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Ignacio Arganda-Carreras

@iarganda.eurosky.social
899 followers 482 following 286 posts

Bioimage analysis and computer vision enthusiast. Whenever I can, I do software too. Ikerbasque | University of the Basque Country (UPV/EHU) | DIPC | Biofisika Institute ORCID: 0000-0003-0229-5722

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Reposted by Ignacio Arganda-Carreras
Luisma Escudero @lmescu.bsky.social · 28/09/2026
Pues en este artículo que sacamos en la revista #AdvancedScience mostramos que los balones de fútbol y los embriones de mamíferos se parecen mucho. Y tú dirás… ¿y eso por qué? Pues esta vez no es por los triángulos, sino por los pentágonos! Aquí va el link: 10.1002/advs.77487 Tira del hilo...
static.klipy.com
Pentagon Kino Blue Heart Logo Animation
Alt: Pentagon Kino Blue Heart Logo Animation
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Estibaliz Gómez de Mariscal, PhD @gomez-mariscal.bsky.social · 25/09/2026
🚨I have open PhD positions in my new lab at #NIMSB🚀!! Deadline Oct-16 nimsb.unl.pt/join-us/ 🌟I'm looking for motivated candidates who are eager to join a highly multidisciplinary team and study the intracellular dynamics of cancer cell migration using advanced computational methods and microscopy👾
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Centro de Biología Molecular Severo Ochoa @cbm-csic-uam.bsky.social · 21/09/2026
🔬 ¡Nueva oferta de trabajo en el CBM! Buscamos un/a Analista de Imagen Científica para incorporarse a nuestro Servicio de Microscopía Óptica Avanzada en Madrid. 🗓️Envía tu CV hasta el 5 de octubre. 👉 Requisitos y detalles de la oferta: www.cbm.uam.es/index.php/jo...
cbm.uam.es
Scientific Image Analyst (Optical Microscopy) - Centro de Biología Molecular Severo Ochoa
About the service The Advanced Optical Microscopy Service (SMOA) at the Severo Ochoa Centre for Molecular Biology (CBM) offers advice, technical support and training in advanced optical microscopy and...
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Reposted by Ignacio Arganda-Carreras
BIST-Barcelona Institute of Science and Technology @bist.eu · 25/08/2026
🗺️ First 3D map of ovary throughout reproductive lifespan reveals it counts its own eggs A new study published in #NatureAging by @crg.eu researchers challenges the idea that ovaries are simply passive egg reservoirs @bokelab.bsky.social #BISTCommunity Learn more 👉 bist.eu/first-3d-map...
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Ignacio Arganda-Carreras @iarganda.eurosky.social · 13/08/2026
Do you need to think about something else after the amazing #eclipse experience 😎? Check our latest work with @bokelab.bsky.social, together with @danifranco93.bsky.social and using @biapyx.bsky.social, of course 🤗 @informatikaehu.eurosky.social @dipcehu.bsky.social
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Reposted by Ignacio Arganda-Carreras
Böke Lab @bokelab.bsky.social · 12/08/2026
What does an ovary actually look like as it ages—one oocyte at a time? We mapped >85,000 oocytes in >100 intact mouse ovaries, in 3D, across the reproductive lifespan. And the ovary turned out to be much more organized than we expected. 🧵 1/5 www.nature.com/articles/s43...
nature.com
Three-dimensional mapping of intact ovaries reveals the aging dynamics of the ovarian reserve - Nature Aging
The spatiotemporal dynamics of the depletion of the ovarian reserve remain incompletely understood. Combining whole-ovary imaging, AI and modeling, the authors mapped over 85,000 mouse oocytes and fou...
