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Kimberly Kline 🏔

@kimingeneva.bsky.social
2.2K followers 587 following 86 posts

Professor, University of Geneva. We study Enterococcal biofilms, pathogenesis, and AMR. Formerly @KimInSingapore 🌴. kimberlyklinelab.com

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Reposted by Kimberly Kline 🏔
Gc Rox @gcrox.bsky.social · 12/09/2026
Postdoctoral position studying Neisseria gonorrhoeae genetics, genomics, physiology, or pathogenesis. Please email h-seifert@northwestern.edu or apply at careers.northwestern.edu/psp/hrnu_er/... Please Repost
careers.northwestern.edu
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Kimberly Kline 🏔 @kimingeneva.bsky.social · 21/08/2026
Novelty, diversity, and genetic dark matter in enterococci of invertebrates | mBio journals.asm.org/doi/10.1128/...
journals.asm.org
Novelty, diversity, and genetic dark matter in enterococci of invertebrates | mBio
Enterococci are auxotrophic gut-associated bacteria that co-evolved with their terrestrial hosts over many eons. In the last 75 years—the “antibiotic era”—E. faecalis and E. faecium gained genes for a...
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Kimberly Kline 🏔 @kimingeneva.bsky.social · 09/07/2026
🚨Join us at the University of Geneva! We're seeking an outstanding junior researcher to apply for an ERC or SNSF Starting Grant with our institutional support in host–pathogen interactions, bacteriology, virology, parasitology, or mycology. www.unige.ch/medecine/mim... Please share!
unige.ch
Open call : MIMOL Junior Group Leader’s application for a Starting Grant - Microbiology and molecular medicine - UNIGE
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Zeynep Baharoglu @zeynepbaharoglu.bsky.social · 04/07/2026
☀️🔥 New RNA-modification newsletter, heat-wave edition: wobble mods, QueC evolution, tRNA thiolation, host signals rewiring virulence translation, bacterial mRNA fate, and a bonus chapter on ribosome heterogeneity, hibernation & dormancy. 🦠 Stay cool, modify your RNAs.
rnamodifupdates.substack.com
☀️🔥🏜️ RNA Modifications Newsletter - June-July 2026
Issue #12
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Guillaume Thibault @gthibault.bsky.social · 21/06/2026
NTU's School of Biological Sciences is hiring faculty, Assistant Professor to Full Professor. The environment is collaborative and the start-up funding is genuinely generous. Four research areas. Campus visits 28 Sep to 2 Oct 2026. Apply here www.ntu.edu.sg/sbs/about-us...
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Kimberly Kline 🏔 @kimingeneva.bsky.social · 19/06/2026
We've been learning a lot about how Enterococcus faecalis interacts with neutrophils lately. In our latest preprint, @harisantypas.bsky.social describes how lactic acid from E. faecalis dampens neutrophil metabolism leading to NETosis and phagoytosis suppression. #microsky
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Joe Zackular @joeyzacks.bsky.social · 09/05/2026
Such a fantastic week at #KSBeyondAntibiotics26! Amazing science, timely conversations about AMR & bacterial infections, and AWESOME people. Thanks to my co-organizers and everyone who joined us in beautiful Breckenridge! @dariavantyne.bsky.social @maribyndloss.bsky.social @kimingeneva.bsky.social
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Microbes.Info @microbesinfo.bsky.social · 11/05/2026
👍
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Asaf Levy @asaflevylab.bsky.social · 26/04/2026
A nice story by Ami Bhatt's lab. A transposable element insertion upstream of a folate transporter formed a strong promoter, increasing transcription and improving relative fitness under folate limitation. We have recently reported that folate biosynthesis www.nature.com/articles/s41...
nature.com
Transposable elements are driving rapid adaptation of Enterococcus faecium - Nature
Over three decades, rapid expansion of the transposable element ISL3 has reshaped Enterococcus faecium, which helps to explain this pathogen’s growing clinical threat.
