Murat Tugrul @mtugrul.bsky.social · 20/07/2026July has become my “conference month.” After two inspiring meetings in Turkey (statistical physics in Istanbul and evolution & ecology in Mersin), I’m already off again to Ireland for #MMEE2026 in Cork. Looking forward to be immersed in my real niche: mathematical modelling of evolution and ecology 121
Reposted by Murat TugrulSMTPB @smtpb.bsky.social · 14/07/2026Save the date! The next SMTPB conference will take place May 3-6, 2027, at Stanford University. Make sure you're on the mailing list to stay in the loop for updates - reach out to info@smtpb.org. 02014
Murat Tugrul @mtugrul.bsky.social · 26/05/2026Join our workshop on Mathematical & Evolutionary Systems Biology on July 4–6, 2026 in Mersin, Turkey Target: Phys, Math & Bio students/postdocs Topics: From gene regulatory networks to Wright-Fisher population genetic models with hands-on derivations and coding eebst.ekoevo.org/2026-worksho... 000
Reposted by Murat TugrulShiladitya Banerjee @shilabanerjee.bsky.social · 15/05/20261/ Can a single bacterium learn? No brain, no neurons, just one cell deciding what to do next. Our new paper says yes, and the cell's internal machinery turns out to compute exactly like a recurrent neural network. 🔗 journals.aps.org/prxlife/abstract/10.1103/5zbg-8vll 2426
Reposted by Murat TugrulEvolDir @evoldir.bsky.social · 21/04/2026📣 EvolDir is now managed by @eseb.bsky.social! We are delighted to be taking the reins and express our gratitude to both Brian Golding who began this service to the community in the mid-1980s and to @rdmpage.bsky.social who ran this account until now 👏 You can now find evoldir here: evoldir.net 217785
Murat Tugrul @mtugrul.bsky.social · 30/03/2026I’m in Turkey for two weeks for a family visit and a few academic visits. I’ll be giving talks at: - Mar 30, 14:40 — METU, Ankara - Apr 1, 11:00 — Bilkent / UNAM, Ankara - Apr 9, 14:30 — Koç Uni., Istanbul If you’re around, feel free to join or reach out. Happy to connect and discuss. 000
Reposted by Murat TugrulAnuraag Bukkuri @evo-eco-onco.bsky.social · 16/03/2026Check out our paper in #EMPH that integrates multiplex immunofluorescence imaging with manifold learning to develop life history enlightened therapies to prevent hepatocellular carcinoma! 🎉 academic.oup.com/emph/advance... Had a blast working on this with @wstallaert.bsky.social & Andy Duncan!academic.oup.comLife history enlightened therapies: cell cycle mapping to identify molecular targets to prevent hepatocellular carcinomaAbstractBackground and objectives. Life history enlightened therapies (LHETs) were originally developed in cancer to combat therapeutic resistance by targe 131
Reposted by Murat TugrulMMEE @mmee-int.bsky.social · 03/03/2026For the MMEE 2026 in Cork www.ucc.ie/en/matsci/ev... note the updated deadline! Submission of talks and poster presentations: March 30th, 2026.ucc.ieMathematical Models in Ecology and Evolution | University College CorkLearn, Study and Research in UCC, Ireland's first 5 star university. Our tradition of independent thinking will prepare you for the world and the workplace in a vibrant, modern, green campus. 089
Reposted by Murat TugrulLilly Cummins @lillycummins.bsky.social · 02/03/2026I’ve spent a lot of time over the past two years thinking about genome evolution and how recent research revealing complex gene-gene interactions has complicated traditional ‘gene-centric’ genomic approaches to evolution. So here is a review that consolidates these thoughts! rdcu.be/e6pHYrdcu.beEpistasis and co-adaptation in bacterial genome evolutionNature Reviews Genetics - Bacterial genome evolution is shaped by epistasis, which can constrain or promote specific evolutionary paths. The authors review how integrating the effects of epistatic... 49039
Reposted by Murat TugrulbioRxiv Microbiology @biorxiv-microbiol.bsky.social · 23/02/2026DNA replication initiation causally sets the added mass for cell division in Escherichia coli www.biorxiv.org/content/10.64898/20… 032