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Ignacio Arganda-Carreras @iarganda.eurosky.social · 24/07/2026
He dado mi opinión sobre los futuros billetes en euros. ¡Da también la tuya! surveys.ecb.europa.eu/10b/neweuro/
surveys.ecb.europa.eu
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Reposted by Ignacio Arganda-Carreras
Anna Foix @afoix.bsky.social · 09/07/2026
🚨🚨🚨 DEADLINE EXTENSION ALERT! 🚨🚨🚨 Great news 🧬💻 The submission deadline for the BioImage Computing (BIC) Workshop at @eccv.bsky.social is now July 20, 2026! We can't wait to see your latest research! 🔬👩‍💻👨‍💻 🚪 Submit: openreview.net/group?id=the... 🌐 Info: www.bioimagecomputing.com
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Reposted by Ignacio Arganda-Carreras
Daniel Franco-Barranco @danifranco93.bsky.social · 30/06/2026
🎉 Big news: our paper "Representation matters" just got accepted as a Registered Report (Stage 1) in Nature Methods! 🧬 We're building the first rigorous, preregistered benchmark of instance segmentation representations in bioimage analysis. 🧵👇 (1/3)
Examples of intermediate representations used in bottom-up instance segmentation for bioimage analysis. Shown are representative pixel- or voxel-level targets derived from instance annotations, including binary feature maps (for example, foreground, contours, centroids, and skeletons), distance-based representations (for example, horizontal/vertical offsets, radial distances, distance to boundary, and distance to center), and affinity-based representations. Here, neighbor affinities denote local connectivity predictions indicating whether adjacent pixels or voxels belong to the same object. The rows show illustrative examples from different datasets and are not intended to imply a sequential workflow or a one-to-one correspondence between representations. In the benchmarked pipelines, such intermediate
representations are subsequently converted into final object instances by downstream grouping or post-processing procedures such as watershed, clustering, or graph partitioning.
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GloBIAS @globias.bsky.social · 07/07/2026
🎉 Registration is open for the GloBIAS 2026 BioImage Analysts' Workshop! 📍 Dortmund, Germany | 🗓️ 10–13 Nov 2026 Join the BIA community to explore AI, image analysis, training, and the future of BioImage Analysis 👉 www.globias.org/activities/g... #BioImageAnalysis #AI #GloBIAS
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Daniel Franco-Barranco @danifranco93.bsky.social · 25/06/2026
🚀 Excited to share our new work in Scientific Reports! 🧠🔬 “Automated segmentation of neurons and spinal cord structures in immunofluorescence images using SpineDL” Happy to have contributed as co-first author together with Pablo Ruiz-Amezcua. 🔗https://doi.org/10.1038/s41598-026-57519-w 🧵👇
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REMOA-Spanish Network for Advanced Microscopy @remoabioimaging.bsky.social · 18/06/2026
On the road to #SPAOM2026 🚀 The call for community workshops is now open! Submit your proposal — a fantastic chance to learn, share ideas, and create together. Join us! #SPAOM2026 #Bioimaging #Lifesciences
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Virginie Uhlmann @virginieuhlmann.bsky.social · 01/06/2026
📢📢 We are hiring a Bioimage Analyst at the BioVisionCenter! 📢📢 Join our collaboration with the Flow Cytometry Facility and contribute back to the international efforts on open standards for bioimaging data! More information here, reach out if you have any question: jobs.uzh.ch/job-vacancie...
jobs.uzh.ch
UZH: Bioimage Analyst
The University of Zurich is the largest university in Switzerland and one of the most prominent in Europe. For research purposes the Biovision Center and Flow Cytometry Facility offer services to supp...
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Ignacio Arganda-Carreras @iarganda.eurosky.social · 19/05/2026
This award is such a beautiful surprise! 🤩 Tons of thanks to the @royalmicrosoc.bsky.social, the amazing #BioimageAnalysis, #Fiji, #ImageJ & #OpenSource communities, my mentors and mentees, my employers, and whoever nominated me (I still don't know how that person was 😅)!
