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Jayna Raghwani

@jraghwani.bsky.social
169 followers 262 following 14 posts

Computational biologist | Virus evolution & ecology | Genomics

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Reposted by Jayna Raghwani
Gytis Dudas @evogytis.bsky.social · 22/09/2026
baltic v1.0.0 is live! Get it via pip or clone from Github repo. Now with documentation (baltic.readthedocs.io) & a gallery of tutorials & examples (phylo-baltic.github.io/baltic-gallery, still WIP). Huge thanks to @barney-potter.bsky.social for all the initiative & help along the way. #ViroSky
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Royal Society Publishing @royalsocietypublishing.org · 26/08/2026
Join Professor Kayla King for the Francis Crick Prize Lecture on 14 October 2026. @kayla-king.bsky.social will explore the rapid evolution of pathogens across the tree of life. She will also reveal what drives evolutionary changes in pathogen virulence: royalsociety.org/science-even...
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Sam Abbott @seabbs.bsky.social · 05/08/2026
#julia for infectious disease modelling workshop @lshtm.bsky.social in September community.epinowcast.org/t/topic/427
community.epinowcast.org
𝗥𝗲𝗴𝗶𝘀𝘁𝗲𝗿 𝗬𝗼𝘂𝗿 𝗜𝗻𝘁𝗲𝗿𝗲𝘀𝘁: 𝗠𝗼𝗱𝗲𝗹𝗹𝗶𝗻𝗴 𝗘𝗽𝗶𝗱𝗲𝗺𝗶𝗰𝘀 𝘄𝗶𝘁𝗵 𝗝𝘂𝗹𝗶𝗮 𝗪𝗼𝗿𝗸𝘀𝗵𝗼𝗽
We are hosting a free 3-day workshop on 𝟭𝟲𝘁𝗵-𝟭𝟴𝘁𝗵 𝗼𝗳 𝗦𝗲𝗽𝘁𝗲𝗺𝗯𝗲𝗿 𝟮𝟬𝟮𝟲 at 𝗟𝗦𝗛𝗧𝗠! Participants will learn how to use the Julia programming language to build deterministic models from first principles, st...
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A. Murat Eren (Meren) @merenbey.bsky.social · 03/08/2026
What makes human guts and coral reefs similar? Here is a blog post with some thoughts on ecosystem stability, stress, and microbiome, following a fresh pre-print by Marko Terzin et al: merenlab.org/blog/coral-r...
merenlab.org
From coral reefs to human guts: stress is stress
Reefs and colons share no taxa, no host, no timescale, but they report stress the same way, which tells us where NOT to look for solutions.
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Jayna Raghwani @jraghwani.bsky.social · 24/07/2026
We’re hiring!! Interesting in fieldwork and working with cute mice? See below for further information
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Jayna Raghwani @jraghwani.bsky.social · 23/07/2026
📣 📣 📣 We’re looking for two field techs to support wild rodent fieldwork in the UK and join a collaborative team across RVC, Oxford, and Glasgow. NB: Candidates must already have the right to work in the UK. Full details: bit.ly/4pKY2nF Please share widely! 🐭 Video credit: Elise Ringwaldt
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Xav Harrison @xavh.bsky.social · 17/06/2026
We are now recruiting for a 3 year NERC-funded postdoc to study the transmission dynamics of antimicrobial resistance (AMR) in migratory birds. Based in the Wild Microbiome Lab @uniexecec.bsky.social in beautiful Cornwall.
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UKVF.bsky.social @ukvf.bsky.social · 12/05/2026
📢 Registration is now open for the first UK Virome Forum meeting! This two-day event will bring together UK-based researchers using genomic approaches to study viromes. Whether you are investigating viral communities in soil 🌱, the human gut 🦠, or whales 🐋, this is your space!
