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Anna Vasilevskaya

@loghyr.bsky.social
116 followers 158 following 15 posts

PhD student studying cortical computations in www.apredictiveprocessinglab.org

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Reposted by Anna Vasilevskaya
Eric Schares @eschares.bsky.social · 31/08/2026
🚨Update: Our analysis of global APC expenditure has now been expanded to cover more publishers (7 -> 14) and more years (2019-2025). We estimate $15B in APCs paid over seven years, $3.7B in 2025 alone. Elsevier crosses the $1B threshold by itself in 2025. arxiv.org/abs/2608.16322 #ScholComm
Line chart showing 5 biggest publishers from 2019-2025
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Helen Barron @helencbarron.bsky.social · 28/07/2026
***New preprint from the lab*** showing “Generative replay across hippocampal-neocortical circuits”. In sleep we show spiking sequences in V1 (sensory neocortex!) that represent information that has not been directly experienced www.biorxiv.org/content/10.6... @bndu.ox.ac.uk @ndcnoxford.bsky.social
biorxiv.org
Generative replay across hippocampal-neocortical circuits
To make flexible decisions, the brain needs to make inferences between events that were not directly experienced together. In sharp-wave ripple (SWR) events, during periods of rest and sleep, spiking ...
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Reposted by Anna Vasilevskaya
Reza Shadmehr @rezashadmehr.bsky.social · 28/07/2026
If an action results in error, each neuron requires an individualized teaching signal that guides change in its output. This is the credit assignment problem of learning. Are there neurons in the brain that can compute such a sophisticated teaching signal? Yes. www.biorxiv.org/content/10.6...
biorxiv.org
Climbing fibers encode the gradient of a loss function for the cerebellum
Neurons in the brain are often many synapses away from motoneurons, yet if a movement results in error, each distant neuron needs a teacher that considers its specific contribution to production of th...
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Roman Doronin @romodorro.bsky.social · 25/07/2026
How do psychedelics reorganize cortical communication at the circuit level? In our new paper with @georgkeller.bsky.social we look into how the psychedelic DOI breaks down cortical modularity, and map the underlying cortico-cortical and thalamo-cortical mechanisms in mice – a thread 1/10
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Thomas Akam @thomasakam.bsky.social · 15/06/2026
Why does dopamine ramp up during approach to predictable rewards? In this preprint with Luke Priestley, we explore the idea that dopamine ramps occur when reward predictions inferred using a world-model are used to train striatal cached values.
biorxiv.org
Dopamine ramps as a normative consequence of dual-process control
Midbrain dopamine neurons are thought to implement a temporal difference (TD) reward prediction error (RPE) that updates cached values stored in striatum. This has been challenged by evidence that dop...
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Reposted by Anna Vasilevskaya
MPI for Biological Intelligence @mpiforbi.bsky.social · 24/04/2026
We are co-organising the 10th European Vision & Cognition (EVC) Meeting! Bringing together leading researchers and emerging talents working at the intersection of vision science, neuroscience, and cognition. 📅 30 June and 03 July 📍 Palazzone di Cortona, Tuscany 👉 Register here: nin.nl/evc-meeting
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Eduardo Maristany de las Casas @maristanye.bsky.social · 08/05/2026
1/10 When the going gets tough, the dendrites get going. Here is a summary on our new paper just published in @science.org on flexible learning in frontal motor cortex. With @mattlark.bsky.social 🔬. #neuroskyence #neuroscience 🔗 doi.org/10.1126/scie...
doi.org
Tuft dendrites in frontal motor cortex enable flexible learning
Flexible learning relies on integrating sensory and contextual information to adjust behavioral output in different environments. The anterolateral motor cortex (ALM) is a frontal area critical for ac...
