm design and implementation for the scale of sequencing data
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TeselaGen Biotechnology @teselagen.bsky.social · 09/06/2026
The leaders of several major AI companies—in a rare moment of unity—have penned a new letter urging U.S. lawmakers to impose tighter controls on firms that sell synthetic, made-to-order strands of DNA. #AI #synbio
science.org
AI executives join call for stricter regulation of synthetic biology
Letter urges Congress to require DNA firms to screen orders to prevent AI-aided bioweapons
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PlantEvolution 🌱🌾 @plantevolution.bsky.social · 18/06/2026
25 years at @maxplanck.de! (Really 40 years, if you count that I started my graduate studies exactly 40 years ago at the Max Planck Institute for Developmental Biology under the guidance of my beloved mentor (and friend) Herbert Jäckle.)
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Boas Pucker @bpucker.bsky.social · 14/06/2026
If you are interested in free full plasmid sequencing, have a look at our preprint and get in touch: doi.org/10.64898/202... #Plasmids #Biotech #SynBio #iGEM #Cloning
doi.org
NanoPlasmiQC: Full plasmid sequencing with ONT long-reads and automatic data analysis
Long-read sequencing has shown a rapid technological development during the last years. It has been established as the standard method for the sequencing of plant genomes and has also gained importanc...
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German Society for Plant Sciences (DBG) @plantsciencedbg.bsky.social · 18/06/2026
Thanks to all the plant scientists, who have tirelessly explained the new genomic techniques (#NGT) besides their workload in the universities, the labs and during their PhD theses! #SciComm Read details on EU’s new rules www.europarl.europa.eu/news/en/pres...
europarl.europa.eu
New genomic techniques for plants to boost innovation in sustainable agriculture | News | European Parliament
Parliament has adopted new rules facilitating access to new plants that are climate and pest resistant, give higher yields and require fewer pesticides.
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dnarnaresearch.bsky.social @dnarnaresearch.bsky.social · 18/06/2026
Emerging technologies for the discovery of biosynthetic genes in plants doi.org/10.1039/D6NP... #PlantSci #Genomics #Bioinformatics
doi.org
Emerging technologies for the discovery of biosynthetic genes in plants
Covering 1982 to 2026Some of the most prominent natural products originate from plants. Discovering their biosynthetic genes has been a slow process. In contrast to microbial systems, co-expression an...
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Boas Pucker @bpucker.bsky.social · 15/06/2026
We are looking for a Bachelor's or Master's student to develop a functional annotation tool for large plant gene families. If you are excited about this opportunity, please get in touch. Details are available here: www.izmb.uni-bonn.de/en/pbb/news#... #Python #Bioinformatics @puckerlab.bsky.social
Illustration showing the opportunity to develop a gene family annotation tool. Details: https://www.izmb.uni-bonn.de/en/pbb/news#GFA2026
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PuckerLab publications @puckerlabpapers.bsky.social · 14/06/2026
Please share with your network: Would you benefit from full plasmid sequencing? Check out this cost-effective solution via nanopore sequencing on old flow cells: doi.org/10.64898/202... #LongReads #Biotech #SynBio #Plasmids #iGEM @puckerlab.bsky.social @bpucker.bsky.social
doi.org
NanoPlasmiQC: Full plasmid sequencing with ONT long-reads and automatic data analysis
Long-read sequencing has shown a rapid technological development during the last years. It has been established as the standard method for the sequencing of plant genomes and has also gained importanc...
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Noah Whiteman @nkwhiteman.bsky.social · 12/06/2026
Have a concise report for a genome assembly (or allied dataset) you'd like to publish? I am Senior Editor for the open access Genetics Society of America's G3: Genes|Genomes|Genetics @genetics-gsa.bsky.social and I handle Genome Reports. Our team of academic editors is superb. Consider submitting!
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Kristian Strutt @kdstrutt.bsky.social · 13/06/2026
Give me all your lupins!
Spikes of flowers with fields in the distance.
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