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Izumi Fukunaga

@ifukunaga.bsky.social
601 followers 391 following 39 posts

Neuroscientist with interests in olfaction, circuits, neurophysiology of behavior, and more. Associate professor at OIST. Profile: www.oist.jp/research/research-units… Lab: www.oist.jp/research/research-units…

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Reposted by Izumi Fukunaga
Society for Neuroscience @sfn.org · 27/05/2026
Abstract submission for #SfN26 is now open! Share your findings, spark new conversations, and connect with researchers who care about the same questions you do. Avoid the last-minute rush. Submit your abstract today! 🔗 vist.ly/55m24
Promotional image for the Neuroscience 2026 conference in Washington, D.C. showcasing a group discussing research posters.
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Izumi Fukunaga @ifukunaga.bsky.social · 22/05/2026
New preprint from our lab! In an olfactory DNMS task, we find a sensory -> choice gradient across mouse frontal cortex. The secondary motor cortex showed minimal sensory coding and less intermediary characteristics.
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Datta Lab @dattalab.bsky.social · 29/04/2026
Excited to see our paper describing a stereotyped receptor map for smell (led by @davidhbrann.bsky.social ) out in the world! See below for short thread with open access link to paper www.nytimes.com/2026/04/29/s...
nytimes.com
Scientists Unveil ‘Long Lost’ Map for Smell
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Tobias Ackels @tobiasackels.bsky.social · 12/05/2026
🚨 Preprint alert! 🚨 How does the olfactory bulb transform overlapping sensory inputs into representations that are easier to distinguish? New study by Sina Tootoonian, Yikai Yang, @andreas-t-schaefer.bsky.social @crick.ac.uk and myself.‬ www.biorxiv.org/content/10.6... A short 🧵 below
biorxiv.org
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Izumi Fukunaga @ifukunaga.bsky.social · 21/04/2026
We are recruiting a post-doc to study olfactory processing and decision-making in rodents, combining quantitative behavior with neurophysiology. www.oist.jp/careers/post... Please share with interested colleagues and trainees 🙏
oist.jp
Post-doctoral Researcher - Sensory and Behavioural Neuroscience Unit
Post-doctoral positions are available in the Sensory and Behavioural Neuroscience Unit (https://www.oist.jp/research/research-units/sbn) at Okinawa Institute of Science and Technology Graduate Univers...
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Venki Murthy @neurovenki.bsky.social · 29/01/2026
New preprint from our group (collaboration with @sueyeonchung.bsky.social) showing that discriminating odor components within a complex mixture is constrained by neural sensitivity rather than background interference - likely due to sparse representations at the front end.
biorxiv.org
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Katrin Vogt @katrinvogt.bsky.social · 21/01/2026
The second paper from the lab is now available on bioRxiv: www.biorxiv.org/content/10.6... We discovered that cannibalistic behavior in fly larvae is social-context dependent. Larval groups avoid dead conspecifics; individuals show high attraction. They only do it when no one is watching 😉
Several fly larvae are crawling on an agar surface.
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Reposted by Izumi Fukunaga
Society for Neuroscience @sfn.org · 20/01/2026
You now have more time to submit a proposal for a #SfN26 session or workshop. Your ideas are crucial to building a dynamic and impactful scientific program. 📅 Submit your proposal by the final deadline: Monday, January 26, 5 p.m. EST. 🔗 vist.ly/4nj67 #neurosky #neuroskyence
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Reposted by Izumi Fukunaga
Society for Neuroscience @sfn.org · 09/01/2026
Share your expertise, inspire early career researchers, and help cultivate a supportive neuroscience community. Submit a proposal for an “Ask Anything" session or a Professional Development Workshop at #SfN26 by Wednesday, January 21. 🔗 vist.ly/4m7hv #neurosky
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Reposted by Izumi Fukunaga
Andreas Schaefer @andreas-t-schaefer.bsky.social · 27/11/2025
X-rays can resolve ultrastructure - milestone for ultrastructure imaging w/o cutting. Thanks to an amazing team - @carlesbosch.bsky.social @adrianawanner.bsky.social Ana Diaz and collaborators @crick.ac.uk @psich.bsky.social and @esrf.fr and funders @wellcometrust.bsky.social @ukri.org
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Izumi Fukunaga @ifukunaga.bsky.social · 17/10/2025
📣If you are attending #SfN in San Diego this year, make sure to stay until the end. Sonja Hofer @sonjahofer.bsky.social from @sainsburywellcome.bsky.social will give a ✨special lecture ✨on Wednesday 19th Nov, 10:30-11:30 🗓️ Not to be missed!! www.sfn.org/meetings/neu...