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Georg Keller @georgkeller.bsky.social · 15/04/2026
For nearly a century, we believed the therapeutic effect of ECT is the seizure. Our latest research suggests we may have been looking at the wrong event. A thread on why cortical spreading depression (CSD) might be the driver of therapeutic benefit. Work led by @therehugolad.bsky.social
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Georg Keller @georgkeller.bsky.social · 31/03/2026
Very excited to share new work by Leonardo Lupori. In mice, a single dose of the antipsychotic clozapine results in changes to behavior and cortical activity patterns that remain detectable a week later. www.biorxiv.org/content/10.6...
biorxiv.org
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Rebecca Jordan @beckyjordan.bsky.social · 05/03/2026
First preprint from the lab! Using intracellular recordings & analysis of 2-photon imaging data, we show that spiking & neuromodulatory input during experience drive a reorganization of visuomotor inputs in V1 layer 2/3 neurons, consistent with enhanced visuomotor cancellation - bioRxiv link below.
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Georg Keller @georgkeller.bsky.social · 30/01/2026
We think cortex might function like a JEPA. It looks like prediction errors in layer 2/3 are not computed against input (as is the idea in predictive processing), but against a representation in latent space (i.e. like in a JEPA arxiv.org/abs/2301.08243 or RPL doi.org/10.1101/2025...).
arxiv.org
Self-Supervised Learning from Images with a Joint-Embedding Predictive Architecture
This paper demonstrates an approach for learning highly semantic image representations without relying on hand-crafted data-augmentations. We introduce the Image-based Joint-Embedding Predictive Archi...
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Anna Vasilevskaya @loghyr.bsky.social · 30/01/2026
Our work with @georgkeller.bsky.social on testing predictive processing (PP) models in cortex is out on biorvix now! www.biorxiv.org/content/10.6... A short thread on our findings and thoughts on where we should move on from PP below.
biorxiv.org
A functional influence based circuit motif that constrains the set of plausible algorithms of cortical function
There are several plausible algorithms for cortical function that are specific enough to make testable predictions of the interactions between functionally identified cell types. Many of these algorithms are based on some variant of predictive processing. Here we set out to experimentally distinguish between two such predictive processing variants. A central point of variability between them lies in the proposed vertical communication between layer 2/3 and layer 5, which stems from the diverging assumptions about the computational role of layer 5. One assumes a hierarchically organized architecture and proposes that, within a given node of the network, layer 5 conveys unexplained bottom-up input to prediction error neurons of layer 2/3. The other proposes a non-hierarchical architecture in which internal representation neurons of layer 5 provide predictions for the local prediction error neurons of layer 2/3. We show that the functional influence of layer 2/3 cell types on layer 5 is incompatible with the hierarchical variant, while the functional influence of layer 5 cell types on prediction error neurons of layer 2/3 is incompatible with the non-hierarchical variant. Given these data, we can constrain the space of plausible algorithms of cortical function. We propose a model for cortical function based on a combination of a joint embedding predictive architecture (JEPA) and predictive processing that makes experimentally testable predictions. ### Competing Interest Statement The authors have declared no competing interest. Swiss National Science Foundation, https://ror.org/00yjd3n13 Novartis Foundation, https://ror.org/04f9t1x17 European Research Council, https://ror.org/0472cxd90, 865617
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allen institute @alleninstitute.org · 28/01/2026
You have less than 3 days to apply for the #LakeConference on the Neurobiology of Mental Health in Lake Thun, Switzerland! 📆 May 17-21 in Thun, Switzerland 🏔️ All career stages welcomed ⏳ Apply by January 31 Learn more and apply: bit.ly/4pCHrAH 🧠📈
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Reposted by Anna Vasilevskaya
Portugues Lab @portugueslab.bsky.social · 02/01/2026
1/n: A new collaborative preprint from the lab to start the year: "A multi-ring shifter network computes head direction in zebrafish" together with Siyuan Mei, Martin Stemmler and Andreas Herz from the LMU, Munich.
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Friedemann Zenke @fzenke.bsky.social · 27/11/2025
1/6 New preprint 🚀 How does the cortex learn to represent things and how they move without reconstructing sensory stimuli? We developed a circuit-centric recurrent predictive learning (RPL) model based on JEPAs. 🔗 doi.org/10.1101/2025... Led by @atenagm.bsky.social @mshalvagal.bsky.social
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Georg Keller @georgkeller.bsky.social · 26/11/2025
One of the most promising approaches to making headway in understanding the cortical algorithm that I have seen in a long time! www.biorxiv.org/content/10.1...
biorxiv.org
Understanding cortical computation through the lens of joint-embedding predictive architectures
Tracking prey or recognizing a lurking predator is as crucial for survival as anticipating their actions. To guide behavior, the brain must extract information about object identities and their dynami...