Murat Tugrul @mtugrul.bsky.social · 13/02/2026Mesela Japonya’ya gitseniz, sokakta bile çöp kutusu görmezseniz, orda da sokağa mı atacaksınız? “Sözleşmeler” pek öyle herkesi içeren şeyler değiller çoğunlukla. 100
Reposted by Murat TugrulEvolDir @evoldir.bsky.social · 26/01/2026Join the symposium "The genetic basis of evolutionary rescue" at SMBE 2026 in Copenhagen (June 28 - July 2). Submit abstracts by Feb 3. More info: smbe2026.org. Organizers: Matthew Osmond & Hildegard Uecker. #conferencesmbe2026.orgHome - SMBE 2026 - Copenhagen DenmarkSMBE 2026 The Annual Meeting of the Society for Molecular Biology & Evolution 28 June – 2 July 2026, Copenhagen General Information Registraion Programme Abstract Submission Latest UPDATE → Abstract submission and Award application is open – See more, submit and apply here. → Registration is open – Go to the registration information and sign up […] 032
Reposted by Murat TugrulAmir Mitchell @amitchell.bsky.social · 22/12/2025Our recent paper in npj Antimicrobials and Resistance is a great example of scientific serendipity: after staring at thousands of bacterial growth curves over many studies, we started wondering whether the curve shapes themselves carry mechanistic information 1/9 🦠🧪 www.nature.com/articles/s44...nature.comPredicting drug inactivation by changes in bacterial growth dynamics - npj Antimicrobials and Resistancenpj Antimicrobials and Resistance - Predicting drug inactivation by changes in bacterial growth dynamics 24625
Reposted by Murat TugrulEMBO @embo.org · 19/12/2025Join the dialogue on the #evolution of cellular processes at the EMBO Workshop "The rules of the game: Biophysical & molecular principles in cellular evolution" in #Oeiras, PT, 2–5 June 2026. Deadline: 1 March meetings.embo.org/event/26-cellular… #EMBORulesOfTheGame #EMBOevents 🧪 075
Murat Tugrul @mtugrul.bsky.social · 13/12/2025This was the very puzzling dish when i was child, i kept asking “but why did the imam faint?!” A side note: it should be accompanied by rice and yogurt :) 041
Reposted by Murat Tugrul#SingleCell preprints @prepub-singlecell.bsky.social · 08/12/2025Exactly Solvable Population Model with Square-Root Growth Noise and Cell-Size Regulation #SingleCell 🧪🧬🖥️ arxiv.org/abs/2512.05190 021
Reposted by Murat TugrulPleuni Pennings @pleunipennings.bsky.social · 06/12/2025This is incredible - even now in the US - this story of a tenured prof losing her job over protests is worse than I have come to expect. She participated in a peaceful protest against the genocide in Gaza. www.theguardian.com/us-news/2025...theguardian.comTenured US professor fired over pro-Palestinian protests contests dismissalSang Hea Kil is first tenured faculty member fired from a public university in connection to the protests 0113
Reposted by Murat TugrulMaria Dzunkova @dzunkovam.bsky.social · 06/12/2025My @i2sysbio.es colleagues Lucas Mora, Rafael Sanjuan @rafa-sanjuan.bsky.social and Pilar Domingo Calap @pilardomingoc.bsky.social published a paper about reversible phenotypic resistance to phages in Klebsiella. 👏👏 Congratulations! 🧬🖥🧪🦠🧫 #microsky #viruses #phages www.cell.com/iscience/ful...cell.comReversible phenotypic resistance to phage infection via capsule downregulation in Klebsiella pneumoniaeMolecular biology; Microbiology; Cell biology 0154
Reposted by Murat TugrulbioRxiv SysBio @biorxiv-sysbio.bsky.social · 01/12/2025Conserved Master Regulators Orchestrate Cellular Reprogramming-Induced Rejuvenation www.biorxiv.org/content/10.1101/202… 011
Murat Tugrul @mtugrul.bsky.social · 25/11/2025Great postdoc opportunity in ageing, biophysical modelling, and ML approaches. Javier Buceta is an excellent scientist/mentor, i2sysbio is a fantastic institute, Valencia is an outstanding place to live and work. If you’re interested, reach out to @javierbuceta.bsky.social before it’s too late! 010
Reposted by Murat TugrulNature Microbiology @natmicrobiol.nature.com · 18/11/2025#Review Bacteria can “remember” past environments through genetic & biochemical imprints helping them adapt and thrive! 🦠🧠 #MicroSky www.nature.com/articles/s41...nature.comExploring the concept of bacterial memory - Nature MicrobiologyThis Perspective discusses the concept, mechanisms and evidence for memory in bacteria at individual and community levels. 03616