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Shu-Sin Chng @figlegend.bsky.social · 23/03/2026
Here is it! Super new science from us on horizontal gene transfer & bact defense systems! Liyana OW YONG discovered the first-of-its-kind defense factor AbjA that triggers 'abortive conjugation' as a defense mechanism, by targeting the T4SS! How neat?! #MicroSky 1/7 www.biorxiv.org/content/10.6...
biorxiv.org
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Willem van Schaik @wvschaik.bsky.social · 18/03/2026
Important study by Chris Connor and Ben Howden (both not on here?) @unimelb.edu.au 'Global dissemination of optrA-mediated linezolid resistance in enterococci', major roles of mobile genetic elements in the dissemination of this important resistance determinant academic.oup.com/jac/article/...
academic.oup.com
Global dissemination of optrA-mediated linezolid resistance in enterococci
AbstractObjectives. Acquired resistance to last-line linezolid has emerged in Enterococcus spp. and can be conferred by the optrA gene. Here, we study the
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Daria Van Tyne @dariavantyne.bsky.social · 17/03/2026
Study 2: Culture-enriched metagenomic sequencing reveals within-patient diversity and transmission of vancomycin-resistant Enterococcus faecium www.medrxiv.org/content/10.6...
medrxiv.org
Culture-enriched metagenomic sequencing reveals within-patient diversity and transmission of vancomycin-resistant Enterococcus faecium
Colonization of the gastrointestinal (GI) tract by vancomycin-resistant Enterococcus faecium (VREfm) often precedes bloodstream infection and serves as a reservoir for onward patient transmission in h...
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bioRxiv Microbiology @biorxiv-microbiol.bsky.social · 11/03/2026
Vancomycin tolerance and dispersion of dual species biofilms of Clostridioides difficile and Vancomycin-resistant Enterococcus faecium www.biorxiv.org/content/10.64898/20…
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Kimberly Kline 🏔 @kimingeneva.bsky.social · 11/03/2026
Frederick's @frederickreinhart.bsky.social paper on E. faecalis egress from host cells following intracellular replication is now up at #PLOS Pathogens. 😎 Check it out! dx.plos.org/10.1371/jour...
dx.plos.org
Gelatinase regulates the egress of intracellular replicating populations during Enterococcus faecalis infection
Author summary Pathogenic bacteria are traditionally classified as either “intracellular” or “extracellular”, but growing evidence suggests that many extracellular bacteria also adopt transient intrac...
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Ákos T Kovács @evolvedbiofilm.bsky.social · 11/03/2026
Adaptation of Enterococcus faecalis to intestinal mucus revealed by a human colonic organoid model #mSystems from Alexandre Persat with @kimingeneva.bsky.social journals.asm.org/doi/10.1128/...
journals.asm.org
Adaptation of Enterococcus faecalis to intestinal mucus revealed by a human colonic organoid model | mSystems
Gut microbiota interactions with mucus during early intestinal colonization are critical for establishing stable communities and influencing host health. Using human colonic organoids combined with Tn-seq and live imaging, this study reveals how Enterococcus faecalis adapts to the mucosal surface by forming microcolonies and reprogramming its metabolism. This integrative approach provides a powerful platform to study other microbiota members in the native-like environment of the large intestine and evaluate potential therapeutic interventions.
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Keystone Symposia @keystonesymposia.bsky.social · 27/02/2026
⏰ Last chance to save $250! Register for Beyond Antibiotics by 11:59pm MST on March 5. Join @joeyzacks.bsky.social, @kimingeneva.bsky.social, @dariavantyne.bsky.social & @maribyndloss.bsky.social to spark new collaborations. 🎥 youtu.be/8Ppjx-MnvxA keysym.us/KSBeyondAnti... #KSBeyondAntibiotics26
youtu.be
KSQA: Drs. Joseph P. Zackular & Mariana X. Byndloss (Beyond Antibiotics)
YouTube video by KeystoneSymposia
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Kimberly Kline 🏔 @kimingeneva.bsky.social · 23/02/2026
What if quorum sensing doesn’t promote biofilms - but restrains it? 🤔 New work from @harisantypas.bsky.social shows that the Fsr QS system in Enterococcus faecalis acts as a brake on biofilm formation and pathogenesis during infective endocarditis (IE). www.nature.com/articles/s41...
nature.com
Loss of Fsr quorum sensing promotes biofilm formation and worsens outcomes in enterococcal infective endocarditis - Nature Communications
Infective endocarditis (IE) is an understudied biofilm-associated infection. Here, analyses of preclinical and clinical data reveal that the Fsr quorum sensing (QS) system of Enterococcus faecalis is ...
