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Mozammel Hoque

@mozammel.bsky.social
255 followers 223 following 42 posts

Playing with Unseen as Postdoctoral Research Associate Diane lab @AIMI_UTS exploiting molecular interaction of pathogenic bacteria and their predators. scholar.google.com/citations?user=L…

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Reposted by Mozammel Hoque
Lucas Moriniere @lucasmoriniere.bsky.social · 30/09/2026
Attention, phage friends! Our new work on predicting phage-host interactions is out in Nature Microbiology since yesterday! 👉 www.nature.com/articles/s41...
nature.com
Phylogeny-agnostic strain-level prediction of phage–host interactions from genomes using machine learning - Nature Microbiology
This platform identifies phages capable of infecting specific bacterial strains using genome sequences alone and could enable rational phage-therapy design and precision microbiome engineering.
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Reposted by Mozammel Hoque
Julia Frunzke @frunzkelab.bsky.social · 19/09/2026
Proudly present our fantastic collaborative effort within SFB 1535 "Microbial networking" @mibinet.bsky.social now out in The ISME Journal. "Context-dependent siderophore exploitability shapes microbial community structure" academic.oup.com/ismej/advanc... @hhu.de @fz-juelich.de @dfg.de
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Earlham Institute @earlhaminst.bsky.social · 26/09/2026
Drawing on existing knowledge and success stories from the community, researchers are looking to tackle major technical barriers in protist sequencing, including extraction, cell lysis, and DNA amplification methods. 🦠🧬 #protists #sequencing
okt.to
Unlocking the potential of protist research
A new collaboration will tackle major technical challenges currently limiting protist genomics, helping to unlock the potential of protist research for biomanufacturing, sustainable agriculture and environmental applications.
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Mozammel Hoque @mozammel.bsky.social · 20/09/2026
1/ New paper out in ISME Communications now in full version. Bacteria rarely live alone in nature, so we ran a 6-month evolution experiment asking what happens when species are forced to share the same biofilm. Turns out, company changes everything. 🧵 doi.org/10.1093/isme...
doi.org
Mixed-species interactions constrain diversification and shape biofilm evolution
Abstract. Experimental evolution provides a powerful framework for dissecting how ecological interactions shape adaptive trajectories. Here, we evolved Kle
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Reposted by Mozammel Hoque
Vaughn Cooper @vscooper.micropopbio.org · 20/09/2026
Now published from a fun collaboration, please see 🧵 academic.oup.com/ismecommun/a...
academic.oup.com
Mixed-species interactions constrain diversification and shape biofilm evolution
Abstract. Experimental evolution provides a powerful framework for dissecting how ecological interactions shape adaptive trajectories. Here, we evolved Kle
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Reposted by Mozammel Hoque
Ákos T Kovács @evolvedbiofilm.bsky.social · 20/09/2026
Outer membrane changes enable evolutionary escape from bacterial predation ISME Journal by @subhammridha.bsky.social et al from @simonahuwiler.bsky.social and @rkmicrobes.bsky.social academic.oup.com/ismej/advanc...
academic.oup.com
Outer membrane changes enable evolutionary escape from bacterial predation
Abstract. Antimicrobial resistance (AMR) is a threat to modern medicine. To combat AMR pathogens, natural predators like bacteriophages and predatory bacte
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Mozammel Hoque @mozammel.bsky.social · 17/09/2026
🦠World Microorganism Day! 🔬 This photo is from a three-species synthetic biofilm community that we were working on, composed of: 🧫 Pseudomonas aeruginosa 🧫 Pseudomonas protegens 🧫 Klebsiella pneumoniae
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Reposted by Mozammel Hoque
Stephen Turner @stephenturner.us · 16/09/2026
Reimagining research papers as interactive and reliable AI agents www.nature.com/articles/s41...
