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N End Rules

@n-end-rules.bsky.social
368 followers 195 following 23 posts

Destabilising..

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New Phytologist @newphyt.bsky.social · 28/09/2026
Mutations in SUMO conjugating enzyme reveal contributions of sumoylation to plant stress resilience and yield Lilian Nehlin, et al. nph.onlinelibrary.wiley.com/doi/10.1111/... #PlantScience
Impact of mutations in Arabidopsis SUMO conjugating enzyme on protein structure and growth habit.
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John Stott @jpsastro.bsky.social · 24/09/2026
Had a UKRI funded grant proposal rejected at the "AI triage stage". "This AI-based triage was used only to identify approximately 50% of the strongest proposals to take forward to full human review." 🧪 #academicsky
I am writing to let you know that, unfortunately, your application was not successful.

Review process

As part of the initial triage of the 179 proposals submitted to this call, each was assessed using an AI-based review. Every proposal was read independently by several different AI models against the same seven criteria used to shape this call (including cyber security relevance, research quality and novelty, importance of the problem addressed, feasibility of the project plan, likely outputs and impact, value for money, and responsible research practice), with each model asked to give a score and a written justification with supporting quotations from the text. To guard against any one model's idiosyncrasies, we also ran a second, independent process in which different AI models debated the merits and weaknesses of each proposal before reaching a judgement, again against the same criteria. Scores from both processes were combined to produce an overall ranking. 

This AI-based triage was used only to identify approximately 50% of the strongest proposals to take forward to full human review.  Projects selected for funding were drawn from those that progressed to the full human review stage. We recognise that AI-assisted assessment is a new and evolving part of the review process, and we are continuing to evaluate how well it aligns with the judgements of human reviewers on this call. We will soon produce a document detailing our method, so that others can build upon it and improve it.

Feedback on your application

Your application was not selected to progress beyond the AI triage stage.  To provide transparency on the outcome of this assessment, we are sharing below the scores (out of 5) from each of the two AI review processes described above, together with the mean score across the two processes.
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N End Rules @n-end-rules.bsky.social · 25/09/2026
Can @ukri.org tell us what AI thinks makes a good proposal so that we can write our proposals in that way? This is an extremely poor decision. Why not just put all internationally competitive proposals in a hat and pull them out randomly? That at least would be transparent.
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N End Rules @n-end-rules.bsky.social · 24/09/2026
Great to see such detailed and continuing work on COMATOSE including cryo-EM structures! Structural insights into Arabidopsis thaliana CTS-mediated fatty acid and hormone metabolism www.nature.com/articles/s41...
nature.com
Structural insights into Arabidopsis thaliana CTS-mediated fatty acid and hormone metabolism - Nature Communications
Researchers report five cryo-EM structures of the Arabidopsis peroxisomal transporter CTS, revealing how it imports fatty acids, hormone precursors, and herbicides into peroxisomes for β oxidation.
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Thomas Arnesen @natmachinery.bsky.social · 21/09/2026
Coenzyme A biosynthesis is regulated by two distinct Ubiquitin E3 ligase complexes | UBR4-KCMF1 and MKLN1-CTLH independently converge on a common N-terminal MK Arg/N-degron to promote PANK degradation and restrict CoA biosynthesis | @ispt-proteinterm.bsky.social www.biorxiv.org/content/10.6...
biorxiv.org
Parallel Arg/N-degron recognition systems regulate coenzyme A biosynthesis
Coenzyme A (CoA) is an essential metabolic cofactor whose biosynthesis is controlled by pantothenate kinases (PANKs), the rate-limiting enzymes in CoA synthesis. Although CoA production is extensively...
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NordenLab @nordenlab.bsky.social · 20/09/2026
7.3% funding rate, if lucky. Who is going to read this, how do you make an objective decision (different (types) of reviewers)? I will die on this hill: If the funding rates do not go up, a lottery in the top 25% is more fair than arbitrary human decisions, I doubt you will go wrong in that cohort.
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plantproteostasis.bsky.social @plantproteostasis.bsky.social · 19/09/2026
Hello, Proteostasis Community!🌱 We’re excited to finally share with you the final program of our conference!🎉 Join us in the charming city of Strasbourg from October 14th to 16th for three days of exciting science and inspiring discussions! 🧬 🧪 Stay tuned for more updates!
