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Kimberly Kline 🏔

@kimingeneva.bsky.social
2.2K followers 587 following 86 posts

Professor, University of Geneva. We study Enterococcal biofilms, pathogenesis, and AMR. Formerly @KimInSingapore 🌴. kimberlyklinelab.com

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Reposted by Kimberly Kline 🏔
Gc Rox @gcrox.bsky.social · 12/09/2026
Postdoctoral position studying Neisseria gonorrhoeae genetics, genomics, physiology, or pathogenesis. Please email h-seifert@northwestern.edu or apply at careers.northwestern.edu/psp/hrnu_er/... Please Repost
careers.northwestern.edu
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Kimberly Kline 🏔 @kimingeneva.bsky.social · 21/08/2026
Novelty, diversity, and genetic dark matter in enterococci of invertebrates | mBio journals.asm.org/doi/10.1128/...
journals.asm.org
Novelty, diversity, and genetic dark matter in enterococci of invertebrates | mBio
Enterococci are auxotrophic gut-associated bacteria that co-evolved with their terrestrial hosts over many eons. In the last 75 years—the “antibiotic era”—E. faecalis and E. faecium gained genes for a...
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Kimberly Kline 🏔 @kimingeneva.bsky.social · 09/07/2026
@viollierpat.bsky.social @eckerleisabella.bsky.social
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Kimberly Kline 🏔 @kimingeneva.bsky.social · 09/07/2026
🚨Join us at the University of Geneva! We're seeking an outstanding junior researcher to apply for an ERC or SNSF Starting Grant with our institutional support in host–pathogen interactions, bacteriology, virology, parasitology, or mycology. www.unige.ch/medecine/mim... Please share!
unige.ch
Open call : MIMOL Junior Group Leader’s application for a Starting Grant - Microbiology and molecular medicine - UNIGE
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Zeynep Baharoglu @zeynepbaharoglu.bsky.social · 04/07/2026
☀️🔥 New RNA-modification newsletter, heat-wave edition: wobble mods, QueC evolution, tRNA thiolation, host signals rewiring virulence translation, bacterial mRNA fate, and a bonus chapter on ribosome heterogeneity, hibernation & dormancy. 🦠 Stay cool, modify your RNAs.
rnamodifupdates.substack.com
☀️🔥🏜️ RNA Modifications Newsletter - June-July 2026
Issue #12
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Guillaume Thibault @gthibault.bsky.social · 21/06/2026
NTU's School of Biological Sciences is hiring faculty, Assistant Professor to Full Professor. The environment is collaborative and the start-up funding is genuinely generous. Four research areas. Campus visits 28 Sep to 2 Oct 2026. Apply here www.ntu.edu.sg/sbs/about-us...
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Kimberly Kline 🏔 @kimingeneva.bsky.social · 19/06/2026
Together, this work shows E. faecalis to be a master manipulator of innate immunity, capable of actively reprogramming innate immune cell function. The consequence is enhanced persistence and augmented mono- and polymicrobial biofilm-associated infections. 🐁
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Kimberly Kline 🏔 @kimingeneva.bsky.social · 19/06/2026
It also explains an observation by Patrick Kao where E. faecalis suppresses S. aureus-induced NETosis. academic.oup.com/femsmicrobes.... And may speak to @claudiajades.bsky.social observation that E. faecalis turn neutrophils into llittle replication factories! journals.asm.org/doi/10.1128/....
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Kimberly Kline 🏔 @kimingeneva.bsky.social · 19/06/2026
This is a nice parallel to recent work from @ronni.bsky.social, showing how E. faecalis lactic acid suppresses macrophage activation. www.cell.com/cell-host-mi...
cell.com
Enterococcus faecalis-derived lactic acid suppresses macrophage activation to facilitate persistent and polymicrobial wound infections
da Silva et al. show that Enterococcus faecalis-derived lactic acid suppresses macrophage NF-κB activation via MCT-1 and GPR81 signaling. This lactic-acid-driven immunosuppression promotes bacterial p...