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Mozammel Hoque @mozammel.bsky.social · 13/09/2026
🌍💧 Another exciting water research paper from our group! Led by our fantastic PhD student Huizi Yang. A great contribution to understanding what wastewater can reveal about microbial ecology and population health. #Wastewater #Metagenomics #Microbiome #PublicHealth #WaterResearch
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MicroSeq2026 @microseqasm.bsky.social · 28/08/2026
✨ #MicroSeq2026 Plenary Highlight! ✨ 🧵(1/4) Dr @ebony-monson.bsky.social is an NHMRC Emerging Leadership Fellow based at La Trobe. Her research career has been nothing short of incredible, with ~$950k in research funding secured, 20 publications, and >40 awards - all within the last 5 years!
A portrait of Dr Ebony Monson decorated with cartoons of microbes. Dr Ebony Monson is based at La Trobe University and will be speaking at the MicroSeq online conference.
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Mozammel Hoque @mozammel.bsky.social · 27/08/2026
1/5 🎉 Thrilled to share my first paper since moving to the School of Engineering at UOW, published in Water Research! “Workflow determinants of recovery efficiency in wastewater-based surveillance of respiratory viruses” 🔗 www.sciencedirect.com/science/arti... Quick thread 👇
sciencedirect.com
Workflow determinants of recovery efficiency in wastewater-based surveillance of respiratory viruses
Wastewater-based epidemiology (WBE) is becoming a key tool for population-level surveillance of respiratory viruses, yet variability in recovery effic…
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MicroSeq2026 @microseqasm.bsky.social · 25/08/2026
✨ #MicroSeq2026 Plenary Highlight! ✨ 🧵(1/4) Dr Gustavo Espinoza-Vergara is an ARC DECRA Fellow with a focus on how environmental protozoa can influence bacterial persistence, transmission and infectivity. Register 👉 trybooking.com/DNRBW
A portrait of Dr Gustavo Espinoza-Vergara decorated with cartoons of microbes. Dr Gustavo Espinoza-Vergara is based at the University of Technology Sydney and will be speaking at the MicroSeq online conference.
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Mozammel Hoque @mozammel.bsky.social · 15/08/2026
doi.org/10.1021/acs....
doi.org
Chlorination Enhances Bacterial Invasion and Conjugative Transfer of Antibiotic Resistance Genes in Biofilms
Abstract. Biofilms are widespread in water distribution systems and consist of bacterial cells with extensive cell-to-cell contact, a prerequisite for plas
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Mozammel Hoque @mozammel.bsky.social · 14/08/2026
Pilot-scale demonstration and feasibility study of nutrient recovery from human urine in a membrane bioreactor under acidic pH and elevated MLSS conditions www.sciencedirect.com/science/arti...
sciencedirect.com
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Reposted by Mozammel Hoque
Alejandro Tejada Arranz @atejadaarranz.bsky.social · 08/08/2026
Have a look at our latest review on intracellular P. aeruginosa populations! @basler-lab.bsky.social @biozentrum.unibas.ch @nccr-antiresist.bsky.social
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Reposted by Mozammel Hoque
MicroSeq2026 @microseqasm.bsky.social · 12/08/2026
We are delighted to announce our #MicroSeq2026 plenary speakers! Dr Ash Porter, Dr Gustavo Espinoza-Vergara, @susanaortizb.bsky.social, Dr Rhys White, and @ebony-monson.bsky.social! We’ll be treated to five excellent talks across September 2-3. We can’t wait! Register below👇 trybooking.com/DNRBW
MicroSeq2026 is an online meeting being held on September 2nd and 3rd, focused on research being conducted on sequencing data generated from microbiological samples (bacteria, fungi, and viruses). MicroSeq2026 will feature five plenary speakers: Dr Ash Porter from Dalhousie University, Dr Gustavo Espinoza-Vergara from the University of Technology Sydney, Dr Susana Ortiz-Baez from The University of Sydney, Dr Rhys White from the New Zealand Institute for Public Health and Forensic Science, and Dr Ebony Monson from La Trobe University. Their profile pictures are decorated with cartoons of microbes.
