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Murat Tugrul

@mtugrul.bsky.social
141 followers 183 following 27 posts

Physics/Biology/Education. Postdoc at HU-Berlin. Bacterial GeneRegulation, Evolution, Ageing, Biophysical & Mathematical Modelling, and many more.

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Murat Tugrul @mtugrul.bsky.social · 20/07/2026
July has become my “conference month.” After two inspiring meetings in Turkey (statistical physics in Istanbul and evolution & ecology in Mersin), I’m already off again to Ireland for #MMEE2026 in Cork. Looking forward to be immersed in my real niche: mathematical modelling of evolution and ecology
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SMTPB @smtpb.bsky.social · 14/07/2026
Save the date! The next SMTPB conference will take place May 3-6, 2027, at Stanford University. Make sure you're on the mailing list to stay in the loop for updates - reach out to info@smtpb.org.
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Murat Tugrul @mtugrul.bsky.social · 26/05/2026
Join our workshop on Mathematical & Evolutionary Systems Biology on July 4–6, 2026 in Mersin, Turkey Target: Phys, Math & Bio students/postdocs Topics: From gene regulatory networks to Wright-Fisher population genetic models with hands-on derivations and coding eebst.ekoevo.org/2026-worksho...
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Shiladitya Banerjee @shilabanerjee.bsky.social · 15/05/2026
1/ Can a single bacterium learn? No brain, no neurons, just one cell deciding what to do next. Our new paper says yes, and the cell's internal machinery turns out to compute exactly like a recurrent neural network. 🔗 journals.aps.org/prxlife/abstract/10.1103/5zbg-8vll
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Susanne Foitzik @temnothorax.bsky.social · 24/04/2026
Save the date and join us next March for the GEM Evolution Meeting😀
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EvolDir @evoldir.bsky.social · 21/04/2026
📣 EvolDir is now managed by @eseb.bsky.social! We are delighted to be taking the reins and express our gratitude to both Brian Golding who began this service to the community in the mid-1980s and to @rdmpage.bsky.social who ran this account until now 👏 You can now find evoldir here: evoldir.net
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Murat Tugrul @mtugrul.bsky.social · 30/03/2026
I’m in Turkey for two weeks for a family visit and a few academic visits. I’ll be giving talks at: - Mar 30, 14:40 — METU, Ankara - Apr 1, 11:00 — Bilkent / UNAM, Ankara - Apr 9, 14:30 — Koç Uni., Istanbul If you’re around, feel free to join or reach out. Happy to connect and discuss.
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Murat Tugrul @mtugrul.bsky.social · 27/03/2026
Mpemba effect is just cool… amazing…
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Anuraag Bukkuri @evo-eco-onco.bsky.social · 16/03/2026
Check out our paper in #EMPH that integrates multiplex immunofluorescence imaging with manifold learning to develop life history enlightened therapies to prevent hepatocellular carcinoma! 🎉 academic.oup.com/emph/advance... Had a blast working on this with @wstallaert.bsky.social & Andy Duncan!
academic.oup.com
Life history enlightened therapies: cell cycle mapping to identify molecular targets to prevent hepatocellular carcinoma
AbstractBackground and objectives. Life history enlightened therapies (LHETs) were originally developed in cancer to combat therapeutic resistance by targe
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MMEE @mmee-int.bsky.social · 03/03/2026
For the MMEE 2026 in Cork www.ucc.ie/en/matsci/ev... note the updated deadline! Submission of talks and poster presentations: March 30th, 2026.
ucc.ie
Mathematical Models in Ecology and Evolution | University College Cork
Learn, Study and Research in UCC, Ireland's first 5 star university. Our tradition of independent thinking will prepare you for the world and the workplace in a vibrant, modern, green campus.
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Lilly Cummins @lillycummins.bsky.social · 02/03/2026
I’ve spent a lot of time over the past two years thinking about genome evolution and how recent research revealing complex gene-gene interactions has complicated traditional ‘gene-centric’ genomic approaches to evolution. So here is a review that consolidates these thoughts! rdcu.be/e6pHY
rdcu.be
Epistasis and co-adaptation in bacterial genome evolution
Nature Reviews Genetics - Bacterial genome evolution is shaped by epistasis, which can constrain or promote specific evolutionary paths. The authors review how integrating the effects of epistatic...