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Alex Merz 🇺🇸🇨🇦🇺🇦 @merz.bsky.social · 16/02/2026
🧵 After years out of the field, I and my lab are again working on bacterial type IV pili. We have just posted our first preprints, and I'm excited to share what we have discovered. This shows Neisseria gonorrheae bacteria infecting a human epithelical cell. Here, you can see the pili in red. 1/
Fluorescence micrograph. Emma Miller and Alex Merz, unpublished.
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ASM @asm.org · 13/02/2026
The American Academy of Microbiology proudly announces the election of 63 fellows to the Class of 2026. Over the past 50 years, the Academy has elected +2,700 distinguished scientists. This year, the new fellows hail from 14 countries. Read press release: asm.social/2OC
Congratulations Fellows!
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George O'Toole (he/him/his) @geiselbiofilm.bsky.social · 13/02/2026
New in JB: Weiss, Tamayo et al. describe a very cool microbial interaction wherein Enterococcus faecalis, an opportunist found in the inflamed gut, impacts phase-variation noted by chaining & rough colony morphology of C. diff. journals.asm.org/doi/10.1128/... @asm.org #JBacteriology
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Prof Jenny Rohn @jennyrohn.bsky.social · 13/02/2026
Abstract deadline Mon for 6th Clinical & Scientific Advances in UTI, the premier biennial gathering of our international community. Privileged to be co-organising this year. See you in Nashville! utiga.org/2026-6th-csa... #UTI #UTISky #IDSky #MicroSky @globaluti.bsky.social utiga.org/2026-6th-csa...
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Siegenthaler Lab @siegenthalerlab.bsky.social · 12/02/2026
Scientist's way of saying 'I ❤️ you' "I found this paper/preprint that made me think of your project." "I checked the mice/cells/plates already." "I just sent you the edits you requested." "I have a slide/diagram that will work for that." "I had that problem with [lab equipment], I have a fix."
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Ana Santos @ana-asantos.bsky.social · 28/01/2026
🎉 New paper out! Taking a closer look at Enterococcus thailandicus, a species long considered of low clinical relevance. doi.org/10.1016/j.nm...
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Kimberly Kline 🏔 @kimingeneva.bsky.social · 27/01/2026
Lactic acid lover? Check out @ronni.bsky.social 's new work in @cp-cellhostmicrobe.bsky.social showing how Enterococcus faecalis-derived LA suppresses macrophage activation, in turn promoting bacterial persistence and polymicrobial wound infection in vivo. www.sciencedirect.com/science/arti...
sciencedirect.com
Enterococcus faecalis-derived lactic acid suppresses macrophage activation to facilitate persistent and polymicrobial wound infections
Macrophage activation is essential for innate immunity and antimicrobial defense. We show that Enterococcus faecalis suppresses macrophage activation …
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Kimberly Kline 🏔 @kimingeneva.bsky.social · 21/01/2026
Strep/Enterococcal colleagues! Streptococcal Biology GRC/GRS are open for applications. Acceptances are underway and the meeting is on track to fill up. If you’re aiming for a short talk (lots of slots), registering early matters for full consideration. Share widely! www.grc.org/streptococca...
grc.org
2026 Streptococcal Biology Conference GRC
The 2026 Gordon Research Conference on Streptococcal Biology will be held in Lucca (Barga), Lucca Italy. Apply today to reserve your spot.