Reposted by Murat Tugrul#SingleCell preprints @prepub-singlecell.bsky.social · 10/11/2025Identifying Drift, Diffusion, and Causal Structure from Temporal Snapshots #SingleCell 🧪🧬🖥️ arxiv.org/abs/2410.22729 011
Reposted by Murat TugrulGina Baucom @gbaucom.bsky.social · 11/10/2025I'm the incoming SSE president and am behind this idea -- if you're interested in putting together an app and have questions, pls reach out! 24832
Murat Tugrul @mtugrul.bsky.social · 29/09/2025Big congrats to my first Master’s student, Metehan, on his successful defence last Friday! He worked on stochastic DNA damage dynamics under radiation, laying the groundwork for a manuscript. Now he’s off to a PhD in Astrobiology. Wishing him success ahead! 020
Reposted by Murat TugrulbioRxiv Evolutionary Biology @biorxiv-evobio.bsky.social · 19/09/2025Evidence for Neolithic acquisition of the high pathogenic island by Escherichia coli followed by recent selection www.biorxiv.org/content/10.1101/202… 084
Reposted by Murat TugrulNature @nature.com · 28/08/2025For life to emerge on Earth, peptides must first have formed without the aid of enzymes — but how? Reactions of sulfur-containing molecules might have been key go.nature.com/4oX04jCgo.nature.comOrigins of life: the molecules that could have unlocked peptide synthesisFor life to emerge on Earth, peptides must first have formed without the aid of enzymes — but how? Reactions of sulfur-containing molecules might have been key. 05615
Reposted by Murat TugrulZeynep Baharoglu @zeynepbaharoglu.bsky.social · 27/08/2025E. Coli with linear growth 🦠🤯 #micdosky "linear proliferation for a finite number of generations" where only one daughter cell continues to divide, with split cyaA making cAMP only in one daughter cell. www.biorxiv.org/content/10.1...biorxiv.orgEngineering non-exponential proliferation in Escherichia coli using functionalized protein aggregatesUncurbed exponential proliferation might not always be required for genetically modified microorganisms, and might even cause unpredictable liabilities in their behavior and impact. We therefore const... 0157
Murat Tugrul @mtugrul.bsky.social · 27/08/2025We celebrated my PhD advisor Nick Barton’s 70th bday at IST Austria. I was lucky to have been his student: his wisdom, guidance, freedom and support shaped me as a scientist and beyond. Thank you Nick and happy birthday. 000
Reposted by Murat TugrulPleuni Pennings @pleunipennings.bsky.social · 19/08/2025www.theguardian.com/commentisfre...theguardian.comThere's a word for the EU's inaction over Gaza: racism | Shada IslamEurope frames the suffering of Palestinians in Gaza as a humanitarian crisis rather than a deliberate political choice. There will be a moral reckoning, says Shada Islam, a commentator on EU affairs 061
Murat Tugrul @mtugrul.bsky.social · 21/07/2025I could not attend #EEBST2025 this year, but proud to see Metehan Kara (MSc student @TUM) present our upcoming work on stochastic DNA damage and repair dynamics under radiation! He’s now a EkoEvoTurkey society member and on determined track toward a career in astrobiology. 000
Murat Tugrul @mtugrul.bsky.social · 16/07/2025I keep making this mistake: “Istanbul -> Statistical” Physics Days ;) 000
Reposted by Murat TugrulEvolDir @evoldir.bsky.social · 16/07/2025The Spanish Society of Evolutionary Biology's Biennial Meeting will be in Valencia from Jan 21-23, 2026. Submit abstracts by Sept 15. More info: sesbe2026.es/programme #conferencesesbe2026.esProgramme – SESBE 2026Programme – SESBE 2026 021
Murat Tugrul @mtugrul.bsky.social · 16/07/2025Great to reconnect with Turkish physicists at Istanbul Physics Days. I shared my work on damage accumulation in single cells and its population impact. Thanks to the organizers & Kadir Has University, a remarkable corner in old city: Merhaba Cibali, Kalimera Fener, Shalom Balat… unforgettable.. 100
