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Kari Hoffman

@karihoffman.bsky.social
2.5K followers 215 following 143 posts

neuroscientist @vanderbilt studying neural circuit+population rules for creating and deploying knowledge. computational neuroethology.

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Kari Hoffman @karihoffman.bsky.social · 04/10/2026
Because the gray material isn’t *immaterial*
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Kari Hoffman @karihoffman.bsky.social · 04/10/2026
👀 finishing up a proposal on the first 4. Let’s hope the reviewers agree with you. 🤞
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Kari Hoffman @karihoffman.bsky.social · 08/09/2026
📣Say it louder for the labs in the back.
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The vOICe vision BCI 🧠🇪🇺 @seeingwithsound.bsky.social · 29/08/2026
United States: Amid funding uncertainty, neuroscientists report a mix of cynicism, persistence www.thetransmitter.org/funding/amid... by @emilysingerneuro.bsky.social with @nicolecrust.bsky.social @sharenarice.bsky.social
thetransmitter.org
Amid funding uncertainty, neuroscientists report a mix of cynicism, persistence
Two years into one of the most tumultuous tenures in U.S. federal funding, researchers outline how they are coping with ongoing changes and reflect on the impact these changes are having on the system...
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Kari Hoffman @karihoffman.bsky.social · 20/08/2026
🔄 Uno reverse alert, PFC-HPC folks! This throws a spanner in the works of the simple “reuniens as relay” to hippocampus! 🏅Well crafted study. (Shoutout to my student @noahwillhite.bsky.social for tipping me off to it)
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Cory Inman @brainscout.bsky.social · 14/08/2026
Excited to share our lab's recent paper showing that direct electrical stimulation of the human amygdala enhances recognition memory for objects but not scenes. The article is open-access, and we'd love to hear your thoughts! Please share! TY to everyone involved! www.nature.com/articles/s42...
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Kari Hoffman @karihoffman.bsky.social · 14/08/2026
And, I’d like a closer inspection of “how are memories stable”…to consider whether they are. Maybe “the tension between stability and flexibility of memories”
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Kari Hoffman @karihoffman.bsky.social · 14/08/2026
As for product, considering biology more broadly, allostasis (calibrated dynamics) and metabolism, as contenders for “goals”
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Kari Hoffman @karihoffman.bsky.social · 14/08/2026
Yeah - they can/should be separated into process and product, was just compressing b/c we keep them together atm. Taking BTSP as example alternate process, I wonder what others we may be missing, possibly at a higher-order scale, drawing from cell heterogeneity.
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Kari Hoffman @karihoffman.bsky.social · 14/08/2026
🙌 ❤️🔥Yes to all the things. The 1st and 4th points may be related. Less about minimizing a reward error term and more about maximizing efficiency, allostasis.
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Ben Hayden @benhayden.bsky.social · 13/08/2026
New paper from the BCM Neurosurgery research team! "Neural basis of compositional control" led by @assiachericoni.bsky.social and @justfineneuro.bsky.social ! 🧵 www.nature.com/articles/s41...
nature.com
Neural basis of compositional control - Nature
Behaviour of human participants in a prey-pursuit task reflects dynamic blending of goal-specific control policies, with hippocampus estimating latent states, anterior cingulate cortex orchestrating p...
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Kari Hoffman @karihoffman.bsky.social · 14/08/2026
There is nothing either good or bad, but joking makes it so - Bob untucks humor #bb28
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Kari Hoffman @karihoffman.bsky.social · 10/08/2026
Can’t overstate this:
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Matteo Carandini @carandinilab.net · 31/07/2026
The apical dendrite looks great, and does wonders in a slice. What does it do in the living cortex? It depends on the cell. A causal spatial role for apical dendrites in the cortex www.biorxiv.org/content/10.6... by @anyiliu.bsky.social with @kenneth-harris.bsky.social and @fedrossi.bsky.social
A cartoon providing a graphical summary of the paper. It is divided in 3 rows.

The top row shows a pyramidal cell and its apical tuft, and shows the two experiments that we ran: optical dendritic pruning (chopping off the apical tuft), and synaptic imaging done in the same neurons where we do somatic imaging. 