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stn-wame.bsky.social @stn-wame.bsky.social · 12/05/2026
Attention ECRs! The next round of our ECR Research Exchanges is open for application! Up to €1400 for travel & accommodation for visits to groups with complementary research interests. You can find the application here: bit.ly/4ntSVY4 and more info on our website: www.wamestn.com/research-exc...
docs.google.com
2026_WAME_ECR_Exchange.docx
Wild Animal Microbiome Evolution – WAME A Special Topic Network funded by ESEB ECR Research exchange visits Funding available to help early career scientists visit another research group with compleme...
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Jayna Raghwani @jraghwani.bsky.social · 11/05/2026
Working on any aspects of host viromes or viral communities and UK based? Join the newly established UK Virome Forum @ukvf.bsky.social to connect with other researchers and get updates on an upcoming event in October!
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Gytis Dudas @evogytis.bsky.social · 22/04/2026
Please share! My lab has an open fully-funded PhD position at Vilnius University's Life Sciences Center in Lithuania. The PhD project will involve identifying missing orthomyxovirus segments from public sequence data. Applicants must hold an MSc by June & have bioinformatics experience. 1/2
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Freya Harrison @friendlymicrobe.bsky.social · 20/04/2026
My super department @warwicklifesci.bsky.social is hiring 6 assistant profs in the wake of recent retirements. We're looking for people in microbiology/infection, cellular disease / immunity; environmental biology; and plant/crop science. #MicroSky warwick-careers.tal.net/vx/lang-en-G...
warwick-careers.tal.net
Assistant Professor x6 (111522-0426) - University of Warwick
Title: Assistant Professor x6 (111522-0426). Application Deadline: . Position Type: Permanent
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S Otto @sarperotto.bsky.social · 31/03/2026
Insightful summary of an extraordinary person being extraordinarily fired: "you don't silence a woman of color who raised concerns about racism by silencing her...The fingerprints are distributed perfectly across the system." www.linkedin.com/pulse/uclas-...
linkedin.com
UCLA's Most Decorated Ecologist Just Got Fired : Here's the sequence
In January of 2025, at the ICTP ICTS winter school at NCBS, Priyanga Amarasekare offered to take me and a few other students out for my birthday. She didn't have to do that.
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Kayla King, Ph.D. @kayla-king.bsky.social · 03/03/2026
A nice collaboration from post-docs in my lab 😊 onlinelibrary.wiley.com/doi/full/10.... @jingdi.bsky.social @luismsilva.bsky.social @paradyseb.bsky.social @molecularecolup.bsky.social
onlinelibrary.wiley.com
Integrating the Microbiome Into Infection Ecology and Evolution in Wild Animals
Parasites are a ubiquitous force in nature threatening wildlife populations and ecosystems. Interactions between hosts and their parasites are impacted by host-associated microbiomes, which are essen...
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Avery Holmes @averyholmes.bsky.social · 09/03/2026
Excited to share my first paper! Co-circulating viruses in bats show diverse spatial movement patterns, perhaps due to different infection biology. Not all viruses move like their hosts, or like other viruses; Use them for inference with awareness and care!🧪 onlinelibrary.wiley.com/doi/10.1111/...
onlinelibrary.wiley.com
Virus‐Dependent Geographic Structure of Co‐Circulating Viruses in a Single Bat Species
Understanding the spatial spread of viruses within wildlife populations is often a key component of disease management efforts. Viral spread is likely constrained by host ecology, but inter-virus dif...
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Reposted by Jayna Raghwani
Matt Arnold @matt-arnold-bio.bsky.social · 16/03/2026
Wondering what happens if a seal sneezes on a whale? We were! 🦭🤧🐋 We sequenced viromes from 16 species of marine mammals stranded in Scotland. Of >100 viruses detected, ~10% appeared in multiple species (one in both seals & cetaceans!), mirroring known interspecies interactions in Scottish waters.
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ARTIC network @artic.network · 12/03/2026
ARTIC are hiring! Postdoctoral opportunity in metagenomics at the University of Birmingham edzz.fa.em3.oraclecloud.com/hcmUI/Candid...
edzz.fa.em3.oraclecloud.com
Research Fellow (Postdoctoral) - School of Biosciences - 107071 - Grade 7
This post-doctoral position will contribute to both complementary programmes, developing ‘broadband’ metagenomic sequencing capabilities for rapid detection and characterisation of emerging and unknow...