sfn.org
Lectures
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Reposted by Izumi Fukunaga
Simone Pigolotti @simonepigolotti.bsky.social · 30/10/2025
Independent researcher fellowships (non-tenure track) at OIST, with a focus on broadly defined theory www.oist.jp/research/bur...
oist.jp
Buribushi Fellowship
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Reposted by Izumi Fukunaga
Gioele La Manno @gioelelamanno.bsky.social · 16/10/2025
🧠 The Lipid #Brain Atlas is out now! If you think #lipids are boring and membranes are all the same, prepare to be surprised. Led by @lucafusarbassini.bsky.social with Giovanni D'Angelo's lab, we mapped membrane lipids in the mouse brain at high resolution. www.biorxiv.org/cgi/content/...
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Izumi Fukunaga @ifukunaga.bsky.social · 17/10/2025
📣If you are attending #SfN in San Diego this year, make sure to stay until the end. Sonja Hofer @sonjahofer.bsky.social from @sainsburywellcome.bsky.social will give a ✨special lecture ✨on Wednesday 19th Nov, 10:30-11:30 🗓️ Not to be missed!! www.sfn.org/meetings/neu...
sfn.org
Lectures
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Reposted by Izumi Fukunaga
Andreas Schaefer @andreas-t-schaefer.bsky.social · 01/10/2025
Lots of exciting clinical PhD projects at Crick - including the opportunity for neurosurgeons to work with us and record electrical activity in patients with neuropixels probes. Please share widely!
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Venki Murthy @neurovenki.bsky.social · 19/09/2025
(edited repost) Thrilled to see our computational work on adaptive shaping of behavior (we call it outcome-based curriculum learning) in PLoS Comp Biol! @wl-tong.bsky.social, @gautamreddy.bsky.social & I formalize curricula in any RL task that can be framed as sequential simple-to-complex behavior.
journals.plos.org
Adaptive algorithms for shaping behavior
Author summary Animals are commonly trained by ‘shaping’ their behavior using a sequence of simpler tasks towards a complex behavior. Numerous schools of thought have proposed heuristics for shaping b...
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Reposted by Izumi Fukunaga
Simone Pigolotti @simonepigolotti.bsky.social · 03/09/2025
Open faculty positions in Physics at OIST
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Reposted by Izumi Fukunaga
Venki Murthy @neurovenki.bsky.social · 01/09/2025
We watched mice follow scent trails drawn on an “endless” treadmill. By manipulating trail geometry/statistics, perturbing mouse nose & brain, and modeling behavior with a Bayesian framework, we show that mice use predictive (rather than reactive) strategies.
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The Washington Post @washingtonpost.com · 05/08/2025
Humans and Neanderthals are virtually identical at the genetic level. Scientists are probing the differences to understand why we are here, and they aren’t.
wapo.st
One gene reveals clues to why humans thrived and Neanderthals didn’t
Some mice were more adept at seeking water after the gene change, signaling a behavioral change and potential cognitive advantage.
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Reposted by Izumi Fukunaga
OIST (Okinawa Institute of Science and Technology) @oistedu.bsky.social · 05/08/2025
Tiny changes in our brain chemistry sets us apart from Neanderthals and Denisovans – and when introduced into mice, seem to help females compete better for scarce resources 🧠 Read about how ADSL may have influenced our evolution www.oist.jp/news-center/...
oist.jp
Tracing brain chemistry across humanity’s family tree
Small changes to an enzyme suggest how modern humans differ from Neanderthals and Denisovans in biochemistry and behavior.
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Izumi Fukunaga @ifukunaga.bsky.social · 05/08/2025
Talking of understanding the brain in the evolutionary context… We have a new study out, led by Xiang-Chun Ju in Svante Pääbo’s lab at OIST: The activity and expression of adenylosuccinate lyase were reduced during modern human evolution, affecting brain and behavior www.pnas.org/doi/10.1073/...
pnas.org
PNAS
Proceedings of the National Academy of Sciences (PNAS), a peer reviewed journal of the National Academy of Sciences (NAS) - an authoritative source of high-impact, original research that broadly spans...
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Reposted by Izumi Fukunaga
FarrowLab @farrowlab.bsky.social · 24/07/2025
Fantastic to see this collaborative work with Hopi Hoekstra out in Nature (tinyurl.com/3at3zvby). Lead by @felixbaier.bsky.social and @katjareinhard.bsky.social. Not possible without @bramnuttin.bsky.social , Chen Liu and @arnausd.bsky.social. Excited to see where this work leads.