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Kimberly Kline 🏔 @kimingeneva.bsky.social · 19/06/2026
We've been learning a lot about how Enterococcus faecalis interacts with neutrophils lately. In our latest preprint, @harisantypas.bsky.social describes how lactic acid from E. faecalis dampens neutrophil metabolism leading to NETosis and phagoytosis suppression. #microsky
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Joe Zackular @joeyzacks.bsky.social · 09/05/2026
Such a fantastic week at #KSBeyondAntibiotics26! Amazing science, timely conversations about AMR & bacterial infections, and AWESOME people. Thanks to my co-organizers and everyone who joined us in beautiful Breckenridge! @dariavantyne.bsky.social @maribyndloss.bsky.social @kimingeneva.bsky.social
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Microbes.Info @microbesinfo.bsky.social · 11/05/2026
👍
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Asaf Levy @asaflevylab.bsky.social · 26/04/2026
A nice story by Ami Bhatt's lab. A transposable element insertion upstream of a folate transporter formed a strong promoter, increasing transcription and improving relative fitness under folate limitation. We have recently reported that folate biosynthesis www.nature.com/articles/s41...
nature.com
Transposable elements are driving rapid adaptation of Enterococcus faecium - Nature
Over three decades, rapid expansion of the transposable element ISL3 has reshaped Enterococcus faecium, which helps to explain this pathogen’s growing clinical threat.
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Shu-Sin Chng @figlegend.bsky.social · 23/03/2026
Here is it! Super new science from us on horizontal gene transfer & bact defense systems! Liyana OW YONG discovered the first-of-its-kind defense factor AbjA that triggers 'abortive conjugation' as a defense mechanism, by targeting the T4SS! How neat?! #MicroSky 1/7 www.biorxiv.org/content/10.6...
biorxiv.org
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Willem van Schaik @wvschaik.bsky.social · 18/03/2026
Important study by Chris Connor and Ben Howden (both not on here?) @unimelb.edu.au 'Global dissemination of optrA-mediated linezolid resistance in enterococci', major roles of mobile genetic elements in the dissemination of this important resistance determinant academic.oup.com/jac/article/...
academic.oup.com
Global dissemination of optrA-mediated linezolid resistance in enterococci
AbstractObjectives. Acquired resistance to last-line linezolid has emerged in Enterococcus spp. and can be conferred by the optrA gene. Here, we study the
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Reposted by Kimberly Kline 🏔
Daria Van Tyne @dariavantyne.bsky.social · 17/03/2026
Study 2: Culture-enriched metagenomic sequencing reveals within-patient diversity and transmission of vancomycin-resistant Enterococcus faecium www.medrxiv.org/content/10.6...
medrxiv.org
Culture-enriched metagenomic sequencing reveals within-patient diversity and transmission of vancomycin-resistant Enterococcus faecium
Colonization of the gastrointestinal (GI) tract by vancomycin-resistant Enterococcus faecium (VREfm) often precedes bloodstream infection and serves as a reservoir for onward patient transmission in h...
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Reposted by Kimberly Kline 🏔
bioRxiv Microbiology @biorxiv-microbiol.bsky.social · 11/03/2026
Vancomycin tolerance and dispersion of dual species biofilms of Clostridioides difficile and Vancomycin-resistant Enterococcus faecium www.biorxiv.org/content/10.64898/20…
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Kimberly Kline 🏔 @kimingeneva.bsky.social · 11/03/2026
Frederick's @frederickreinhart.bsky.social paper on E. faecalis egress from host cells following intracellular replication is now up at #PLOS Pathogens. 😎 Check it out! dx.plos.org/10.1371/jour...
dx.plos.org
Gelatinase regulates the egress of intracellular replicating populations during Enterococcus faecalis infection
Author summary Pathogenic bacteria are traditionally classified as either “intracellular” or “extracellular”, but growing evidence suggests that many extracellular bacteria also adopt transient intrac...