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Kimberly Kline 🏔 @kimingeneva.bsky.social · 17/01/2026
Enterococcus fans: Check out our latest on E. faecalis EET, advancing our understanding of both the fundamental physiology of this bug and new mechanisms of its virulence. This is the product of a thrilling collaboration with friends in Singapore @gthibault.bsky.social led by @aarontan.bsky.social.
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Keystone Symposia @keystonesymposia.bsky.social · 05/01/2026
⏰ Deadline Jan 7 (11:59 pm MST) to submit a short talk abstract or apply for a scholarship for the Keystone Symposium Beyond Antibiotics. Hear from @joeyzacks.bsky.social, @maribyndloss.bsky.social: youtu.be/8Ppjx-MnvxA keysym.us/KSBeyondAnti... @kimingeneva.bsky.social & @dariavantyne.bsky.social
youtu.be
KSQA: Drs. Joseph P. Zackular & Mariana X. Byndloss (Beyond Antibiotics)
YouTube video by KeystoneSymposia
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Willem van Schaik @wvschaik.bsky.social · 19/12/2025
'In 2021, 11,021 deaths and 353,634 DALYs were attributable to VREfm worldwide, (...) 2,991 deaths and 82,025 DALYs attributable to VREfs. (...) VREfm burden is projected to continue rising across all indicators by 2050, while VREfs shows a sustained decline.' www.sciencedirect.com/science/arti...
sciencedirect.com
Global burden, inequalities and projections of vancomycin-resistant Enterococcus faecium and Enterococcus faecalis, 1990–2050: a systematic global analysis
Vancomycin-resistant Enterococcus faecium (VREfm) and Enterococcus faecalis (VREfs) are major antimicrobial resistance threats. Previous assessments r…
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Kimberly Kline 🏔 @kimingeneva.bsky.social · 18/12/2025
🧵Enterococcus faecalis is not just an extracellular organism. 🧵 A growing body of work shows it can survive + REPLICATE inside host cells, and that intracellular life may seed persistence, dissemination, and reinfection. 1/n #MMBR @asm.org journals.asm.org/doi/10.1128/...
journals.asm.org
Enterococcus faecalis: an overlooked cell invader | Microbiology and Molecular Biology Reviews
SUMMARYEnterococcus faecalis and Enterococcus faecium are human pathobionts that exhibit a dual lifestyle as commensal and pathogenic bacteria. The pathogenic lifestyle is associated with specific conditions involving host susceptibility and intestinal ...
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Kimberly Kline 🏔 @kimingeneva.bsky.social · 16/12/2025
🤩 Long ago in 2021, Irina Afonina saw E. faecalis prophage tail fibers co-purify with membrane vesicles, but we didn't know their fxn: pmc.ncbi.nlm.nih.gov/articles/PMC.... In this new preprint, Mike Gilmore and colleagues show us what the tail fibers (aka efagins) actually do! Super cool work. 🤩
pmc.ncbi.nlm.nih.gov
The composition and function of Enterococcus faecalis membrane vesicles
Membrane vesicles (MVs) contribute to various biological processes in bacteria, including virulence factor delivery, antimicrobial resistance, host immune evasion and cross-species communication. MVs are frequently released from the surface of both ...
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Benoit Marteyn @marteynlab.bsky.social · 27/11/2025
Thrilled to share that neutrophils produce extra long fibrillar components named proteoglycofili or PGF. PGF are released by living neutrophils and do not contain DNA. They might look like NETs but are not NETs… www.cell.com/cell-reports...
cell.com
Proteoglycofili are glycosaminoglycan-containing fibrillar components released by neutrophils to neutralize bacteria
Alternative to the formation of NETs, André et al. describe here that viable neutrophils may release a fibrillar component named proteoglycofili or PGF upon stimulation. PGF formation is associated wi...
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Sara Mitri @saramitri.bsky.social · 02/12/2025
New preprint from our lab www.biorxiv.org/content/10.1...! Andrea Dos Santos and Clément Vulin combine experiments and models showing how adding glucose can strengthen negative interactions between microbial species. This can be used in tandem with antibiotic treatment to inhibit pathogens!