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James Briscoe @jamesbriscoe.bsky.social · 21/07/2025
Great technique from my @crick.ac.uk colleagues in @petrznam.bsky.social lab Reconstructing neural circuits with barcoded Rabies virus & in situ sequencing www.biorxiv.org/content/10.1...
biorxiv.org
Barcoded Rabies In Situ Connectomics for high-throughput reconstruction of neural circuits
Sequencing of oligonucleotide barcodes holds promise as a high-throughput approach for reconstructing synaptic connectivity at scale. Rabies viruses can act as a vehicle for barcode transmission, than...
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Reposted by Izumi Fukunaga
Andreas Schaefer @andreas-t-schaefer.bsky.social · 11/06/2025
Massive congratulations to everyone - predominantly of course @janice-bulk.bsky.social and @sophiesteculorum.bsky.social
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Izumi Fukunaga @ifukunaga.bsky.social · 13/06/2025
Animals’ sniffing drives rhythmic input to the olfactory system. How does this timing contribute to perception, especially beyond first steps of olfactory processing? We tested this using simple closed-loop optogenetics in our new paper: www.cell.com/iscience/ful...
cell.com
Decoding olfactory bulb output: A behavioral assessment of rate, synchrony, and respiratory phase coding
Neurogenetics; Behavioral neuroscience; Sensory neuroscience
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Reposted by Izumi Fukunaga
Lucia Prieto Godino @neuroluci.bsky.social · 12/06/2025
How do brain circuits evolve? We started looking for some answers by using synapse-resolution cross-species comparative connectomics on an entire olfactory circuit 👇 bit.ly/44aVm9E
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Paul Masset @paulmasset.bsky.social · 04/06/2025
Our work with Pablo Tano, @hyunggoo-kim.bsky.social Athar Malik, Alexandre Pouget and @naoshigeuchida.bsky.social exploring how dopamine neurons could enable multi-timescale reinforcement learning in the brain is out in @nature.com www.nature.com/articles/s41...
nature.com
Multi-timescale reinforcement learning in the brain - Nature
Individual dopaminergic neurons encode future rewards over distinct temporal horizons.
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Reposted by Izumi Fukunaga
OIST (Okinawa Institute of Science and Technology) @oistedu.bsky.social · 03/06/2025
Read the full research article in Physical Review X: doi.org/10.1103/Phys...
doi.org
Hyperdisordered Cell Packing on a Growing Surface
In rapidly growing oval squid, skin pigment cells form a ``hyperdisordered'' pattern where density fluctuations grow with scale, revealing a novel link between growth and patterning that may apply bro...
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Izumi Fukunaga @ifukunaga.bsky.social · 02/06/2025
For students in USA who are affected by the current situation: OIST Graduate School is accepting special applications right now. Deadline June 15, 2025 www.oist.jp/admissions/s...
oist.jp
Special Application Deadline for Students Accepted or Studying in the United States
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Greg Stephens @gjstephens.bsky.social · 30/05/2025
A vital and very enjoyable component of my academic work is teaching students at all levels how to extend the frontiers of knowledge. So I’m pleased to announce a set of Jupyter notebooks organized around our ideas for “physics of behavior”. You can find them here: github.com/oist/Physics...
github.com
GitHub - oist/Physics-of-Behavior-Tutorials
Contribute to oist/Physics-of-Behavior-Tutorials development by creating an account on GitHub.
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The Night Science Podcast @nightsciencepod.bsky.social · 26/05/2025
🔥 New episode of the Night Science podcast! The brilliant Eve Marder, professor at Brandeis University, talks with us about how "Recipe Science" ruins creativity. Apple: podcasts.apple.com/us/podcast/n... Spotify: open.spotify.com/episode/4mSv...
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Society for Neuroscience @sfn.org · 21/05/2025
📣 #SfN25 abstract submission is now open! Share your research with the global neuroscience community. Start now to avoid the last-minute rush! 🔗 bit.ly/3G5vEde #NeuroSky #AcademicChatter
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Reposted by Izumi Fukunaga
Josh Johansen @jojolab.bsky.social · 15/05/2025
I’m excited to share a new paper from the lab. The study led by Xiaowei Gu reveals how the mPFC encodes complex emotional memories, using an internal model to infer emotional associations and memories via projections to the amygdala. a🧵(1/8) rdcu.be/el19t
rdcu.be
Prefrontal encoding of an internal model for emotional inference
Nature - Neurons in the rodent dorsomedial prefrontal cortex encode a flexible internal model of emotion by linking directly experienced and inferred associations with aversive experiences.