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bioRxiv Microbiology @biorxiv-microbiol.bsky.social · 23/02/2026
DNA replication initiation causally sets the added mass for cell division in Escherichia coli www.biorxiv.org/content/10.64898/20…
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EvolDir @evoldir.bsky.social · 26/01/2026
Join the symposium "The genetic basis of evolutionary rescue" at SMBE 2026 in Copenhagen (June 28 - July 2). Submit abstracts by Feb 3. More info: smbe2026.org. Organizers: Matthew Osmond & Hildegard Uecker. #conference
smbe2026.org
Home - SMBE 2026 - Copenhagen Denmark
SMBE 2026 The Annual Meeting of the Society for Molecular Biology & Evolution 28 June – 2 July 2026, Copenhagen General Information Registraion Programme Abstract Submission Latest UPDATE → Abstract submission and Award application is open – See more, submit and apply here. → Registration is open – Go to the registration information and sign up […]
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Amir Mitchell @amitchell.bsky.social · 22/12/2025
Our recent paper in npj Antimicrobials and Resistance is a great example of scientific serendipity: after staring at thousands of bacterial growth curves over many studies, we started wondering whether the curve shapes themselves carry mechanistic information 1/9 🦠🧪 www.nature.com/articles/s44...
nature.com
Predicting drug inactivation by changes in bacterial growth dynamics - npj Antimicrobials and Resistance
npj Antimicrobials and Resistance - Predicting drug inactivation by changes in bacterial growth dynamics
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EMBO @embo.org · 19/12/2025
Join the dialogue on the #evolution of cellular processes at the EMBO Workshop "The rules of the game: Biophysical & molecular principles in cellular evolution" in #Oeiras, PT, 2–5 June 2026. Deadline: 1 March meetings.embo.org/event/26-cellular… #EMBORulesOfTheGame #EMBOevents 🧪
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#SingleCell preprints @prepub-singlecell.bsky.social · 08/12/2025
Exactly Solvable Population Model with Square-Root Growth Noise and Cell-Size Regulation #SingleCell 🧪🧬🖥️ arxiv.org/abs/2512.05190
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Pleuni Pennings @pleunipennings.bsky.social · 06/12/2025
This is incredible - even now in the US - this story of a tenured prof losing her job over protests is worse than I have come to expect. She participated in a peaceful protest against the genocide in Gaza. www.theguardian.com/us-news/2025...
theguardian.com
Tenured US professor fired over pro-Palestinian protests contests dismissal
Sang Hea Kil is first tenured faculty member fired from a public university in connection to the protests
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Maria Dzunkova @dzunkovam.bsky.social · 06/12/2025
My @i2sysbio.es colleagues Lucas Mora, Rafael Sanjuan @rafa-sanjuan.bsky.social and Pilar Domingo Calap @pilardomingoc.bsky.social published a paper about reversible phenotypic resistance to phages in Klebsiella. 👏👏 Congratulations! 🧬🖥🧪🦠🧫 #microsky #viruses #phages www.cell.com/iscience/ful...
cell.com
Reversible phenotypic resistance to phage infection via capsule downregulation in Klebsiella pneumoniae
Molecular biology; Microbiology; Cell biology
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Murat Tugrul @mtugrul.bsky.social · 06/12/2025
Istanbul people, an Astronomer needs your help!
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bioRxiv SysBio @biorxiv-sysbio.bsky.social · 01/12/2025
Conserved Master Regulators Orchestrate Cellular Reprogramming-Induced Rejuvenation www.biorxiv.org/content/10.1101/202…
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Murat Tugrul @mtugrul.bsky.social · 25/11/2025
Great postdoc opportunity in ageing, biophysical modelling, and ML approaches. Javier Buceta is an excellent scientist/mentor, i2sysbio is a fantastic institute, Valencia is an outstanding place to live and work. If you’re interested, reach out to @javierbuceta.bsky.social before it’s too late!
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Nature Microbiology @natmicrobiol.nature.com · 18/11/2025
#Review Bacteria can “remember” past environments through genetic & biochemical imprints helping them adapt and thrive! 🦠🧠 #MicroSky www.nature.com/articles/s41...
nature.com
Exploring the concept of bacterial memory - Nature Microbiology
This Perspective discusses the concept, mechanisms and evidence for memory in bacteria at individual and community levels.
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#SingleCell preprints @prepub-singlecell.bsky.social · 10/11/2025
Identifying Drift, Diffusion, and Causal Structure from Temporal Snapshots #SingleCell 🧪🧬🖥️ arxiv.org/abs/2410.22729
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Gina Baucom @gbaucom.bsky.social · 11/10/2025
I'm the incoming SSE president and am behind this idea -- if you're interested in putting together an app and have questions, pls reach out!