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IDDjobs @iddjobs.org · 05/03/2026
PhD position (Hatfield/London, UK) Impact of heterogeneity in contact rates and lifespan on virus transmission and persistence in natural populations with @jraghwani.bsky.social Matthew Hall; @krisparag.bsky.social at Royal Veterinary... More details: iddjobs.org/jobs/2482
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Kevin Daly @gingerhowley.bsky.social · 25/02/2026
Can safely way this is the craziest and coolest study I have led. We chart the evolution of sheeppox virus, finding it in the Eurasian steppe ~3700 years ago, and also in a LOT of parchment from medieval Europe (made from a range of animals skins!) #aDNA
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Tanja Stadler @tanjastadler.bsky.social · 20/02/2026
We have an open Assistant Professor position (tenure track) @ethz.ch in Computational Immunology - ethz.ch/en/the-eth-z... Please apply / share!
ethz.ch
Assistant Professor (Tenure Track) of Computational Immunology
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Jayna Raghwani @jraghwani.bsky.social · 14/02/2026
📢 Funded PhD opportunity (UK Home fees + stipend) With me (RVC), Matthew Hall (LSHTM), and @krisparag.bsky.social (Imperial College) Interested in bringing together field data and theory to understand how viruses persist in wildlife populations? Full details here: bit.ly/4bVTBl4
bit.ly
Investigating the impact of heterogeneity in contact rates and lifespan on virus transmission and persistence in natural populations at Royal Veterinary College on FindAPhD.com
PhD Project - Investigating the impact of heterogeneity in contact rates and lifespan on virus transmission and persistence in natural populations at Royal Veterinary College, listed on FindAPhD.com
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Melissa Hart @melissa-natalie.bsky.social · 28/01/2026
Excited about parasites? Love watching movies? Come join our Wellcome-funded project! Parasitology friends, please do share far and wide.
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European Virus Bioinformatics Center @evbc.bsky.social · 26/01/2026
New resource #VirJenDB delivers a #FAIR, community driven database of virus sequences and metadata across the entire virosphere, unifying phage and eukaryotic virus research infrastructures 📄 doi.org/10.1093/nar/gkaf1224 👤EVBC: R. Edwards, M. Marz, S. Saghaei, S. Roux, B. Dutilh, N. Cassmann
doi.org
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Michael Wagner @michiwagner4.bsky.social · 19/12/2025
🚨 Postdoctoral Opportunity for Female Scientists🚨 The University of Vienna is awarding at least 20 fully funded 4 year postdoctoral positions to outstanding female scientists Interested? Get in touch via direct message careers.univie.ac.at/en/postdoc/e... #MicroSky 🧪 #PostDoc @univie.ac.at
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Megan O'Driscoll @meganodris.bsky.social · 18/12/2025
The final piece of my PhD work is now published in Science Translational Medicine! We present a new framework to jointly infer epidemiological and antigenic parameters from multi-pathogen population serological studies🦠 www.science.org/stoken/autho...
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Pleuni Pennings @pleunipennings.bsky.social · 17/12/2025
Article about scientists leaving (or not leaving) the US - including me! I landed in a truly great spot - but what's happening in the US is messed up. @isemevol.bsky.social @sfstatebio.bsky.social @umontpellier.bsky.social
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Nandita Garud @nanditagarud.bsky.social · 17/12/2025
Grateful to share our paper on gene-specific selective sweeps in human gut microbiomes, now out in Nature! It has been a joy to work with @rwolff.bsky.social, whose insights and hard work made this possible. www.nature.com/articles/s41...
nature.com
Gene-specific selective sweeps are pervasive across human gut microbiomes - Nature
Development and application of the integrated linkage disequilibrium score (iLDS) reveals both selective pressures impacting the human gut microbiome and the mechanisms by which gut bacteria adapt to ...