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Sepiedeh Keshavarzi @sepikeshavarzi.bsky.social · 13/05/2025
We’re hiring a postdoc with slice patch-clamp expertise to study head direction circuits and plasticity during spatial learning. Ideal for a neurophysiologist excited to combine ex vivo and in vivo approaches. Come join us in beautiful Cambridge! 🐭🧭🧠 📝 Apply by 9 June: www.jobs.cam.ac.uk/job/51282/
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DeepLabCut @deeplabcut.bsky.social · 13/05/2025
Summer Workshop Alert‼️ The Okinawa Institute of Science and Technology, Japan organizes on July 1 a hands-on DeepLabCut workshop led by Drs. Mackenzie and Alexander Mathis. Applications are open at www.oist.jp/conference/d...
oist.jp
DeepLabCut Workshop
A one day hands-on workshop on the use of the famous DeepLabCut software to analyze videos of animal behavior, led by Drs. Mackenzie and Alexander Mathis. Participants will be helped to pre-install th...
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Matt Smear @mattsmear.bsky.social · 09/05/2025
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Yuxin Zhang @yuxinzhang.bsky.social · 01/05/2025
My PhD project is out as a preprint! We combined 2P and synchrotron X-ray to understand mouse olfactory bulb circuits, linking physiology to structure in 3 animals! doi.org/10.1101/2025... 🙌 @carlesbosch.bsky.social, @apacureanu.bsky.social, @andreas-t-schaefer.bsky.social, @esrf.fr, @crick.ac.uk
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The Transmitter @thetransmitter.bsky.social · 16/04/2025
Olfactory neuroscientists have known for a while that their stimuli stink. A new analysis illuminates the extent of the problem. By @callimcflurry.bsky.social #neuroskyence www.thetransmitter.org/olfaction/sm...
thetransmitter.org
Smell studies often use unnaturally high odor concentrations, analysis reveals
It’s time to fashion olfactory neuroscience stimuli based on odor concentrations in the wild, say study investigators Elizabeth Hong and Matt Wachowiak.
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Philip Ball @philipcball.bsky.social · 21/04/2025
I had a fantastic talk a few weeks ago with Nobel laureate Paul Nurse, head of the Crick Institute, about where biology has got to and where it's heading. Here is the first part of it. www.marginaliareviewofbooks.com/post/paul-nu...
marginaliareviewofbooks.com
Nobel Laureate, Paul Nurse, on the Future of Biology
SIR PAUL NURSE | Life is something that is able to self-assemble into a whole, behaving object. And that's what a cell is, too...
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Takaki Komiyama @takakikomiyama.bsky.social · 18/04/2025
Our new paper is out in Science. What is the synaptic plasticity rule in the brain, we asked. It turns out there are multiple, even within individual neurons. Congrats Jake! www.science.org/doi/10.1126/...
science.org
Distinct synaptic plasticity rules operate across dendritic compartments in vivo during learning
Synaptic plasticity underlies learning by modifying specific synaptic inputs to reshape neural activity and behavior. However, the rules governing which synapses will undergo different forms of plasti...
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Dinu F Albeanu @dinanthos.bsky.social · 26/03/2025
New preprint on common algorithms and evolutionary inventions that may account for apparent idiosyncratic encoding of odor concentration across species millions of years apart by taking advantage of divisive normalization: steered by Yang Shen, @arkarupbanerjee.bsky.social and Saket Navlakha. 1/3
doi.org
An evolutionarily conserved scheme for reformatting odor concentration in early olfactory circuits
Understanding how stimuli from the sensory periphery are progressively reformatted to yield useful representations is a fundamental challenge in neuroscience. In olfaction, assessing odor concentration is key for many behaviors, such as tracking and navigation. Initially, as odor concentration increases, the average response of first-order sensory neurons also increases. However, the average response of second-order neurons remains flat with increasing concentration – a transformation that is believed to help with concentration-invariant odor identification, but that seemingly discards concentration information before it could be sent to higher brain regions. By combining neural data analyses from diverse species with computational modeling, we propose strategies by which second-order neurons preserve concentration information, despite flat mean responses at the population level. We find that individual second-order neurons have diverse concentration response curves that are unique to each odorant — some neurons respond more with higher concentration and others respond less — and together this diversity generates distinct combinatorial representations for different concentrations. We show that this encoding scheme can be recapitulated using a circuit computation, called divisive normalization, and we derive sufficient conditions for this diversity to emerge. We then discuss two mechanisms (spike rate vs. timing based) by which higher order brain regions may decode odor concentration from the reformatted representations. Since vertebrate and invertebrate olfactory systems likely evolved independently, our findings suggest that evolution converged on similar algorithmic solutions despite stark differences in neural circuit architectures. Finally, in land vertebrates a parallel olfactory pathway has evolved whose second-order neurons do not exhibit such diverse response curves; rather neurons in this pathway represent concentration information in a more monotonic fashion on average, potentially allowing for easier odor localization and identification at the expense of increased energy use. ### Competing Interest Statement The authors have declared no competing interest.