The middle row shows the results pertaining to neurons that prefer large stimuli (this is visual cortex): pruning reduced their responses, and the receptive fields of apical synapses are far away from the that of the soma. 

The bottom row shows the results pertaining to neurons that prefer small stimuli: pruning seemed to do nothing to the responses, and the receptive field of apical synapses are right around that of the soma.
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Kari Hoffman @karihoffman.bsky.social · 31/07/2026
G-wiz
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Mark Histed @markhisted.org · 31/07/2026
Also, science needs to care about journalism too! The collapse of the US journalism industry (which is related to conspiracies and fractionation but not the only cause) is also a reason we are here.
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Kari Hoffman @karihoffman.bsky.social · 31/07/2026
Thanks, yes, I’d love to know what structure old memories impose. In particular, whether old -> new structural similarity between memoranda matters to scaffolding (compositionality) and how scaffolding differs and (dynamically?) aligns across brain areas. So much to do!
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Kari Hoffman @karihoffman.bsky.social · 31/07/2026
🙏❤️
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Kari Hoffman @karihoffman.bsky.social · 30/07/2026
Thanks so much, Vinny!
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Kari Hoffman @karihoffman.bsky.social · 30/07/2026
Thanks, Jan!
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Kari Hoffman @karihoffman.bsky.social · 30/07/2026
🙏 Thanks, Nora!
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Kari Hoffman @karihoffman.bsky.social · 30/07/2026
This took tenacious effort from @sabbaspoor.bsky.social, and props to @aymanaljishi.bsky.social who assisted and carries the torch. Thanks to the #BRAINinitiative, #NINDS, and Whitehall Foundation for essential funding & Diagnostic Biochips, Cambridge Neurotech and Neuralynx...& the reviewers! fine
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Kari Hoffman @karihoffman.bsky.social · 30/07/2026
Our findings suggest that memory consolidation could do more than stabilize isolated traces (or 'engrams'). Experience progressively links, reorganizes, and integrates neural assemblies allowing the primate brain to learn new information while preserving established memories. 11/n
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Kari Hoffman @karihoffman.bsky.social · 30/07/2026
schematic cross section through radial axis of CA1, showing superficial and deep layers of CA1 pyramidal cells. Sup/Deep cells begin as segregated assemblies (when NEW), but integrate more (as OLD), shown as cofiring distributions.
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Kari Hoffman @karihoffman.bsky.social · 30/07/2026
Because we had laminar cell resolution, we could explore CA1 microstructure doi.org/10.1016/j.ce.... Superficial pyramidal cells contributed more strongly to new assemblies and predicted greater future drift. As memories aged, superficial + deep CA1 neurons became increasingly coordinated. 10/n
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Kari Hoffman @karihoffman.bsky.social · 30/07/2026
To more directly test this idea, we measured the local cohesiveness of assembly members. Cohesiveness increased with memory age: new < recent < old, suggesting that experience progressively embeds assemblies within more interconnected and potentially more stable networks. 9/n
graph connectedness of assembly members increased from new to recent to old
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Kari Hoffman @karihoffman.bsky.social · 30/07/2026
“Drifting assemblies” = gradual change in activation strength during the task, was greater for New assemblies. Was this drift due to member cells "competing" across fellow assemblies? No! The more exclusive an assembly's members, the greater the drift, i.e. integration->stabilization w/ time. 8/n
assembly drift
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Kari Hoffman @karihoffman.bsky.social · 30/07/2026
It looks like experience changes the likelihood and duration of coordination among assemblies, at least in this cross-sectional approach (Old/New). Inspired by @denisejcai.bsky.social, we wondered if experience-dependent change would also appear as gradual drift in task-related activation? 7/n
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Kari Hoffman @karihoffman.bsky.social · 30/07/2026
The old metassemblies don't just co-activate more, they coordinate for LONGER ⏱️ Markov modeling and cross-correlograms show mutual reinforcement: half-widths can extended 500ms+, beyond the SWR window we’d assumed. --> The temporal reach of the metassembly groups grows with experience. 6/n
schematic from the paper's HMM showing transitions from baseline and inactive states to the active state. The activation from one assembly to another of the "metassemblies" was stronger for old then new metassemblies. Below, the crosscorrelograms shows that strong 'instantaneous' pairs of old metassemblies are more sustained in time than new metassemblies.