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Isa Manrique @isamanrique.bsky.social · 16/09/2026
Our paper is out! 🤩 HYT1, a new Cys2- substrate of the #Ndegron pathway to add to the list! 🌱 Thanks to @n-end-rules.bsky.social @charlene-kunaka.bsky.social @gunjansharma88.bsky.social , Susana and all the people involved in this work! You can read it on @natcomms.nature.com👇🏼
nature.com
Hierarchical regulation of oxygen-sensing through coupled transducers in Arabidopsis thaliana - Nature Communications
The PLANT CYSTEINE OXIDASE (PCO) N-degron pathway contributes to oxygen sensing in plants. Here the authors identify HYPOXIA TRANSDUCER1 (HYT1) as a substrate of PCO and show it forms a coherent feed-...
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Mary Williams @PlantTeaching @plantteaching.bsky.social · 16/09/2026
Many of you may have heard the terrible news of Dr. Meng Chen's sudden death. I just found this tribute from UC Riverside cnas.ucr.edu/news/2026/09... and a beautiful review article he contributed to @plantphys.bsky.social earlier this year, "25 years of photobodies" doi.org/10.1093/plph... 💔
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International Society for Plant Low Oxygen Research @isplore.bsky.social · 16/09/2026
Hierarchical regulation of oxygen-sensing through coupled transducers in Arabidopsis thaliana www.nature.com/articles/s41... New #plantscience work by @isamanrique.bsky.social @charlene-kunaka.bsky.social @gunjansharma88.bsky.social @n-end-rules.bsky.social
nature.com
Hierarchical regulation of oxygen-sensing through coupled transducers in Arabidopsis thaliana - Nature Communications
The PLANT CYSTEINE OXIDASE (PCO) N-degron pathway contributes to oxygen sensing in plants. Here the authors identify HYPOXIA TRANSDUCER1 (HYT1) as a substrate of PCO and show it forms a coherent feed-...
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N End Rules @n-end-rules.bsky.social · 16/09/2026
We introduce a new transducer of oxygen sensing: Cys2-HYT1 @isamanrique.bsky.social @charlene-kunaka.bsky.social Susanna Ubeda Tomas & @gunjansharma88.bsky.social ma88.bsky.social lead work defining HYT1 contribution to root hypoxia tolerance. @natcomms.nature.com www.nature.com/articles/s41...
nature.com
Hierarchical regulation of oxygen-sensing through coupled transducers in Arabidopsis thaliana - Nature Communications
The PLANT CYSTEINE OXIDASE (PCO) N-degron pathway contributes to oxygen sensing in plants. Here the authors identify HYPOXIA TRANSDUCER1 (HYT1) as a substrate of PCO and show it forms a coherent feed-...
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International Society for Protein Termini (ISPT) @ispt-proteinterm.bsky.social · 13/09/2026
Rubisco, a CO2-fixing enzyme and a major reservoir of nitrogen and carbon in plant leaves, requires a unique N-terminal maturation pathway | Dong Xie et al. @giglionelab.bsky.social @ifink-lab.bsky.social www.science.org/doi/10.1126/...
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New Phytologist @newphyt.bsky.social · 07/09/2026
Radial #oxygen loss, rhizospheric #methane oxidation and methane emissions from #rice roots Juan de la Cruz Jiménez, et al. nph.onlinelibrary.wiley.com/doi/10.1111/... #PlantScience
Longitudinal variation in rice (Oryza sativa) root traits affecting the bidirectional diffusion of O2 and CH4.
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Daan Weits @daanweits.bsky.social · 31/08/2026
Our work, Progressive oxygenation of developing leaves directs morphogenesis, is now out in Science Advances! We found that developing leaves oxygenate from tip to base, strikingly mirroring their developmental axis, and this drives leaf dev. www.science.org/doi/10.1126/sciadv.aef2430 #plantscience
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International Society for Plant Low Oxygen Research @isplore.bsky.social · 30/08/2026
Progressive oxygenation of developing leaves directs morphogenesis Exciting #plantscience work by @daanweits.bsky.social @panicuccigabriele.bsky.social @syno2xis.bsky.social out now in Science Advances www.science.org/doi/10.1126/...
science.org
Progressive oxygenation of developing leaves directs morphogenesis
Oxygen availability underpins energy production in multicellular organisms, yet internal oxygen gradients arise in both plants and animals. Plants sense these variations via the plant cysteine oxidase...