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Mozammel Hoque @mozammel.bsky.social · 03/08/2026
📢 Due to popular demand, #MicroSeq2026 abstract submissions have been extended! 🗓️ New deadline: 7 August 2026 Don’t miss your chance to present your research and connect with the sequencing and microbiology community. Submit your abstract: www.microseqconference.com #Microbiology #Bioinformatics
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Stephen Turner @stephenturner.us · 29/07/2026
cnsplots: Publication-Ready Scientific Plots for Cell, Nature, and Science Journals github.com/faridrashidi... really cool work here from a postdoc at NIH.
github.com
GitHub - faridrashidi/cnsplots: 🎨 Toolkit for generating publication-quality plots for Cell, Nature and Science journals
🎨 Toolkit for generating publication-quality plots for Cell, Nature and Science journals - faridrashidi/cnsplots
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MicroSeq2026 @microseqasm.bsky.social · 23/07/2026
✨NEW IN 2026✨The Outstanding Outreach award is a $100 cash prize for the best talk including a science communication aspect. Pedagogy, events, school programs, citizen science - all talks are eligible! Show us what you’ve been up to at #MicroSeq2026! trybooking.com/events/landing/1610956
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MicroSeq2026 @microseqasm.bsky.social · 17/07/2026
Keep those abstracts coming in! In the meantime, meet your #MicroSeq2026 committee! 👋 All of us are stoked to see you on September 2-3! Register here 👇 trybooking.com/events/landing/1610956
MicroSeq2026 is an online meeting being held on September 2nd and 3rd, focused on research being conducted on sequencing data generated from microbiological samples (bacteria, fungi, and viruses). The organising committee for 2025 comprises seven researchers from Victoria, New South Wales, and Western Australia.
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MicroSeq2026 @microseqasm.bsky.social · 09/07/2026
Have you registered for #MicroSeq2026? Are you keen to get even MORE involved? 🤔 Great news! We're seeking chairpeople for each session! To submit an EOI, hit up our DMs or send us an email at MicroSeqConference@gmail.com Register here👇 trybooking.com/events/landing/1610956
MicroSeq2026 is seeking expressions of interests for chairing sessions during the conference by DM on social media or emailing microseqconference@gmail.com. MicroSeq2026 is an online meeting being held on September 2nd and 3rd, focused on research being conducted on sequencing data generated from microbiological samples (bacteria, fungi, and viruses). Participants can register at microseqconference.com.  MicroSeq2026 is supported by The Australian Society for Microbiology, the Australasian Virology Society, and Microbial Genomics.
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MicroSeq2026 @microseqasm.bsky.social · 30/06/2026
🗓️Little reminder: abstract submission opens NEXT MONDAY! 🥳
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Michael Sauer @michlwien.bsky.social · 23/06/2026
We are out! Yay! #microbiology doi.org/10.1093/fems...
doi.org
The plastisphere: not a unique biofilm but a unifying concept for the interdisciplinary plastic biofilm research community
Microbial communities on plastics are not fundamentally different from other biofilms, yet plastics create long-lasting, mobile habitats that change how mi
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Reposted by Mozammel Hoque
Mike Blazanin @mikeblazanin.bsky.social · 05/06/2026
Later today! #ASMicrobe
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Reposted by Mozammel Hoque
Evgenii Protasov @evgenii-protasov.bsky.social · 08/05/2026
Adaptation to a host-associated lifestyle is associated with convergent loss of flagella-related genes in Pseudomonadota #microbiology #flagella #Pseudomonas link.springer.com/article/10.1...
link.springer.com
Adaptation to a host-associated lifestyle is associated with convergent loss of flagella-related genes in Pseudomonadota - BMC Genomics
Background Host-associated bacteria must balance the benefits of motility through flagella against the offsets of energetic costs and immune surveillance. Understanding the interplay of evolutionary f...