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Kari Hoffman @karihoffman.bsky.social · 30/07/2026
Old assemblies don't just reactivate more, they are more organized. When pairs of old assemblies reactivate together (or in opposition) during the task, the pattern is preserved in sleep; New assembly pairs also have such 'Metassemblies' in the task, but they aren't preserved in sleep. 5/n
Metassemblies - pairwise activation of assemblies - shown sorted for task and again in sleep. Old metassemblies were preserved between task and sleep.
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Kari Hoffman @karihoffman.bsky.social · 30/07/2026
👀In sleep + SWRs, Old assemblies reactivated more strongly than New assemblies! Perhaps sleep reactivation isn't just benefiting consolidation of what's *NEW*, but also helps restructure or reinforce what's already learned. We further examined this idea of structuring of assemblies over time. 4/n
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Kari Hoffman @karihoffman.bsky.social · 30/07/2026
Distinct patterns of population activity (cell assemblies) represented the different sequence types (New/Old), and were better decoded than single-unit activity. --> The populations carried memory-specific information during the task. But what about sleep? Sharp-wave ripples? Reactivation? 3/n
from the population activity covariance matrix, we find cell assemblies - population cofiring motifs - some of which occur preferentially during new-sequences or during old-sequences.
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Kari Hoffman @karihoffman.bsky.social · 30/07/2026
The setup: macaques learned multi-touchscreen sequences in an immersive enclosure: a "new" or "recent" (1-day old) sequence on one side and an "old" sequence (learned ~6 weeks' prior) on the other, while we recorded from the hippocampus and connected regions during the task and then in sleep. 2/n
enclosure with touchscreens on the left, single unit ensembles activated during the task on the right
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Kari Hoffman @karihoffman.bsky.social · 30/07/2026
📣New paper! How does the sleeping brain help us to integrate new experiences while managing memories from the past? For his PhD work, @sabbaspoor.bsky.social recorded hippocampal ensembles in freely moving monkeys and found something unexpected. 🧵1/n www.nature.com/articles/s41... 🧪🧠📈👩‍🔬#OpenAccess
nature.com
Experience reorganizes content-specific memory traces in macaques - Nature Neuroscience
In macaques, old memories, relative to new ones, are supported by more stable and interconnected cell assemblies. New-biased and old-biased assemblies reactivate during overnight sleep and can sometim...
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Danielle Beckman @daniellebeckman.bsky.social · 29/07/2026
One more nail in the coffin of the "it's just deconditioning" hypothesis. 60 days of strict bed rest ≠ #LongCOVID or #MECFS. Rob's group shows that while exercise capacity may be similarly reduced, the underlying skeletal muscle biology is VERY different. Time to move beyond outdated assumptions.
Nature Communications
Article in Press
Skeletal muscle properties in long COVID and ME/CFS differ from those induced by bed rest
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Helen Barron @helencbarron.bsky.social · 28/07/2026
***New preprint from the lab*** showing “Generative replay across hippocampal-neocortical circuits”. In sleep we show spiking sequences in V1 (sensory neocortex!) that represent information that has not been directly experienced www.biorxiv.org/content/10.6... @bndu.ox.ac.uk @ndcnoxford.bsky.social
biorxiv.org
Generative replay across hippocampal-neocortical circuits
To make flexible decisions, the brain needs to make inferences between events that were not directly experienced together. In sharp-wave ripple (SWR) events, during periods of rest and sleep, spiking ...
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Reza Shadmehr @rezashadmehr.bsky.social · 28/07/2026
If an action results in error, each neuron requires an individualized teaching signal that guides change in its output. This is the credit assignment problem of learning. Are there neurons in the brain that can compute such a sophisticated teaching signal? Yes. www.biorxiv.org/content/10.6...
biorxiv.org
Climbing fibers encode the gradient of a loss function for the cerebellum
Neurons in the brain are often many synapses away from motoneurons, yet if a movement results in error, each distant neuron needs a teacher that considers its specific contribution to production of th...