Diagram illustrating "feed the enemy's enemy": ampicillin inhibits Pseudomonas aeruginosa. Citrobacter freundii acidifies the environment, further inhibiting P. aeruginosa.
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Kimberly Kline 🏔 @kimingeneva.bsky.social · 24/11/2025
Excited to share our first look at Enterococcus faecium infection biology: diabetic wounds are complex, and E. faecium persists despite early immune responses. In diabetic mice, it shows impaired clearance + sustained neutrophil recruitment, worsening healing.
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bioRxiv Microbiology @biorxiv-microbiol.bsky.social · 20/11/2025
Metabolic cross-talk promotes persistence of Enterococcus in a model of polymicrobial catheter-associated urinary tract infection www.biorxiv.org/content/10.1101/202…
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Joe Zackular @joeyzacks.bsky.social · 19/11/2025
Registration is now open for @keystonesymposia.bsky.social "Beyond #Antibiotics: Emerging Strategies Combating #BacterialInfection." Deadline for scholarships and abstract selected short talks is Jan 7! Join us this May for an amazing meeting! keysym.us/KSBeyondAntibiotics26 #KSBeyondAntibiotics26
keysym.us
Beyond Antibiotics: Emerging Strategies for Combating Bacterial Infection | Keystone Symposia
Join us at the Keystone Symposia on Beyond Antibiotics: Emerging Strategies for Combating Bacterial Infection, May 2026, in Breckenridge, with field leaders!
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Cristina Colomer-Winter @colomer-winter.bsky.social · 18/11/2025
Enterococcus being one step ahead when it comes to stress… once again! Loved figuring this one out🤓 bsky.app/profile/kimi...
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Kimberly Kline 🏔 @kimingeneva.bsky.social · 17/11/2025
Why does daptomycin resistance appear so fast in Enterococcus? We finally have a clue. DAP resistance in enterococci pops up quickly. What’s been missing is why resistance-associated membrane changes look the way they do, and why the classic path of mutations is so predictable.
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bioRxiv Microbiology @biorxiv-microbiol.bsky.social · 12/11/2025
A conserved sRNA regulates mucin adhesion and gut colonization across the Enterococcaceae www.biorxiv.org/content/10.1101/202…
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Kimberly Kline 🏔 @kimingeneva.bsky.social · 04/11/2025
We're just 6 months away from @keystoneSymposia.bsky.social Beyond #Antibiotics : Emerging Strategies Combating #BacterialInfection, May 2026 in Breckenridge! 👉Scholarship and short talk abstract deadlines are Jan 7! 🧐 keysym.us/KSBeyondAntibiotics26 #KSBeyondAntibiotics26
keysym.us
Beyond Antibiotics: Emerging Strategies for Combating Bacterial Infection | Keystone Symposia
Join us at the Keystone Symposia on Beyond Antibiotics: Emerging Strategies for Combating Bacterial Infection, May 2026, in Breckenridge, with field leaders!
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Gc Rox @gcrox.bsky.social · 06/09/2025
Postdoc position (please re-post) A funded postdoctoral position, will open in 2026 to study aspects of Neisseria gonorrhoeae pathogenesis, antigenic variation, genetics, or physiology. If interested in more information, please contact Hank Seifert h-seifert@northwestern.edu #MicroSky
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Guillaume Thibault @gthibault.bsky.social · 27/08/2025
📣 Ready to lead your own lab? NTU Singapore's Nanyang Assistant Professorship offers a 100% paid salary & a S$2.75M start-up package. We're visiting the US this Sept to recruit top talent. Meet us in NYC, Boston & more! #FacultyJobs #TenureTrack Register HERE: lnkd.in/gSy5qpA7
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Kimberly Kline 🏔 @kimingeneva.bsky.social · 24/08/2025
💕 Such a joyful day celebrating the wedding of our longest-standing lab member Pei Yi (since 2012!) and former PhD student Kelvin. 💍 Their special day brought together generations of the Kline Lab family - a wonderful reminder of the friendships and community that science builds along the way. 💕
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Kimberly Kline 🏔 @kimingeneva.bsky.social · 11/08/2025
Our latest efforts to understand Enterococcal wound infection. In long-term collaboration with @gthibault.bsky.social, we discovered how E. faecalis makes extracellular ROS - via EET!⚡️Which in turn dysregulates host UPR to delay wound healing. Led by @aarontan.bsky.social - his videos below are 🤩!