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Murat Tugrul @mtugrul.bsky.social · 07/10/2025
Looking forward to it…
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Murat Tugrul @mtugrul.bsky.social · 29/09/2025
Big congrats to my first Master’s student, Metehan, on his successful defence last Friday! He worked on stochastic DNA damage dynamics under radiation, laying the groundwork for a manuscript. Now he’s off to a PhD in Astrobiology. Wishing him success ahead!
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bioRxiv Evolutionary Biology @biorxiv-evobio.bsky.social · 19/09/2025
Evidence for Neolithic acquisition of the high pathogenic island by Escherichia coli followed by recent selection www.biorxiv.org/content/10.1101/202…
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Nature @nature.com · 28/08/2025
For life to emerge on Earth, peptides must first have formed without the aid of enzymes — but how? Reactions of sulfur-containing molecules might have been key go.nature.com/4oX04jC
go.nature.com
Origins of life: the molecules that could have unlocked peptide synthesis
For life to emerge on Earth, peptides must first have formed without the aid of enzymes — but how? Reactions of sulfur-containing molecules might have been key.
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Zeynep Baharoglu @zeynepbaharoglu.bsky.social · 27/08/2025
E. Coli with linear growth 🦠🤯 #micdosky "linear proliferation for a finite number of generations" where only one daughter cell continues to divide, with split cyaA making cAMP only in one daughter cell. www.biorxiv.org/content/10.1...
biorxiv.org
Engineering non-exponential proliferation in Escherichia coli using functionalized protein aggregates
Uncurbed exponential proliferation might not always be required for genetically modified microorganisms, and might even cause unpredictable liabilities in their behavior and impact. We therefore const...
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Murat Tugrul @mtugrul.bsky.social · 27/08/2025
We celebrated my PhD advisor Nick Barton’s 70th bday at IST Austria. I was lucky to have been his student: his wisdom, guidance, freedom and support shaped me as a scientist and beyond. Thank you Nick and happy birthday.
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Murat Tugrul @mtugrul.bsky.social · 26/08/2025
Quantum gets into the genes…:)
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Pleuni Pennings @pleunipennings.bsky.social · 19/08/2025
www.theguardian.com/commentisfre...
theguardian.com
There's a word for the EU's inaction over Gaza: racism | Shada Islam
Europe frames the suffering of Palestinians in Gaza as a humanitarian crisis rather than a deliberate political choice. There will be a moral reckoning, says Shada Islam, a commentator on EU affairs
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Murat Tugrul @mtugrul.bsky.social · 21/07/2025
I could not attend #EEBST2025 this year, but proud to see Metehan Kara (MSc student @TUM) present our upcoming work on stochastic DNA damage and repair dynamics under radiation! He’s now a EkoEvoTurkey society member and on determined track toward a career in astrobiology.
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EvolDir @evoldir.bsky.social · 16/07/2025
The Spanish Society of Evolutionary Biology's Biennial Meeting will be in Valencia from Jan 21-23, 2026. Submit abstracts by Sept 15. More info: sesbe2026.es/programme #conference
sesbe2026.es
Programme – SESBE 2026
Programme – SESBE 2026
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Murat Tugrul @mtugrul.bsky.social · 16/07/2025
Great to reconnect with Turkish physicists at Istanbul Physics Days. I shared my work on damage accumulation in single cells and its population impact. Thanks to the organizers & Kadir Has University, a remarkable corner in old city: Merhaba Cibali, Kalimera Fener, Shalom Balat… unforgettable..
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Science Magazine @science.org · 05/07/2025
What do you see when you stare at this grid of line segments: a series of rectangles, or a series of circles? The way you perceive this optical illusion may tie back to the visual environment that surrounds you, a recent preprint suggests. scim.ag/4kTxbmd
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EMBO @embo.org · 02/07/2025
From theory to practice — explore #computational approaches and #AI developments at EMBO Practical Course "Integrative modelling of biomolecular interactions" in Izmir, Türkiye, 28 September–3 October 2025. Deadline: 10 July meetings.embo.org/event/25-bio... #EMBObiomolInteractions #EMBOevents 🧪
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eLife @elife.bsky.social · 01/07/2025
How do cells clean up misfolded proteins when they divide? This study finds that the cleanup crew includes the ER chaperone BiP and the proteasome, and kicks in right as cells finish dividing. Surprisingly, one major cell cycle regulator isn’t involved. buff.ly/ER1WZYq
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Joao Pedro Magalhaes @jpsenescence.bsky.social · 01/07/2025
New paper on theories of ageing 🚨 I introduce the major mechanistic theories of ageing in light of recent findings and discuss the fundamental nature of the ageing process. Theoretical work is more important than ever in biology, particularly in ageing research. www.nature.com/articles/s41...
nature.com
An overview of contemporary theories of ageing - Nature Cell Biology
This Review provides an overview of modern mechanistic theories and critically examines two main groups of ageing theories—error and program based—in the context of ageing patterns, genetic manipulati...