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Reposted by Mozammel Hoque
Matthias C. Rillig @mrillig.bsky.social · 06/04/2026
Paper just out in ISME J Wang et al. AHL-mediated quorum sensing drives plastisphere formation and elevates pathogenic potential academic.oup.com/ismej/advanc...
academic.oup.com
AHL-mediated quorum sensing drives plastisphere formation and elevates pathogenic potential
Abstract. The biofilm colonizing plastic debris, termed ‘the plastisphere’, is of growing global concern due to escalating plastic pollution. However, the
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Reposted by Mozammel Hoque
Cameron Thrash @jcamthrash.bsky.social · 13/03/2026
A Foundation for Advancing Studies of the Biodegradation of Polyethylene Surrogates by Environmental and Model Laboratory Microbes enviromicro-journals.onlinelibrary.wiley.com/doi/10.1111/... #jcampubs
enviromicro-journals.onlinelibrary.wiley.com
A Foundation for Advancing Studies of the Biodegradation of Polyethylene Surrogates by Environmental and Model Laboratory Microbes
A polyethylene surrogate sample containing paraffin, polywax and polyethylene was exposed to selected microbes identified in this study. This image shows the surface of this surrogate following a six....
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Reposted by Mozammel Hoque
Cameron Thrash @jcamthrash.bsky.social · 13/03/2026
The Polymer‐Plastisphere‐Function Nexus Links to Divergent Biodegradation of Microplastics During Composting enviromicro-journals.onlinelibrary.wiley.com/doi/10.1111/... #jcampubs
enviromicro-journals.onlinelibrary.wiley.com
The Polymer‐Plastisphere‐Function Nexus Links to Divergent Biodegradation of Microplastics During Composting
Biodegradable microplastics undergo rapid degradation through deterministic enrichment of diverse degrading microbial consortia and multi-enzyme synergy on their surfaces. In contrast, the degradatio...
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Reposted by Mozammel Hoque
SecureBio, Inc. @securebio.org · 11/03/2026
We hope this preprint serves as a catalyst for more untargeted wastewater metagenomics efforts, growing the systems and infrastructure needed to prevent emerging threats to human health. Link to preprint: doi.org/10.64898/202...
doi.org
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Solid Evidence @solidevidence.bsky.social · 07/03/2026
Happy to report that we submitted a new manuscript this week. The manuscript is abour our work untargeting wastewater sequencing as a technique for monitoring viral pathogens from wastewater. @lennijusten.bsky.social 1/ medrxiv.org/cgi/content/...
medrxiv.org
Deep untargeted wastewater metagenomic sequencing from sewersheds across the United States
Wastewater monitoring enables non-invasive, population-scale tracking of community infections independent of healthcare-seeking behavior and clinical diagnosis. Metagenomic sequencing extends this cap...
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Vaughn Cooper @vscooper.micropopbio.org · 01/03/2026
Given that clonal biofilms of single bacterial species rapidly diversify into niche specialists, how do biofilms of multiple species evolve? A 🧵 featuring new collaborative pubs: 1. www.biorxiv.org/content/10.6... 2. www.nature.com/articles/s41...
biorxiv.org
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Mozammel Hoque @mozammel.bsky.social · 28/02/2026
New preprint alert! We conducted a long-term evolution experiment to ask: How do species interactions shape adaptive evolution in microbial biofilms? #biofilm #LTEE www.biorxiv.org/content/10.6... 1/5
biorxiv.org
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Mozammel Hoque @mozammel.bsky.social · 28/01/2026
Our study analysing ~5,000 single-cell transcriptomes of Vibrio cholerae is now out in Frontiers in Microbiology! doi.org/10.3389/fmic...
doi.org
Frontiers | Single-cell RNA-seq reveals a key role for Vibrio cholerae Mak toxins in Tetrahymena pyriformis killing and bacterial survival
In the environment, Vibrio cholerae employs multiple strategies to resist predation by heterotrophic protozoa. For example, V. cholerae biofilms release toxi...