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Reposted by Anna Vasilevskaya
Lake Conferences @lakeconferences.bsky.social · 13/10/2025
Join us for the second Neurobiology of Mental Health conference (May 2026) that will explore the biological mechanisms underlying mental health challenges and their treatment. Information and application on: lakeconferences.org. The deadline for applications is January 31st, 2026.
lakeconferences.org
Home - Lake Conferences
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Reposted by Anna Vasilevskaya
Alex @alexattinger.bsky.social · 24/10/2025
How does the brain balance learning new things without overwriting what it already knows? Our new paper tackles this long-standing stability–plasticity dilemma during active navigation. With Tony Drinnenberg from the Deisseroth Lab (@deisseroth.bsky.social) doi.org/10.1101/2025...
doi.org
Environmental Novelty Modulates Rapid Cortical Plasticity During Navigation
In novel environments, animals quickly learn to navigate, and position-correlated spatial representations rapidly emerge in both the retrosplenial cortex (RSC) and primary visual cortex (V1). However,...
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Reposted by Anna Vasilevskaya
Kris Jensen @kristorpjensen.bsky.social · 24/09/2025
I’m super excited to finally put my recent work with @behrenstimb.bsky.social on bioRxiv, where we develop a new mechanistic theory of how PFC structures adaptive behaviour using attractor dynamics in space and time! www.biorxiv.org/content/10.1...
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FMI science @fmiscience.bsky.social · 17/09/2025
This year's Ruth Chiquet Prize goes to @solygamagda.bsky.social, who sent a video message, for her work on how the brain detects sensory mismatches. Read more at: www.fmi.ch/news-events/...
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Reposted by Anna Vasilevskaya
Magdalena Solyga @solygamagda.bsky.social · 19/08/2025
A new preprint from our lab with @zelechowski.bsky.social & @georgkeller.bsky.social ! Using wireless EEG + VR, we recorded visuomotor mismatch responses in freely moving humans. Huge thanks to all participants, Keller Lab members and FMI facilities! Read more: www.biorxiv.org/content/10.1...
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Reposted by Anna Vasilevskaya
Flor Iacaruso @flor-iacaruso.bsky.social · 01/08/2025
1/N What are the organizational principles underlying crossmodal cortical connections? We address this in this new preprint, led by @alexegeaweiss.bsky.social & ‪@bturner-bridger.bsky.social‬ in collab w/ ‪@petrznam.bsky.social‬ @crick.ac.uk www.biorxiv.org/content/10.1...
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eLife @elife.bsky.social · 21/07/2025
Ditching months-long delays for fast, constructive feedback. This interview with @solygamagda.bsky.social dives into the experience of publishing with eLife and what it could mean for a more open and efficient future in science.
buff.ly
Publishing with eLife: “the future of science lies in greater transparency”
Neuroscientist Magdalena Solyga shares her latest study and her experience publishing with eLife.
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Victor Tatarskiy @greenrat.bsky.social · 20/07/2025
100%, but also - the eLife experiment is a good reminer that we need experiments here. Open reviews were not a thing until they were, peer reviews were not a thing until they were, so did preprints, and the ability not to respond to reviewers comments etc. We can try to re-imagine publishing!
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Tim Behrens @behrenstimb.bsky.social · 05/07/2025
Let's say you have a journal that isn't worried about protecting an impact factor, so it didn't need to package a million results into a single paper (to maximise citation-to-publication ratio). What would you do? Couple of suggestions below. Others very much appreciated!
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Alex Kwan @alexkwan.bsky.social · 24/06/2025
SCN2A is a top risk gene for autism. But how does losing one copy of it affect dendritic function during flexible decision-making? 🧬🐭🧠🧪 Our study in preprint @biorxivpreprint: www.biorxiv.org/content/10.1... Supported by a @simonsfoundation.org SFARI Pilot Award 🙌 #SCN2A #cureSCN2A
Title page of preprint
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Julian Rossbroich @jrbch.bsky.social · 27/05/2025
I've spent much of my PhD thinking about E/I balance, and our latest preprint represents the culmination of that journey. Huge thanks to @fzenke.bsky.social for guiding me. Looking forward to your thoughts & comments.