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Ákos T Kovács @evolvedbiofilm.bsky.social · 11/03/2026
Adaptation of Enterococcus faecalis to intestinal mucus revealed by a human colonic organoid model #mSystems from Alexandre Persat with @kimingeneva.bsky.social journals.asm.org/doi/10.1128/...
journals.asm.org
Adaptation of Enterococcus faecalis to intestinal mucus revealed by a human colonic organoid model | mSystems
Gut microbiota interactions with mucus during early intestinal colonization are critical for establishing stable communities and influencing host health. Using human colonic organoids combined with Tn-seq and live imaging, this study reveals how Enterococcus faecalis adapts to the mucosal surface by forming microcolonies and reprogramming its metabolism. This integrative approach provides a powerful platform to study other microbiota members in the native-like environment of the large intestine and evaluate potential therapeutic interventions.
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Keystone Symposia @keystonesymposia.bsky.social · 27/02/2026
⏰ Last chance to save $250! Register for Beyond Antibiotics by 11:59pm MST on March 5. Join @joeyzacks.bsky.social, @kimingeneva.bsky.social, @dariavantyne.bsky.social & @maribyndloss.bsky.social to spark new collaborations. 🎥 youtu.be/8Ppjx-MnvxA keysym.us/KSBeyondAnti... #KSBeyondAntibiotics26
youtu.be
KSQA: Drs. Joseph P. Zackular & Mariana X. Byndloss (Beyond Antibiotics)
YouTube video by KeystoneSymposia
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Kimberly Kline 🏔 @kimingeneva.bsky.social · 23/02/2026
Haris talks more about his work @scelse.bsky.social here: youtu.be/NmoJQSpmkF8
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Kimberly Kline 🏔 @kimingeneva.bsky.social · 23/02/2026
Naturally occurring QS chromosomal deletions have long been observed in E. faecalis clinical isolates - without a clear functional explanation. Now, in collaboration with the teams of @dariavantyne.bsky.social 🇺🇸 & Annelies Zinkernagel 🇨🇭, we link these deletions to increased IE disease severity. 💡
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Kimberly Kline 🏔 @kimingeneva.bsky.social · 23/02/2026
Haris found that blood flow suppresses Fsr early in infection and that QS activation occurs only after bacteria form flow-shielded microcolonies. Strikingly, absence of Fsr QS conferred unchecked biofilm growth and metabolic rewiring, driving antibiotic tolerance, and prolonged bacteremia. 🤯
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Kimberly Kline 🏔 @kimingeneva.bsky.social · 23/02/2026
What if quorum sensing doesn’t promote biofilms - but restrains it? 🤔 New work from @harisantypas.bsky.social shows that the Fsr QS system in Enterococcus faecalis acts as a brake on biofilm formation and pathogenesis during infective endocarditis (IE). www.nature.com/articles/s41...
nature.com
Loss of Fsr quorum sensing promotes biofilm formation and worsens outcomes in enterococcal infective endocarditis - Nature Communications
Infective endocarditis (IE) is an understudied biofilm-associated infection. Here, analyses of preclinical and clinical data reveal that the Fsr quorum sensing (QS) system of Enterococcus faecalis is ...
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Alex Merz 🇺🇸🇨🇦🇺🇦 @merz.bsky.social · 16/02/2026
🧵 After years out of the field, I and my lab are again working on bacterial type IV pili. We have just posted our first preprints, and I'm excited to share what we have discovered. This shows Neisseria gonorrheae bacteria infecting a human epithelical cell. Here, you can see the pili in red. 1/
Fluorescence micrograph. Emma Miller and Alex Merz, unpublished.
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ASM @asm.org · 13/02/2026
The American Academy of Microbiology proudly announces the election of 63 fellows to the Class of 2026. Over the past 50 years, the Academy has elected +2,700 distinguished scientists. This year, the new fellows hail from 14 countries. Read press release: asm.social/2OC
Congratulations Fellows!