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Reposted by Mozammel Hoque
Emmanuele Severi @emmseveri.bsky.social · 24/01/2026
#microsky #phagesky #phage defence www.science.org/doi/10.1126/...
science.org
Bacteriophages mobilize bacterial defense systems via lateral transduction
Bacteriophages and PICIs spread bacterial defenses via lateral transduction, shaping microbial immunity and pathogen evolution.
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Mark Mandel @markjmandel.bsky.social · 05/01/2026
Registration is open for September’s Vibrio2026 conference in Berlin! event.fourwaves.com/vibrio2026/p...
event.fourwaves.com
Vibrio2026: The International Meeting on the Biology of Vibrios
Join Vibrio2026: The International Meeting on the Biology of Vibrios, September 13-16, 2026. Learn more on Fourwaves.
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Morten Kam Dahl Dueholm @mkddueholm.bsky.social · 05/12/2025
Protist–bacteria partnerships are more common in wastewater treatment plants than we thought. In this ISME communications paper, we uncovered widespread denitrifying endosymbionts inside ciliates, their global distribution, and their temporal dynamics across WWTPs.🦠 academic.oup.com/ismecommun/a...
academic.oup.com
Occurrence and temporal dynamics of denitrifying protist endosymbionts in the wastewater microbiome
Abstract. Effective wastewater treatment is of critical importance for preserving public health and protecting natural environments. Key processes in waste
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Luke Hillary @lukehillary.bsky.social · 27/11/2025
📢 New preprint is out on bioRxiv 📢: How much does virome prep influence our view of the human gut virome? Short answer: a lot. Long answer: doi.org/10.1101/2025... Different methods lead to distinct community structures, richness, and major virus-host abundance patterns. 🧵 1/5
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Mozammel Hoque @mozammel.bsky.social · 27/11/2025
By analysing microbial signatures from urine and catheters, we built a machine-learning tool that can distinguish harmful UTI-causing bacteria from harmless ones. This could help clinicians make better decisions about treatment and catheter changes, and importantly, avoid unnecessary antibiotics.
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Mozammel Hoque @mozammel.bsky.social · 27/11/2025
Thrilled to share our most challenging project yet! Our 3 years of longitudinal research, study on AI-based prediction of urinary tract infections (UTIs) in people with spinal cord injury is now published in Microbiome journal. Here’s the link to the paper 👇 link.springer.com/article/10.1...
link.springer.com
Prediction of symptomatic and asymptomatic bacteriuria in spinal cord injury patients using machine learning - Microbiome
Background Individuals with spinal cord injuries (SCI) frequently rely on urinary catheters to drain urine from the bladder, making them susceptible to asymptomatic and symptomatic catheter-associated...
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Mozammel Hoque @mozammel.bsky.social · 27/11/2025
doi.org/10.1016/j.bi...
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Mozammel Hoque @mozammel.bsky.social · 19/11/2025
All artifact? 😬 www.pnas.org/doi/10.1073/...
pnas.org
Fluorescein-based dyes are not valid reporters of oxidative stress in bacteria, and conclusions based on their use must be reconsidered | PNAS
Dihydrodichlorofluorescein derivatives have been employed as reporters of intracellular reactive oxygen species (ROS) in innumerable studies. Their...
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Mozammel Hoque @mozammel.bsky.social · 18/11/2025
Occurrence and temporal dynamics of denitrifying protist endosymbionts in the wastewater microbiome url: academic.oup.com/ismecommun/a...
academic.oup.com
Validate User
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Reposted by Mozammel Hoque
FEMS Journals @femsjournals.bsky.social · 12/11/2025
🚨 Top microbiology jobs. The FEMS opportunities board has new PhD, Postdocs , & Junior Research Group roles in Methane Flux, AI in Health, Marine Symbiosis, & Evolution. Apply here buff.ly/9r6E3Er or sign up for the monthly newsletter FEMS buff.ly/EQc3WTm .