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Dan Gibbs 🌱🧬 @djgibbs.bsky.social · 24/08/2026
Protein synthesis is dynamically responsive to the environment, but how do cells ensure that their protein quality control mechanisms are appropriately scaled to changing translational demand? We address this question in our new study in @natcomms.nature.com www.nature.com/articles/s41...
nature.com
TOR–NOT4 signalling couples translation to co-translational quality control in plants - Nature Communications
Here, Schwarze et al. reveal how plant cells match protein quality control to changing rates of protein production through a functional link between TOR kinase signalling and NOT4 E3 ubiquitin ligases
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Reese Richardson @reeserichardson.bsky.social · 25/08/2026
A massive update: At least ~15 companies~ are selling scientists antibodies using faked validation data. We've documented 18,000+ manipulated images on 17,000+ products sold by leading laboratory suppliers including Thermo Fisher, Abcam, Santa Cruz Biotechnology, Millipore Sigma and Bio-Techne. 1/🧵
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bioRxiv Plant Bio @biorxiv-plants.bsky.social · 25/08/2026
The RAP2.12 and RAP2.3 factors act downstream of LRR-MAL Receptor Kinases in Arabidopsis pollen-stigma interactions. www.biorxiv.org/content/10.64898/20…
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Pierdomenico Perata @theplantlab.bsky.social · 19/08/2026
Chemical priming of hypoxia responses via PLANT CYSTEINE OXIDASE inhibition improves flooding tolerance academic.oup.com/plphys/artic...
academic.oup.com
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Pierdomenico Perata @theplantlab.bsky.social · 19/08/2026
Oxygen sensing in plants: from dynamic hypoxia signalling to the expanding roles of the Cysteine N-degron pathway academic.oup.com/jxb/article/...
academic.oup.com
Oxygen sensing in plants: from dynamic hypoxia signalling to the expanding roles of the Cysteine N-degron pathway
Abstract. Recent discoveries have fundamentally transformed the paradigm of plant oxygen sensing. Hypoxia is no longer viewed solely because of environment
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German Society for Plant Sciences (DBG) @plantsciencedbg.bsky.social · 17/08/2026
#PlantSciJobs #PlantSciJob PostDoc position (3 + 2 years) Protein biochemistry or molecular plant sciences @Uni Osnabrück, Germany Start: as soon as possible Deadline: 31. August 2026 www.deutsche-botanische-gesellschaft.de/en/job-openi...
deutsche-botanische-gesellschaft.de
Job Openings
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International Society for Plant Low Oxygen Research @isplore.bsky.social · 28/07/2026
In memory of Professor Tamara Vasilievna Chirkova (1932 -2026). She pioneered research on plant adaptation to oxygen deficiency and laid a robust foundation for the advancements we witness today. #plantscience sites.google.com/ucr.edu/ispl...
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bioRxiv Plant Bio @biorxiv-plants.bsky.social · 27/07/2026
Functional diversification of UBP6 in plant immunity through N-degron pathway regulation www.biorxiv.org/content/10.64898/20…
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Jorge Vicente @yorgsvicen.bsky.social · 27/07/2026
Our new preprint shows that metacaspase-mediated proteoform generation and N-degron pathway-dependent proteoform stability act together to diversify UBP6 function during Arabidopsis immunity www.biorxiv.org/content/10.6...
biorxiv.org
Functional diversification of UBP6 in plant immunity through N‑degron pathway regulation
Deubiquitylases are key proteolytic regulators of ubiquitin-dependent cellular processes, catalyzing the removal or remodelling of ubiquitin modifications on substrate proteins, including those target...
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N End Rules @n-end-rules.bsky.social · 27/07/2026
New preprint: In collaboration with @yorgsvicen.bsky.social we show metacaspase9 and ATE N-degron pathway-dependent proteoform stability act to diversify UBP6 function during plant immunity www.biorxiv.org/content/10.6...
biorxiv.org
Functional diversification of UBP6 in plant immunity through N‑degron pathway regulation
Deubiquitylases are key proteolytic regulators of ubiquitin-dependent cellular processes, catalyzing the removal or remodelling of ubiquitin modifications on substrate proteins, including those target...
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Richard Sever @richardsever.bsky.social · 11/07/2026
FTFY
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Álvaro Fernández @alvaroferfer.bsky.social · 25/06/2026
We developed genetically encoded FRET-based biosensors to visualize protease activity in living plant cells with high spatial and temporal resolution. (2/5)
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charlene-kunaka.bsky.social @charlene-kunaka.bsky.social · 18/06/2026
Today marks a huge milestone in my career. I am proud to be announced as one of the new BBSRC Discovery Fellowship awardees, with a grant close to the value of £500 000
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Michael Okun @michael-okun.bsky.social · 10/06/2026
I’ve officially resigned as Associate Editor for Frontiers in Systems Neuroscience. It used to be a reputable journal, but became a case study in how forced automation destroys academic integrity. 👇
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Michael Okun @michael-okun.bsky.social · 10/06/2026
Over the last month I saw that human editors are now stripped of control. I could no longer stop the system from auto-inviting "reviewers" with zero relevant expertise. Even worse - the AI began actively revoking the invitations I manually sent out to actual, qualified experts.