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Antonio Falasconi @antofala.bsky.social · 28/05/2025
Forelimb movement control at the basal ganglia - brainstem interface! Happy to finally share this work from me and @harsh-kanodia.bsky.social with Silvia Arber! @biozentrum.unibas.ch @fmiscience.bsky.social www.nature.com/articles/s41...
nature.com
Dynamic basal ganglia output signals license and suppress forelimb movements - Nature
Basal ganglia output neurons fire dynamically in bidirectional and movement-specific patterns to license forelimb movements. 
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Reposted by Anna Vasilevskaya
Markus Meister @mameister4.bsky.social · 21/05/2025
If you're planning a course with mathematical methods content, or use such methods in your own work, please take a look at "Mathematics in Biology", by Meister, Lee, and Portugues, published at MIT Press. 1/2 @portugueslab.bsky.social mitpress.mit.edu/978026204940...
mitpress.mit.edu
Mathematics in Biology
Biology has turned into a quantitative science. The core problems in the life sciences today involve complex systems that require mathematical expression, ye...
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Magdalena Solyga @solygamagda.bsky.social · 08/05/2025
A few words on our latest paper and where we're heading next ⬇️
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Jérôme Lecoq @jeromelecoq.bsky.social · 15/04/2025
How does our brain predict the future? Our review of predictive processing + research program is now on arXiv arxiv.org/abs/2504.09614 50+ neuroscientists distributed across the world worked together to create this unique community project.
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Portugues Lab @portugueslab.bsky.social · 02/04/2025
3/3 We are looking for a lab technician, a lab manager and researchers to join us in this new chapter. Read the post here: portugueslab.com/the-lab-is-h... Reach out to us if you are interested.
portugueslab.com
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Georg Keller @georgkeller.bsky.social · 13/03/2025
Consistent with the work of @jeremiahycohen.bsky.social and @mishaahrens.bsky.social labs, we find that serotonin axons in mouse visual cortex appear to signal recent visuomotor uncertainty (and unlike norepinephrine axons, they have no visuomotor mismatch responses) www.biorxiv.org/content/10.1...
biorxiv.org
Activity in serotonergic axons in visuomotor areas of cortex is modulated by the recent history of visuomotor coupling
Visuomotor experience is necessary for the development of normal function of visual cortex (Attinger et al., 2017) and likely establishes a balance between movement-related predictions and sensory sig...
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eLife @elife.bsky.social · 05/03/2025
🎉 It’s been over two years since we launched the eLife Model for publishing that places the focus on nuanced public assessments instead of publishing outcomes. 1/ Here’s how it’s going: buff.ly/wnJrXie
headline figures for E life's model
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Tim Behrens @behrenstimb.bsky.social · 16/02/2025
If only we had a system like @elife.bsky.social where peer review was public and accountable, we wouldn’t have to “rely” on peer review to “validate” papers!
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Blake Richards @tyrellturing.bsky.social · 20/11/2024
Paper in eLife from Solyga & Keller on responses in auditory cortex to multi-modal mismatches: elifesciences.org/reviewed-pre... 🧠📈 🧪
elifesciences.org
Multimodal mismatch responses in mouse auditory cortex
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Lake Conferences @lakeconferences.bsky.social · 22/11/2024
Join us for the Sensation and Action conference 2025 – application is now open: lakeconferences.org
lakeconferences.org
Home - Lake Conferences
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Markus Meister @mameister4.bsky.social · 21/08/2024
Why is reality so slow? Why can we only have one thought at a time? Why do we need so many neurons? Will Elon Musk's Neuralink really speed up his cognition? For answers and more questions check out our new review: "The Unbearable Slowness of Being". arxiv.org/abs/2408.10234
arxiv.org
The Unbearable Slowness of Being
This article is about the neural conundrum behind the slowness of human behavior. The information throughput of a human being is about 10 bits/s. In comparison, our sensory systems gather data at...
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