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Ricard Solé @ricardsole.bsky.social · 30/06/2025
The climate science predictions from 30 years ago are becoming a reality, and we are running out of time. While we should be investing in this, a handful of billionaire bullies are pushing us in the opposite direction. We need to stop them, starting from challenging the disinformation they create.
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Nature @nature.com · 27/06/2025
First independent survey of deaths in Gaza reports more than 80,000 fatalities The results align with other efforts to count the number of people killed amid the ongoing conflict. go.nature.com/44nH0la
go.nature.com
First independent survey of deaths in Gaza reports more than 80,000 fatalities
Results align with other efforts to count the number of people killed amid the ongoing conflict.
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eLife @elife.bsky.social · 28/06/2025
Drug resistance genes in #Salmonella can differ around the world. For instance, N. American strains can have stronger resistance than those in Australia. Researchers are hoping this can tell us how to fight antibiotic resistance #AMR
buff.ly
Researching Salmonella drug resistance
Regional differences in drug resistance genes in one type of Salmonella bacteria may help scientists develop new treatment or prevention approaches in humans.
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Murat Tugrul @mtugrul.bsky.social · 06/06/2025
Huge thanks to the SMTPB @smtpb.bsky.social 2025 meeting organisers and everyone who made the meeting so inspiring — great science, great people. Grateful to NITMB @nitmb.bsky.social for hosting us so warmly in Chicago!
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I2SysBio @i2sysbio.es · 31/05/2025
Marcos Rodríguez, Irene Cantallops, Pilar Domingo-Calap @pilardomingoc.bsky.social & Josep Sardanyés @josepsardanyes.bsky.social from I2SysBio published a paper about quantifying dynamics of #Klebsiella and its #phages, focused on phage-resistant mutants 🦠🧪 #microsky @csic.es @ucciuv.bsky.social
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bioRxiv SysBio @biorxiv-sysbio.bsky.social · 26/05/2025
Bursty Gene Expression in Single Cells and Expanding Populations: A Discrete Approach www.biorxiv.org/content/10.1101/202…
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STCmicrobeblog @stcmicrobeblog.bsky.social · 21/05/2025
yes, noah, this 𝗶𝘀 cool! #MicroSky afaik only 𝘉𝘰𝘳𝘳𝘦𝘭𝘪𝘢 keeps their flagella closer to their body: in the periplasm 😉
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Murat Tugrul @mtugrul.bsky.social · 15/05/2025
This is interesting! AlphaEvolve (LLM and Evolutionary Agent) by researchers from Google DeepMind Blog: deepmind.google/discover/blo... Paper: storage.googleapis.com/deepmind-med...
deepmind.google
AlphaEvolve: A Gemini-powered coding agent for designing advanced algorithms
New AI agent evolves algorithms for math and practical applications in computing by combining the creativity of large language models with automated evaluators
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EkoEvo @ekoevo.bsky.social · 28/04/2025
Hi there, #ScienceBluesky! Have you heard about us yet? If you have not, here is a flood about us: We, The Ecology and Evolutionary Biology Society of Turkey (EkoEvo), aim to promote scientific research in the fields of ecology and evolutionary biology in Turkey. +
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Murat Tugrul @mtugrul.bsky.social · 07/04/2025
Our paper finally out! “Demographic consequences of damage dynamics in single-cell aging” in PRR We developed a cellular damage model linking damage noise & partitioning asymmetry to aging patterns in single cells, helping explain nonexponential mortality observed in E. coli go.aps.org/42hWJRK
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Yusuf Sarfati @yusufsarfati.bsky.social · 21/03/2025
Third day of protests after Imamoglu's detention. Students march to municipality building in Sarachane after a demonstration in Istanbul university. ODTU students in Ankara also at the forefronts. Government limits public transportation to undermine protests. bsky.app/profile/t24....
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