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bioRxiv Microbiology @biorxiv-microbiol.bsky.social · 25/07/2025
Enterococcus faecalis modulates phase variation in Clostridioides difficile www.biorxiv.org/content/10.1101/202…
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Kimberly Kline 🏔 @kimingeneva.bsky.social · 16/07/2025
At my 1st @femsmicro.org congress (in Milan!) - it's a fantastic meeting. I co-chaired a superb session on Microbial Dark Matter with @jlewillett.bsky.social, who also kicked off the session with a talk on her lab's work. 🤩 We also heard from my FEMS Microbes co-EIC Kathleen Scott! 💪🏽 #FEMS2025
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ᐯIᑕTOᖇ ᑎIᘔET, ᗰᗪ @nizet.bsky.social · 11/07/2025
Vancomycin-resistant 𝙀𝙣𝙩𝙚𝙧𝙤𝙘𝙤𝙘𝙘𝙪𝙨 𝙛𝙖𝙚𝙘𝙞𝙪𝙢 (VRE) thrives in the antibiotic-perturbed gut VRE gobbles up enriched sugars and amino acids, and loss of short-chain fatty acids (acetate, propionate, butyrate) eliminates natural growth brakes Therapeutic angle: Prebiotic SCFA mixtures block VRE growth!
nature.com
Vancomycin-resistant enterococci utilise antibiotic-enriched nutrients for intestinal colonisation - Nature Communications
Here, the authors show that vancomycin-resistant enterococci grow in the antibiotic-treated gut microbiome by utilising enriched nutrients in the presence of reduced concentrations of inhibitory micro...
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Kimberly Kline 🏔 @kimingeneva.bsky.social · 03/07/2025
🔬Calling all microbiologists. 🔬 Ever feel like your paper is too small for some journals, but too solid to sit on? #FEMSMicrobes welcomes well-executed microbiology manuscripts, and they put special attention on promoting ECR authors, eg the webinar below. 👇 @femsjournals.bsky.social @femsmicro.org
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anna brogan @apbrogan.bsky.social · 17/06/2025
Very happy to share that a large part of my thesis work is out today: B. subtilis uses the second messenger c-di-AMP to modulate its turgor pressure in response to the state of its cell envelope. www.nature.com/articles/s41...
nature.com
Cyclic-di-AMP modulates cellular turgor in response to defects in bacterial cell wall synthesis - Nature Microbiology
Brogan et al. uncover a signalling pathway in which levels of the nucleotide second messenger c-di-AMP increase in response to defects in cell wall synthesis. This regulatory pathway decreases turgor ...
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FEMS @femsmicro.org · 14/06/2025
FEMS MICRO Milan is buzzing with excitement! 🎉🧫 Over 1,900 participants from 90+ countries are ready for 1,700+ posters & 100+ sessions (debates, expert panels, keynotes). This is Europe's premier microbiology event🏆🔬 Regular registration closes today, at 23:59 CEST: buff.ly/6f7yHDV
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Glen Dsouza @nonresidentdesi.bsky.social · 13/06/2025
Our paper in @science.org 👉🏽 www.science.org/doi/10.1126/... is accompanied by an especially thoughtful perspective by Carey Nadell and Chris Marx 👉🏽 www.science.org/doi/10.1126/...
science.org
Antagonism as a foraging strategy in microbial communities
In natural habitats, nutrient availability limits bacterial growth. We discovered that bacteria can overcome this limitation by acquiring nutrients by lysing neighboring cells through contact-dependen...
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