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Dr Alison Peel @alibat.bsky.social · 16/12/2025
🦇 Two PhD positions available on our new ARC Discovery Grant: "From Diversity to Disease: Viral Ecology, Evolution and Persistence in Bats" The project will investigate how viral diversity evolves and persists, with a particular focus on recently discovered henipaviruses in Australian flying foxes.
The torso and head of a black flying fox hanging upside down, looking directly at the camera, above the words "PhD positions available in bat viral ecology and evolution".
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James Kosmopoulos @kosmopoulos.bsky.social · 10/12/2025
Soil viruses are important regulators of ecosystem function, but what are their roles in environments that face long-term degradation and restoration? In our paper published today in Nature Micro, we asked how soil viruses influence peatland recovery, and vice versa. www.nature.com/articles/s41...
nature.com
Ecosystem health shapes viral ecology in peatland soils - Nature Microbiology
Metagenomics shows that viral diversity and community structure are shaped by geography and ecosystem health status, positioning viruses as unexpected players in peatland restoration.
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Jayna Raghwani @jraghwani.bsky.social · 08/12/2025
Just a few days to go until the next London Infection & Ecology Network @lien-london.bsky.social event at the Natural History Museum! A great chance to connect with researchers across ecology and infectious disease. Register here: www.eventbrite.co.uk/e/london-inf...
eventbrite.co.uk
London Infection and Ecology Meeting, 12th December, Natural History Musuem
Join us in person at the Natural History Museum on Dec 12 for the London Infection and Ecology Meeting!
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Ed Hutchinson @socialinfluenza.bsky.social · 28/11/2025
🚨New Paper!🚨 Some like it hot: Matt Turnbull and @samjwilsonphd.bsky.social collaborated with groups from @cvrinfo.bsky.social, @cam.ac.uk and beyond to show that, while our fevers are hot enough to control human flu, they don't protect against avian influenzas adaptd to the hotter bodies of birds
science.org
Avian-origin influenza A viruses tolerate elevated pyrexic temperatures in mammals
Host body temperature can define a virus’s replicative profile—influenza A viruses (IAVs) adapted to 40° to 42°C in birds are less temperature sensitive in vitro compared with human isolates adapted t...
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I-Ting Tu @itingtu.bsky.social · 11/11/2025
My 1st first-author paper is out as a preprint! Excited to share the fascinating story of marine-feeding vampire bats 🌊🦇 We found that marine-diet bats were exposed to #H5#AvianFlu 🦠 from marine wildlife and could potentially spread it to livestock via blood feed🩸 doi.org/10.1101/2025.11.09.686930
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Jayna Raghwani @jraghwani.bsky.social · 29/09/2025
Excited to share that our paper on the relationship between viral load and metagenomic outputs in wildlife samples is now published in Microbial Genomics @microbiologysociety! 🎉 Fantastic collaboration with a brilliant team. More info: 📖 tinyurl.com/ywb7tvjm
tinyurl.com
Quantifying viral load and characterizing virus diversity in wildlife samples with target enrichment sequencing
Metagenomics is a powerful tool for characterizing viruses, with broad applications across diverse disciplines, from understanding the ecology and evolutionary history of viruses to identifying causat...
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Zamin Iqbal @zaminiqbal.bsky.social · 10/09/2025
Sometimes you meet absolutely incredible bioinfo-magicians. It was a huge privilege when @shenwei356.bsky.social joined our group for a year on an @embl.org sabbatical. While here, he developed a new way of aligning to millions of bacteria, called LexicMap 1/n www.nature.com/articles/s41...
nature.com
Efficient sequence alignment against millions of prokaryotic genomes with LexicMap - Nature Biotechnology
LexicMap uses a fixed set of probes to efficiently query gene sequences for fast and low-memory alignment.