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George O'Toole (he/him/his) @geiselbiofilm.bsky.social · 13/02/2026
New in JB: Weiss, Tamayo et al. describe a very cool microbial interaction wherein Enterococcus faecalis, an opportunist found in the inflamed gut, impacts phase-variation noted by chaining & rough colony morphology of C. diff. journals.asm.org/doi/10.1128/... @asm.org #JBacteriology
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Prof Jenny Rohn @jennyrohn.bsky.social · 13/02/2026
Abstract deadline Mon for 6th Clinical & Scientific Advances in UTI, the premier biennial gathering of our international community. Privileged to be co-organising this year. See you in Nashville! utiga.org/2026-6th-csa... #UTI #UTISky #IDSky #MicroSky @globaluti.bsky.social utiga.org/2026-6th-csa...
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Siegenthaler Lab @siegenthalerlab.bsky.social · 12/02/2026
Scientist's way of saying 'I ❤️ you' "I found this paper/preprint that made me think of your project." "I checked the mice/cells/plates already." "I just sent you the edits you requested." "I have a slide/diagram that will work for that." "I had that problem with [lab equipment], I have a fix."
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Ana Santos @ana-asantos.bsky.social · 28/01/2026
🎉 New paper out! Taking a closer look at Enterococcus thailandicus, a species long considered of low clinical relevance. doi.org/10.1016/j.nm...
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Kimberly Kline 🏔 @kimingeneva.bsky.social · 27/01/2026
Great 3 continent team effort including Brenda Tien, Patrick Kao, Jianzhu Chen and BlueSkyers @harisantypas.bsky.social @cenkcelik.bsky.social @gthibault.bsky.social @scelse.bsky.social
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Kimberly Kline 🏔 @kimingeneva.bsky.social · 27/01/2026
Lactic acid lover? Check out @ronni.bsky.social 's new work in @cp-cellhostmicrobe.bsky.social showing how Enterococcus faecalis-derived LA suppresses macrophage activation, in turn promoting bacterial persistence and polymicrobial wound infection in vivo. www.sciencedirect.com/science/arti...
sciencedirect.com
Enterococcus faecalis-derived lactic acid suppresses macrophage activation to facilitate persistent and polymicrobial wound infections
Macrophage activation is essential for innate immunity and antimicrobial defense. We show that Enterococcus faecalis suppresses macrophage activation …
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Kimberly Kline 🏔 @kimingeneva.bsky.social · 21/01/2026
Strep/Enterococcal colleagues! Streptococcal Biology GRC/GRS are open for applications. Acceptances are underway and the meeting is on track to fill up. If you’re aiming for a short talk (lots of slots), registering early matters for full consideration. Share widely! www.grc.org/streptococca...
grc.org
2026 Streptococcal Biology Conference GRC
The 2026 Gordon Research Conference on Streptococcal Biology will be held in Lucca (Barga), Lucca Italy. Apply today to reserve your spot.
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Kimberly Kline 🏔 @kimingeneva.bsky.social · 18/01/2026
I remember well this very cool study by @kayla-king.bsky.social et al. Thanks for highlighting the possible link to our work here!
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Kimberly Kline 🏔 @kimingeneva.bsky.social · 17/01/2026
Enterococcus fans: Check out our latest on E. faecalis EET, advancing our understanding of both the fundamental physiology of this bug and new mechanisms of its virulence. This is the product of a thrilling collaboration with friends in Singapore @gthibault.bsky.social led by @aarontan.bsky.social.
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Keystone Symposia @keystonesymposia.bsky.social · 05/01/2026
⏰ Deadline Jan 7 (11:59 pm MST) to submit a short talk abstract or apply for a scholarship for the Keystone Symposium Beyond Antibiotics. Hear from @joeyzacks.bsky.social, @maribyndloss.bsky.social: youtu.be/8Ppjx-MnvxA keysym.us/KSBeyondAnti... @kimingeneva.bsky.social & @dariavantyne.bsky.social
youtu.be
KSQA: Drs. Joseph P. Zackular & Mariana X. Byndloss (Beyond Antibiotics)
YouTube video by KeystoneSymposia
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Willem van Schaik @wvschaik.bsky.social · 19/12/2025
'In 2021, 11,021 deaths and 353,634 DALYs were attributable to VREfm worldwide, (...) 2,991 deaths and 82,025 DALYs attributable to VREfs. (...) VREfm burden is projected to continue rising across all indicators by 2050, while VREfs shows a sustained decline.' www.sciencedirect.com/science/arti...