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Kari Hoffman @karihoffman.bsky.social · 10/07/2026
2 more than usual nowadays
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Biyu Jade He @biyuhe.bsky.social · 09/07/2026
New paper alert from our lab! nature.com/articles/s41... We used stimuli sequences following 1/f statistical patterns—an ubiquitous statistical structure in natural stimuli—to probe predictive processing in the human brain. How does the brain predict upcoming sensory inputs based on past inputs?
nature.com
Neural mechanisms of time-forward predictions for naturalistic auditory tone sequences - Nature Communications
A longstanding question is how the brain predicts complex, naturalistic sensory events and updates those predictions when expectations are violated. Using intracranial recordings, the authors show tha...
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Per Axbom @axbom.com · 10/07/2026
Olivia Guest is my favorite person to follow when it comes to calling out AI hype based on a deep and thoughtful understanding of it. This point is so very important. It's ok not to know things. #FollowFriday
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Danielle Beckman @daniellebeckman.bsky.social · 10/07/2026
Most people who develop #dementia don't have a family history of the disease. Interactions between vascular health, metabolism, environmental exposures, and *increasingly* pathogens also play a role. Brain aging starts decades before symptoms appear. 🧠 www.nature.com/articles/d41...
nature.com
How to avoid dementia — what the science really says
Ambitious studies have been examining the protective effects of diet, exercise and socializing — with surprising results.
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Oscar Chadney @oscar-chadney.bsky.social · 09/07/2026
I’m excited to share our latest preprint, and the main work from my PhD, on the role of the direct entorhinal input in hippocampus CA1 spatial coding. 1/9
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Morgan Barense @barense.bsky.social · 09/07/2026
Check out our @royalsociety.org Philosophical Transactions B theme issue, "The role of hippocampal prediction: bridging perception and memory." Thanks to all our fabulous authors, and my co-editors @peterkok.bsky.social and @mariamaly.bsky.social who dreamed it up and kept the train on the tracks.
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Phil Williams @philinvestigates.com · 18/03/2026
A very personal story that I have kept to myself for four months posts tomorrow morning to HateComesToMainStreet.com. Subscribe now to get immediately notified.
hatecomestomainstreet.com
Hate Comes to Main Street | Phil Williams | Substack
Examining the influence of white supremacists, neo-Nazis, Christian nationalists, and QAnon conspiracy theorists on Main Street America. Click to read Hate Comes to Main Street, by Phil Williams, a Su...
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Pablo Fernandez Velasco @pfvelasco.bsky.social · 16/03/2026
Here is a brief overview of existing approaches to studying "real-world" navigation. Really happy to have worked on this with @hugospiers.bsky.social & @antoinecoutrot.bsky.social! arxiv.org/pdf/2603.11347
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Jonathan Pillow @jpillowtime.bsky.social · 17/12/2025
Bichan Wu (@bichanw.bsky.social) & I wrote a tutorial paper on Reduced Rank Regression (RRR) — the statistical method underlying "communication subspaces" from Semedo et al 2019 — aimed at neuroscientists. arxiv.org/abs/2512.12467
arxiv.org
Reduced rank regression for neural communication: a tutorial for neuroscientists
Reduced rank regression (RRR) is a statistical method for finding a low-dimensional linear mapping between a set of high-dimensional inputs and outputs. In recent years, RRR has found numerous applica...
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Kari Hoffman @karihoffman.bsky.social · 13/12/2025
For all 3, IMO cross-task, cross-region, cross-species will offer insights. The sparse sampling across these is a hindrance (Blake’s point was directed at the task component). We’re working on it…
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Juan Gallego @juangallego.bsky.social · 13/12/2025
let's talk in person! but fwiw I personally think that we talk about dimensionality! to me the important ideas within the neural manifold framework are: (1) manifolds reflect biological constraints, (2) capture population-wide functions/computations, (3) manifolds (may) have ontological power
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Kari Hoffman @karihoffman.bsky.social · 13/12/2025
🤩 + impressive answer 🧭🚕 @ 2:50 “Trust me, knowledge is power” 💀 This is my guy.
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Mark Histed @markhisted.org · 13/12/2025
Good resp to Bhattacharya, noting the agenda of The Spectator. When we rebut Trump attacks on science it’s good to talk about his agenda and the agenda backing him—he was selected for the job by donors who want to privatize federal funding and use science as a wedge issue to get votes for thr side.
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