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PLOS Biology @plosbiology.org · 22/08/2025
Will a #virus spillover into a new host species lead to dead-end infection or sustained #epidemic? This study uses a nematode-virus model to show that early #spillover traits, especially infection prevalence & shedding, are important predictors of viral persistence @plosbiology.org 🧪 plos.io/3UCnZHp
Top: Experimental design depicting the passage experiment and the methods for quantifying infection prevalence, shedding ability, and infection prevalence in spillover populations. Middle: Host strains are ordered by the number of virus-positive plates over the course of the experiment (positive control C. elegans strain JU1580 set farthest right). Passage 0 denotes the exposure population. Note that the extraction procedure for passage 0 plates was different from the subsequent passages; many adult worms were removed from passage 0 populations to measure infection prevalence, intensity, and shedding (see methods). Bottom: Strains differed in epidemiological characteristics including B) maximum likelihood prevalence of infection, C) infection intensity (corrected median Ct), D) maximum likelihood shedding ability (the probability that 1 infected worm could cause visible fluorescence on a shedding plate), and E) relative susceptibility.
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Dr Alison Peel @alibat.bsky.social · 21/07/2025
🦇 NEW RESEARCH: Our 3-year study of Australian flying foxes identified six co-circulating coronaviruses, with highest rates of infection and co-infection in young bats, and evidence of circulating recombinants 🧪🌏 🧵 Available open access in @natcomms.nature.com 📄 www.nature.com/articles/s41...
doi.org
Synchronized seasonal excretion of multiple coronaviruses coincides with high rates of coinfection in immature bats - Nature Communications
Bats harbor diverse coronaviruses but temporal dynamics are less well studied. Here, the authors analyzed coronaviruses in Australian flying foxes over 3 years showing peak shedding and co-infections ...
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Sayan Das (he/him) @s4yandas.bsky.social · 09/07/2025
New in @science.org We built a safe, atomic-resolution version of the Powassan virus—a deadly tick-borne #flavivirus with no vaccine. ✅ First structure ever ✅ Safe to handle (BSL-2) ✅ Platform for vaccines & antivirals Let me show you 🧵 (1/5) Link: www.science.org/doi/10.1126/...
science.org
Atomic-resolution structure of a chimeric Powassan tick-borne flavivirus
The 2.8-Å resolution structure is presented for a chimeric construct of an emerging tick-borne flavivirus, Powassan virus.
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Ed Hutchinson @socialinfluenza.bsky.social · 04/07/2025
Are you doing a PhD or research Masters in Virology? Want to be part of a community of like-minded researchers from across the UK and Ireland? We're excited to announce the first annual conference run by and for postgraduate research students in Virology. Please sign up, and please spread the word!
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Erin Harvey @erinharvey.bsky.social · 02/07/2025
Interested in metagenomic virus discovery but don't know where to start? In collaboration with CERI and a group of virus discovery experts from around the world, we'll be running a 5 day hands-on workshop in virus discovery. Find out more here: climade.health/2025/06/22/m...
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Mark A. Hanson @hansonmark.bsky.social · 10/06/2025
New from The Strain Team: 🎊 Springer Nature Discovers MDPI 🎊 Springer Nature has spawned a copycat journal series called "Discover" mimicking #MDPI journal titles and citation behaviours. We even made a browser game to prove it (see 🔗). Gross! 😀 1/n #ResearchIntegrity #SciPub #AcademicSky
the-strain-on-scientific-publishing.github.io
Spinger Nature Discovers MDPI – The Strain on Scientific Publishing
Home page for the paper ‘The Strain on Scientific Publishing’ by Mark A Hanson, Dan Brockington, Paolo Crosetto and Pablo Gomez Barreiro
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Chris Illingworth @chrisillingworth.bsky.social · 28/05/2025
We have a job going for a bioinformatician / computational biologist at the CVR in Glasgow. www.jobs.gla.ac.uk/job/computat...
jobs.gla.ac.uk
Computational Biologist/Bioinformatician
Computational Biologist/Bioinformatician COLLEGE OF MVLSSchool of Infection and Immunity Job PurposeThe post holder will join the Bioinformatics group at the School of Infection and Immunity, MRC-U...