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Rodrigo Reis @rodrigoreislab.com · 10/06/2026
Cool new T-DNA plasmid! Let's see how it gets adopted and common tools become available -- hope those will happen to some level at least www.biorxiv.org/content/10.6...
biorxiv.org
Rational design of T-DNA vectors enables predictable, single-copy integration in Arabidopsis thaliana
Agrobacterium-mediated transformation is the dominant method for plant transgenesis, yet it frequently produces multi-copy, structurally complex T-DNA insertions associated with transgene silencing, u...
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Plant Energy Biology Lab @schwarzlanderlab.bsky.social · 21/05/2026
The final version of our @annualreviews.bsky.social article is now published OPEN ACCESS www.annualreviews.org/content/jour...
annualreviews.org
In Vivo Monitoring of Energy Metabolism with Genetically Encoded Fluorescent Biosensors
All organisms fuel and build themselves through their energy metabolism. While classic biochemistry conceptualizes the fluxes of energy and matter, our understanding of how energy metabolism works in ...
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dave dougan @douganlab.bsky.social · 18/05/2026
The N-degron pathway regulates glucose and insulin homeostasis through the lysosomal degradation of RXRA/RXRα via SQSTM1/p62: Autophagy: www.tandfonline.com/doi/abs/10.1...
tandfonline.com
The N-degron pathway regulates glucose and insulin homeostasis through the lysosomal degradation of RXRA/RXRα via SQSTM1/p62
Central to the pathogenesis of type 2 diabetes (T2D) is the failure in insulin secretion from pancreatic β-cells associated with insulin resistance. The nuclear receptor RXRA/RXRα (retinoid X recep...
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Thomas Arnesen @natmachinery.bsky.social · 08/05/2026
New review out on protein N-terminal formylation - a stress-inducible modification of eukaryotic proteins #N-degron @ispt-proteinterm.bsky.social www.nature.com/articles/s12...
nature.com
N-terminal formylmethionine as a degron and a specific signal in proteostasis and stress adaptation - Experimental & Molecular Medicine
N-terminal methionine formylation, a protein modification once thought to be exclusive to bacteria and organelles, also occurs on proteins synthesized in the cytosol of yeast and human cells, challeng...
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bioRxivpreprint @biorxivpreprint.bsky.social · 05/05/2026
An oxygen-sensing Polycomb-group protein encodes flooding stress memory in plants www.biorxiv.org/content/10.64898/20…
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Sjon Hartman @hartman-plantlab.com · 05/05/2026
So happy and proud to share our lab’s first #plantscience research article, revealing that angiosperms have the capacity to encode memory of flooding stress. A heroic effort by @aidamaric.bsky.social in collaboration with @djgibbs.bsky.social and others. A brief 🧵 www.biorxiv.org/content/10.6...
biorxiv.org
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N End Rules @n-end-rules.bsky.social · 26/04/2026
Is this the end of science as we know it? mikhoelias.substack.com/p/how-ai-bre...
mikhoelias.substack.com
How AI Breakthrough Could Shake the Scientific Publishing Process
Recent Image generation and LLM models are so good they can produce digital assets nearly undistinguishable from genuine ones.
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Cheshire @thatsregrettab1.bsky.social · 25/04/2026
For those who missed this at the other place: open.substack.com/pub/mikhoeli...
open.substack.com
How AI Breakthrough Could Shake the Scientific Publishing Process
Recent Image generation and LLM models are so good they can produce digital assets nearly undistinguishable from genuine ones.
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Nottinghamshire @nottinghamshireuk.bsky.social · 24/04/2026
University of Nottingham set to cut 600 jobs in major cost-cutting move #Nottinghamshire #Notts
nottinghampost.com
University plans 600 job cuts in major cost-cutting move
The university hopes the move will stop it from running out of cash
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Thomas Arnesen @natmachinery.bsky.social · 22/04/2026
N-terminal cysteine dependent proteolysis of RGS4/5 is not sensitive to physiological oxidative stress | Preprint by Ya-Min Tian, Haeun Kim, Peter Ratcliffe & Thomas Keeley @ox.ac.uk @ispt-proteinterm.bsky.social #N-degron #cysteine www.biorxiv.org/content/10.6...
biorxiv.org
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Plant Energy Biology Lab @schwarzlanderlab.bsky.social · 22/04/2026
We knew PCOs & ERFVIIs regulated plant hypoxia, but this work shows they also manage the 'reoxygenation' stress. www.nature.com/articles/s41... @biology.ox.ac.uk @ox.ac.uk @uni-muenster.de
nature.com
H2O2 repurposes plant O2 sensing to regulate post-hypoxia responses - Nature
Experiments in Arabidopsis demonstrate that group VII ethylene response factors show differential responses to different stimuli, enabling plants in flood-prone environments to adapt to both submergen...