sciencedirect.com
Global burden, inequalities and projections of vancomycin-resistant Enterococcus faecium and Enterococcus faecalis, 1990–2050: a systematic global analysis
Vancomycin-resistant Enterococcus faecium (VREfm) and Enterococcus faecalis (VREfs) are major antimicrobial resistance threats. Previous assessments r…
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Kimberly Kline 🏔 @kimingeneva.bsky.social · 18/12/2025
What’s next? Big questions we're excited about: • How does Ef hijack intracellular trafficking machinery for its replication? • What host pathways define “permissive” vs “restrictive” intracellular states? • How does intracellular replication impact chronicity/relapse in vivo? Stay tuned...🧐 6/6
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Kimberly Kline 🏔 @kimingeneva.bsky.social · 18/12/2025
There's more! @frederickreinhart.bsky.social now shows Fsr quorum sensing turns on during intracellular replication, driving GelE-dependent host cell lysis/egress, a model for how intracellular “factories” become new extracellular inocula, primed for reinfection. 5/n www.biorxiv.org/content/10.6...
biorxiv.org
Gelatinase regulates the egress of intracellular replicating populations during Enterococcus faecalis infection
Enterococcus faecalis is a common opportunistic pathogen, frequently isolated from chronic wounds, yet the mechanisms underlying its virulence and persistence in this niche remain incompletely underst...
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Kimberly Kline 🏔 @kimingeneva.bsky.social · 18/12/2025
Now, @claudiajades.bsky.social shows that E. faecalis replicates robustly in primary mouse AND human neutrophils - cells we typically think of as executioners, not incubators. 4/n #IAI @asm.org journals.asm.org/doi/10.1128/...
journals.asm.org
Enterococcus faecalis persists and replicates intracellularly within neutrophils | Infection and Immunity
Chronic wound infection represents a major global public health concern, impacting both healthcare costs and patient quality of life (1, 2). Enterococcus faecalis is a Gram-positive opportunistic pathogen associated with infections in a range of contexts, including urinary tract infection, endocarditis, neonatal sepsis, and chronic wound infection (3–7). A facultative anaerobic bacterium and commensal of the human gastrointestinal tract, E. faecalis exhibits both intrinsic and acquired antibiotic resistance (8), making these infections inherently and increasingly difficult to treat. Long considered an extracellular pathogen, E. faecalis aggregates and forms biofilms, enhancing its persistence capacity in chronic infections (9). However, increasing evidence across a range of host cell types points to an intracellular niche and lifestyle of this multifaceted persistent bacterium (10–13).
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Kimberly Kline 🏔 @kimingeneva.bsky.social · 18/12/2025
In parallel, the team of Pascale Serror and Cristel Archambaud showed E. faecalis can also survive/divide in hepatocytes, forming intracellular clusters (and supporting the “intracellular niche” concept beyond classic phagocytes). 3/n www.tandfonline.com/doi/10.1080/...
tandfonline.com
The unforeseen intracellular lifestyle of Enterococcus faecalis in hepatocytes
Enterococcus faecalis is a bacterial species present at a subdominant level in the human gut microbiota. This commensal turns into an opportunistic pathogen under specific conditions involving dysb...
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Kimberly Kline 🏔 @kimingeneva.bsky.social · 18/12/2025
First, work from @ronni.bsky.social in our group showed E. faecalis can replicate inside macrophages + epithelial cells, and that the intracellularly “trained” population is primed for more efficient reinfection. 2/n #PLOSPathogens @plos.org dx.plos.org/10.1371/jour...
dx.plos.org
Enterococcus faecalis alters endo-lysosomal trafficking to replicate and persist within mammalian cells
Author summary Enterococcus faecalis is often isolated from chronic wounds. Prior to this study, E. faecalis has been observed within different cell types, suggesting that it can successfully colonize...