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MODOLFOR @modolfor.bsky.social · 25/03/2025
Our Symposium takes place tomorrow at the Sternwarte in Göttingen. We are looking forward to exciting talks from @nawrot.bsky.social, @xenofrog.bsky.social, Lisa Scheunemann, Andre Fiala and Celine Riera. What a great start of the #NWG meeting @neurowissg.bsky.social
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Ede Rancz @ederancz.bsky.social · 25/02/2025
❗Deadline: March 1. Last chance saloon to apply for The CSHL Ion Channels in Synaptic & Neural Circuit Physiology course. meetings.cshl.edu/courses.aspx... Hands-on training in patch-clamp, Neuropixels, and optogenetics. Daily lectures and data sessions ensure you leave ready to run experiments.
meetings.cshl.edu
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Venki Murthy @neurovenki.bsky.social · 27/01/2025
Theory in neuroscience, you say? How about this preprint by @david-g-clark.bsky.social, with a couple of others you might recognize? :-) #neuroscience
biorxiv.org
Symmetries and continuous attractors in disordered neural circuits
A major challenge in neuroscience is reconciling idealized theoretical models with complex, heterogeneous experimental data. We address this challenge through the lens of continuous-attractor networks...
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Takeshi Imai @imailab.bsky.social · 27/01/2025
How does neural activity control developmental synapse elimination? Here is a new review paper from the lab: Activity-dependent synaptic competition and dendrite pruning in developing mitral cells. www.frontiersin.org/journals/neu...
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Richard Benton @bentonlab.bsky.social · 17/01/2025
New pre-print: an one-stop shop for everything you wanted to know about the fly olfactory system: www.biorxiv.org/content/10.1...
biorxiv.org
An integrated anatomical, functional and evolutionary view of the Drosophila olfactory system
The Drosophila melanogaster olfactory system is one of the most intensively studied parts of the nervous system in any animal. Composed of ~60 independent olfactory neuron classes, with several associ...
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Gabriele Uhl @uhl-lab.bsky.social · 06/01/2025
doi.org/10.1073/pnas... Olfaction in spiders. We found that the wall pore sensilla in spiders look similar from the outside to those of insects, but differ ultrastructurally in various ways. Independent evolution! 🧪
doi.org
Olfaction with legs—Spiders use wall-pore sensilla for pheromone detection | PNAS
The sense of smell is a central sensory modality of most terrestrial species. However, our knowledge of olfaction is based on vertebrates and insec...
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Dinu F Albeanu @dinanthos.bsky.social · 23/01/2025
New paper from the lab: feedback from piriform cortex to the olfactory bulb carries identity and reward contingency signals in a multimodal (odor and sound) rule-reversal task. Feedback is re-formatted within seconds and reflects changes in the perceived rules of engagement. doi.org/10.1038/s414...
doi.org
Fast updating feedback from piriform cortex to the olfactory bulb relays multimodal identity and reward contingency signals during rule-reversal - Nature Communications
Hernandez-Trejo, Ciuparu, and Garcia da Silva et al. report that the piriform-to-olfactory bulb feedback in the mouse carries multimodal identity and reward contingency signals, which are re-formatted...
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Lin Tian, PhD @lintianphd.bsky.social · 14/01/2025
Registration for the 2025 @mpfneuro.bsky.social Neurotechniques Course closes this Wednesday! Co-directed by Ryohei Yasuda & @denisejcai.bsky.social and led by an amazing team of experts, this hands-on course is a great opportunity to learn cutting-edge methods in neuroscience 🔬🧠
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Loren Looger lab @loogerl.bsky.social · 15/01/2025
Another epic announcement from the Homeworld team! Come look at Problem Statements, make a plan, and solve the world's most serious problem: greenhouse gas-driven warming and climate change. The grant process is easy, and creativity is encouraged! Spread the word!
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