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Stephen Turner @stephenturner.us · 12/11/2025
Claude scientific skills 🧬🖥️🧪 github.com/K-Dense-AI/c... 🧬 Bioinformatics & Genomics 🧪 Cheminformatics & Drug Discovery 🔬 Proteomics & Mass Spectrometry 🤖 Machine Learning & AI 🔮 Materials Science & Chemistry 📊 Data Analysis & Visualization
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Sebastian Schmidt @tsbschm.bsky.social · 31/10/2025
Great to see this finally published! Metalog: curated and harmonised contextual data for global metagenomics samples now out in @narjournal.bsky.social academic.oup.com/nar/advance-...
academic.oup.com
Metalog: curated and harmonised contextual data for global metagenomics samples
Abstract. Metagenomic sequencing enables the in-depth study of microbes and their functions in humans, animals, and the environment. While sequencing data
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Leighton Pritchard @widdowquinn.bsky.social · 27/10/2025
www.nature.com/articles/d41... "Researchers welcome the initiative…" - no I fucking don't! This idea is dumber than a sack of hammers. Basing any judgement on author position is crass - it captures very little of use and has no universal meaning.
nature.com
Google Scholar-based tool gives extra credit to first and last authors
Researchers welcome the initiative, but say it doesn’t go far enough to capture the nuance of researcher productivity and impact.
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Cameron Thrash @jcamthrash.bsky.social · 27/10/2025
A comprehensive review on microbial degradation of polyethylene plastics: ecotoxicity, deterioration process, recurrent intermediates and key enzymes involved link.springer.com/article/10.1... #jcampubs
link.springer.com
A comprehensive review on microbial degradation of polyethylene plastics: ecotoxicity, deterioration process, recurrent intermediates and key enzymes involved - Archives of Microbiology
Plastic contamination is a universal threat that affects the flora and fauna in the environment. This review focuses on biodegradation of polyethylene (PE). PE is a widely used plastic in food packagi...
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Mozammel Hoque @mozammel.bsky.social · 21/10/2025
Check out our work on biofilm degrading enzyme. 👉Crude preparation of a phage-encoded biofilm-dispersing factor expressed in E. coli and its potential application in bacteriological analysis of environmental water samples | Applied and Environmental Microbiology journals.asm.org/doi/10.1128/...
journals.asm.org
Crude preparation of a phage-encoded biofilm-dispersing factor expressed in E. coli and its potential application in bacteriological analysis of environmental water samples | Applied and Environmental...
In their aquatic reservoirs, bacteria often exist as biofilms and are difficult to accurately detect by culturing water samples. Such biofilms have been implicated in waterborne transmission of pathog...
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Prof Amy Cain @flamycain.bsky.social · 21/10/2025
Check out my PhD student Fiona Facey’s first first-author paper on finding microbes that can degrade multiple types of plastics in the Galleria mellonella gut microbiome 👇 enviromicro-journals.onlinelibrary.wiley.com/doi/10.1111/...
enviromicro-journals.onlinelibrary.wiley.com
Characterising the Multiple‐Plastic Degrading Strain of Bacillus subtilis GM_03 From the Galleria mellonella Microbiome
A novel strain of Bacillus subtilis has been isolated from plastic-fed Galleria mellonella larvae, which shows evidence of degradation of both LDPE and PU plastics. Genes potentially associated with ....
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Ákos T Kovács @evolvedbiofilm.bsky.social · 09/10/2025
Glad to share a collaboration with Yicen Lin's group at Kunming University of Science and Technology published in ISME Journal Synergistic biodegradation of polyethylene by experimentally evolved bacterial biofilms academic.oup.com/ismej/advanc... #MicrobiomeEcology at #LeidenBiology
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