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Kimberly Kline 🏔 @kimingeneva.bsky.social · 18/12/2025
🧵Enterococcus faecalis is not just an extracellular organism. 🧵 A growing body of work shows it can survive + REPLICATE inside host cells, and that intracellular life may seed persistence, dissemination, and reinfection. 1/n #MMBR @asm.org journals.asm.org/doi/10.1128/...
journals.asm.org
Enterococcus faecalis: an overlooked cell invader | Microbiology and Molecular Biology Reviews
SUMMARYEnterococcus faecalis and Enterococcus faecium are human pathobionts that exhibit a dual lifestyle as commensal and pathogenic bacteria. The pathogenic lifestyle is associated with specific conditions involving host susceptibility and intestinal ...
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Kimberly Kline 🏔 @kimingeneva.bsky.social · 16/12/2025
🤩 Long ago in 2021, Irina Afonina saw E. faecalis prophage tail fibers co-purify with membrane vesicles, but we didn't know their fxn: pmc.ncbi.nlm.nih.gov/articles/PMC.... In this new preprint, Mike Gilmore and colleagues show us what the tail fibers (aka efagins) actually do! Super cool work. 🤩
pmc.ncbi.nlm.nih.gov
The composition and function of Enterococcus faecalis membrane vesicles
Membrane vesicles (MVs) contribute to various biological processes in bacteria, including virulence factor delivery, antimicrobial resistance, host immune evasion and cross-species communication. MVs are frequently released from the surface of both ...
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Benoit Marteyn @marteynlab.bsky.social · 27/11/2025
Thrilled to share that neutrophils produce extra long fibrillar components named proteoglycofili or PGF. PGF are released by living neutrophils and do not contain DNA. They might look like NETs but are not NETs… www.cell.com/cell-reports...
cell.com
Proteoglycofili are glycosaminoglycan-containing fibrillar components released by neutrophils to neutralize bacteria
Alternative to the formation of NETs, André et al. describe here that viable neutrophils may release a fibrillar component named proteoglycofili or PGF upon stimulation. PGF formation is associated wi...
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Sara Mitri @saramitri.bsky.social · 02/12/2025
New preprint from our lab www.biorxiv.org/content/10.1...! Andrea Dos Santos and Clément Vulin combine experiments and models showing how adding glucose can strengthen negative interactions between microbial species. This can be used in tandem with antibiotic treatment to inhibit pathogens!
Diagram illustrating "feed the enemy's enemy": ampicillin inhibits Pseudomonas aeruginosa. Citrobacter freundii acidifies the environment, further inhibiting P. aeruginosa.
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Kimberly Kline 🏔 @kimingeneva.bsky.social · 24/11/2025
Excited to share our first look at Enterococcus faecium infection biology: diabetic wounds are complex, and E. faecium persists despite early immune responses. In diabetic mice, it shows impaired clearance + sustained neutrophil recruitment, worsening healing.
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bioRxiv Microbiology @biorxiv-microbiol.bsky.social · 20/11/2025
Metabolic cross-talk promotes persistence of Enterococcus in a model of polymicrobial catheter-associated urinary tract infection www.biorxiv.org/content/10.1101/202…
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Joe Zackular @joeyzacks.bsky.social · 19/11/2025
Registration is now open for @keystonesymposia.bsky.social "Beyond #Antibiotics: Emerging Strategies Combating #BacterialInfection." Deadline for scholarships and abstract selected short talks is Jan 7! Join us this May for an amazing meeting! keysym.us/KSBeyondAntibiotics26 #KSBeyondAntibiotics26
keysym.us
Beyond Antibiotics: Emerging Strategies for Combating Bacterial Infection | Keystone Symposia
Join us at the Keystone Symposia on Beyond Antibiotics: Emerging Strategies for Combating Bacterial Infection, May 2026, in Breckenridge, with field leaders!
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Cristina Colomer-Winter @colomer-winter.bsky.social · 18/11/2025
Enterococcus being one step ahead when it comes to stress… once again! Loved figuring this one out🤓 bsky.app/profile/kimi...
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