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Thelonevirologist @thelonevirologist.bsky.social · 27/05/2025
Ecology and evolutionary trajectories of morbilliviruses in Neotropical bats www.nature.com/articles/s41...
nature.com
Ecology and evolutionary trajectories of morbilliviruses in Neotropical bats - Nature Microbiology
Investigations in wild bats and non-human primates in Brazil and Costa Rica inform about diverse Morbillivirus ecology in neotropical bats and host jumps, and about zoonotic potential of morbillivirus...
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Ecological Data Science @uofgecodatasci.bsky.social · 15/05/2025
📣🚨📣Deadline extended to 6th June 2025! 📣🚨📣 Applications are still open for our MSc+PhD scholarships in Ecological Data Science available to those from underrepresented groups. This offers fully funded MSc (full UK fees and UKRI stipend) followed by entry to our 4-year PhD programme.
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IDDjobs @iddjobs.org · 30/04/2025
Postdoc (Washington DC, USA) Rodent-borne virus risk in heterogeneous landscapes with @clfaust.bsky.social @jraghwani.bsky.social @bahanbug.bsky.social at @ox.ac.uk @uofglasgow.bsky.social @royalvetcollege.bsky.social @ilri.org... More details: iddjobs.org/jobs/2307
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BTO | British Trust for Ornithology @btobirds.bsky.social · 30/04/2025
BTO's Hugh Hanmer, Senior Research Ecologist, is a speaker at this webinar where he'll be discussing the decline in Blackbirds in the UK and the spread of Usutu virus. Sign up to attend on the link below. ⬇️
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James Hassell @jameshassell.bsky.social · 26/04/2025
📣 We’re hiring! 2-yr postdoc at Smithsonian’s NZCBI on an NSF-funded project with partners incl. Glasgow, RVC, Uganda MOH, Cary Institute. Focus: land use change, rodent movement, human-rodent contact, modeling disease risk, w/ plenty of fieldwork in Uganda. Details: tinyurl.com/SINSFR
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Stuart Neil @tetherin.bsky.social · 23/04/2025
New preprint from Luke Snell from GSTT, Suzanne Pickering in my lab and Rui Galao, my colleague at KCL. Here we examine in detail the evolution of the SARS CoV-2 spike in persistent infections, and essentially catch a potential variant in the act of developing. 1/n www.biorxiv.org/content/10.1...
biorxiv.org
Antibody escape drives emergence of diverse spike haplotypes resembling variants of concern in persistent SARS-CoV-2 infections
Evolution of SARS-CoV-2 in long-term persistent infections is hypothesised to be a major source of variants of concern (VOC). However, the linkage of intra-host variants into haplotypes that reflect v...
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Jayna Raghwani @jraghwani.bsky.social · 22/04/2025
Just over a week left to the London Infection Ecology Network event at the RVC with a fantastic list of speakers. For further info and to grab your tickets: www.eventbrite.co.uk/e/london-inf...
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Jayna Raghwani @jraghwani.bsky.social · 18/04/2025
📣 Excited annouce that the next London Infection Ecology Network (LIEN)🦠🌎🧪🌳🌤️ in-person event is taking place on April 30th at the RVC (Camden)! If you’d like to attend, please register for a free ticket via Eventbrite: 🔗 www.eventbrite.co.uk/e/london-inf...
eventbrite.co.uk
London Infection and Ecology Meeting
LIEN fosters interdisciplinary collaboration between ecology and health sciences, supporting inclusive research and innovation.
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Eveliina Hanski @eveliinahanski.bsky.social · 10/04/2025
We compared gut microbiota across >800 lab and wild house mice. Wild mice have more diverse, aerotolerant, and dynamic microbiotas than their lab counterparts. See our latest paper here: bmcmicrobiol.biomedcentral.com/articles/10.... #gutmicrobiome #musmusculus #wildmice
bmcmicrobiol.biomedcentral.com
Wild house mice have a more dynamic and aerotolerant gut microbiota than laboratory mice - BMC Microbiology
The mammalian gut microbiota is a complex microbial community with diverse impacts on host biology. House mice (Mus musculus) are the major model organism for research on mammals, but laboratory domes...
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