Reposted by Murat TugrulScience Magazine @science.org · 05/07/2025What do you see when you stare at this grid of line segments: a series of rectangles, or a series of circles? The way you perceive this optical illusion may tie back to the visual environment that surrounds you, a recent preprint suggests. scim.ag/4kTxbmd 96214
Reposted by Murat TugrulEMBO @embo.org · 02/07/2025From theory to practice — explore #computational approaches and #AI developments at EMBO Practical Course "Integrative modelling of biomolecular interactions" in Izmir, Türkiye, 28 September–3 October 2025. Deadline: 10 July meetings.embo.org/event/25-bio... #EMBObiomolInteractions #EMBOevents 🧪 021
Reposted by Murat TugruleLife @elife.bsky.social · 01/07/2025How do cells clean up misfolded proteins when they divide? This study finds that the cleanup crew includes the ER chaperone BiP and the proteasome, and kicks in right as cells finish dividing. Surprisingly, one major cell cycle regulator isn’t involved. buff.ly/ER1WZYq 0123
Reposted by Murat TugrulJoao Pedro Magalhaes @jpsenescence.bsky.social · 01/07/2025New paper on theories of ageing 🚨 I introduce the major mechanistic theories of ageing in light of recent findings and discuss the fundamental nature of the ageing process. Theoretical work is more important than ever in biology, particularly in ageing research. www.nature.com/articles/s41...nature.comAn overview of contemporary theories of ageing - Nature Cell BiologyThis Review provides an overview of modern mechanistic theories and critically examines two main groups of ageing theories—error and program based—in the context of ageing patterns, genetic manipulati... 0148
Reposted by Murat TugrulRicard Solé @ricardsole.bsky.social · 30/06/2025The climate science predictions from 30 years ago are becoming a reality, and we are running out of time. While we should be investing in this, a handful of billionaire bullies are pushing us in the opposite direction. We need to stop them, starting from challenging the disinformation they create. 0349
Reposted by Murat TugrulNature @nature.com · 27/06/2025First independent survey of deaths in Gaza reports more than 80,000 fatalities The results align with other efforts to count the number of people killed amid the ongoing conflict. go.nature.com/44nH0lago.nature.comFirst independent survey of deaths in Gaza reports more than 80,000 fatalitiesResults align with other efforts to count the number of people killed amid the ongoing conflict. 6147126
Reposted by Murat TugruleLife @elife.bsky.social · 28/06/2025Drug resistance genes in #Salmonella can differ around the world. For instance, N. American strains can have stronger resistance than those in Australia. Researchers are hoping this can tell us how to fight antibiotic resistance #AMRbuff.lyResearching Salmonella drug resistanceRegional differences in drug resistance genes in one type of Salmonella bacteria may help scientists develop new treatment or prevention approaches in humans. 042
Murat Tugrul @mtugrul.bsky.social · 06/06/2025Huge thanks to the SMTPB @smtpb.bsky.social 2025 meeting organisers and everyone who made the meeting so inspiring — great science, great people. Grateful to NITMB @nitmb.bsky.social for hosting us so warmly in Chicago! 171
Reposted by Murat TugrulI2SysBio @i2sysbio.es · 31/05/2025Marcos Rodríguez, Irene Cantallops, Pilar Domingo-Calap @pilardomingoc.bsky.social & Josep Sardanyés @josepsardanyes.bsky.social from I2SysBio published a paper about quantifying dynamics of #Klebsiella and its #phages, focused on phage-resistant mutants 🦠🧪 #microsky @csic.es @ucciuv.bsky.social 053
Reposted by Murat TugrulbioRxiv SysBio @biorxiv-sysbio.bsky.social · 26/05/2025Bursty Gene Expression in Single Cells and Expanding Populations: A Discrete Approach www.biorxiv.org/content/10.1101/202… 011
Reposted by Murat TugrulSTCmicrobeblog @stcmicrobeblog.bsky.social · 21/05/2025yes, noah, this 𝗶𝘀 cool! #MicroSky afaik only 𝘉𝘰𝘳𝘳𝘦𝘭𝘪𝘢 keeps their flagella closer to their body: in the periplasm 😉 4216