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Kawamura Research Group @kawamuragroup.bsky.social · 17/04/2026
🎉 Thrilled - our new Nature Chemistry paper identifying H3K9acOH, a new histone PTM formed by JmjC oxygenase KDM3A - revealing an O2‑dependent PTM in chromatin regulation. Congrats to CRUK KDM team in the Kawamura & Schofield groups & thanks to our amazing collaborators! 📄 rdcu.be/fdx4f #Epigenetics
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New Phytologist @newphyt.bsky.social · 16/04/2026
Generation of Brassica napus with enhanced Sclerotinia sclerotiorum resistance through CRISPR/Cas9‐mediated inhibition of the PROTEOLYSIS6 N‐degron pathway Lin et al. nph.onlinelibrary.wiley.com/doi/10.1111/...
Sclerotinia sclerotiorum infection establishes cellular hypoxia in Brassica napus.
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N End Rules @n-end-rules.bsky.social · 16/04/2026
The N-degron pathways move from basic to applied science. This pathway will prove to be of key importance for agricultural improvement. Very happy to have been a part of this work led by Chen Lin and colleagues. #plantscience #nendrule #hypoxia nph.onlinelibrary.wiley.com/doi/10.1111/...
nph.onlinelibrary.wiley.com
Generation of Brassica napus with enhanced Sclerotinia sclerotiorum resistance through CRISPR/Cas9‐mediated inhibition of the PROTEOLYSIS6 N‐degron pathway
Click on the article title to read more.
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canaztekin.bsky.social @canaztekin.bsky.social · 10/04/2026
🚨 Why can’t mammals regenerate limbs like frog tadpoles or salamanders? In our new paper in @science.org , we show that species-specific oxygen sensing acts as a gatekeeper for initiating limb regeneration 🐭🐸 🔗 www.science.org/doi/10.1126/... #EvoDevo
science.org
Species-specific oxygen sensing governs the initiation of vertebrate limb regeneration
Why mammals cannot regenerate limbs like amphibians do presents a long-standing puzzle in biology. To uncover the underlying differences, we compared amputation responses of embryonic mouse (Mus musculus) and Xenopus laevis tadpole limbs. Lowering ...
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COS Heidelberg @cosheidelberg.bsky.social · 07/04/2026
New publication from Markus Wirtz and colleagues on N-terminal protein acetylation: www.nature.com/articles/s41...
nature.com
The ribosome-associated N-terminal acetyltransferase B coordinates global proteostasis and autophagy in plants by creating Ac/N-degrons - Nature Communications
Protein N-terminal acetylation profoundly influences protein fate. Here, the authors establish NatB as a central regulator of the interplay between ubiquitin–proteasome system and autophagy, and highl...
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CRAG @cragenomica.bsky.social · 27/03/2026
🌱 CRAG launches an international call for early‑career researchers! We invite young scientists interested in starting their independent research group at CRAG 📅 Deadline - April 26 Apply now 👉 f.mtr.cool/jdwzombrbd
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Proteostasis UK @proteostasisuk.bsky.social · 17/03/2026
Proteostasis UK Logo Competition Design our new logo and win registration, UK‑based travel, and accommodation to attend the UK Proteostasis Meeting 2026, 20–21 July at The Francis Crick Institute, London. See here for more information: proteostasisuk.co.uk/calls/proteo... Deadline: 1st May 2026
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charlene-kunaka.bsky.social @charlene-kunaka.bsky.social · 12/03/2026
I am definitely where I belong! So proud of me right now 🥰 and grateful of my support system in this team 🥂!
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Mikel Lavilla-Puerta @mikellavi.bsky.social · 11/03/2026
Finally officially out!! www.pnas.org/doi/10.1073/... We moved the main oxygen sensing machinery from plants to yeast and we learned a few things!
pnas.org
A synthetic ERFVII-dependent circuit in yeast sheds light on the regulation of early hypoxic responses of plants | PNAS
Plants face hypoxic conditions either chronically, as particular tissues are characterized by fluctuating or stable low oxygen levels, or acutely, ...
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