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Beth Cimini 🔬💻📊 @bethcimini.bsky.social · 07/05/2026
The Cimini lab is hiring for both postdocs and interns! The postdoc role will cover bioimage analysis projects and educational material creation; the intern will be working on our Bilayers project for helping distribute and access deep learning tools for bioimage analysis. Click below to learn more!
forum.image.sc
Postdoctoral Associate and Data Science Intern roles - Broad Institute, Cambridge MA USA
The Broad Institute Imaging Platform (the team behind CellProfiler, Piximi, and Bilayers) is currently hiring for postdoctoral and intern roles! Postdoc role: we are looking for 1-2 candidates who ha...
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HiTZ zentroa (EHU) @hitz-zentroa.bsky.social · 23/04/2026
🚀🐑 Latxa berritu dugu! Itzulpen-modu berria, PDFekin lan egiteko aukera, interfaze berritua eta mugikorrean app moduan erabiltzeko aukera ✨ Latxa proiektu bizia da, eta etengabe hobetzen jarraituko dugu. 👉 Probatu hemen: latxa.hitz.eus #AA #Euskara #Latxa #HiTZ
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Ignacio Arganda-Carreras @iarganda.eurosky.social · 08/04/2026
🚨 Registration closing soon! Join the AIM-Net Deep Learning Summer School (2–6 June 2026, La Ràpita 🇪🇸) 🔬 Hands-on training in AI for microscopy & bioimage analysis 👩‍🔬 For PhDs & early-career researchers 💻 Lectures + practicals + project work ⏳ Apply before April 10 aim-net.net/eventos/aim-...
aim-net.net
AIM-Net · Deep Learning Summer School
Introduction to AI methods for microscopy and quantitative bioimaging The AIM-Net Summer School is a core training activity of the AIM-Net thematic network (AEI–REDES) in collaboration […]
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Reposted by Ignacio Arganda-Carreras
GdR ImaBio 🔬 @gdrimabio.bsky.social · 09/03/2026
🔬🌿Official launch of the #AGILE_project, an MSCA doctoral network funded by the European Union. #AGILE aims to train a new generation of plant scientists. Team CODED @igred.fr is looking for 15 international doctoral students. For more information and/or to apply : 👉 www.msca-agile.eu
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Institut Pasteur Education @pasteuredu.bsky.social · 24/02/2026
⚠️ 1 week left for Pasteur Course "Advanced Bioimage Analysis With AI"! 👩‍🔬💻 Intensive course (June 1-5, Paris): theory + hands-on, AI focus in bioimaging. 📍 Institut Pasteur 🗣️ English ⏰ Deadline: March 1 🔬 Beginner basics, batch scripts, interactive sessions 👉 Apply: bit.ly/4c8rFKZ
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Mr. Fanshawe @mrfanshawe.bsky.social · 13/02/2026
A ver: nos han seleccionado del programa Emplea Cultura 2026 de la fundación Santander y buscamos alguienmenor de 32 años para que trabaje con nosotras en lo de la gestión cultural en Casa Tomada a través del programa. En esta publicación de instagram contamos todo: www.instagram.com/p/DUska7fiIgg/
instagram.com
Instagram
Create an account or log in to Instagram - Share what you're into with the people who get you.
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Guillaume Jacquemet @guijacquemet.bsky.social · 06/02/2026
You still have time to apply if you are interested in joining my lab!!
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Basque Center on Cognition, Brain and Language (BCBL) @bcbl.bsky.social · 02/02/2026
🧠 Do you want to help us discover how #language works in the human #brain? At #BCBL we are always looking for volunteers of all ages to develop research projects that bring valuable results to society. +info👇 www.bcbl.eu/en/participa...
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Basque Center on Cognition, Brain and Language (BCBL) @bcbl.bsky.social · 02/02/2026
🧠 Giza garunean #hizkuntza|k nola funtzionatzen duen ezagutzen lagundu nahi diguzu? #BCBL|n beti gabiltza adin guztietako boluntarioen bila, gizarteari emaitza baliotsuak ekarriko dizkieten ikerketa-proiektuak garatzeko. info+👇 www.bcbl.eu/eu/parte-har...
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Basque Center on Cognition, Brain and Language (BCBL) @bcbl.bsky.social · 02/02/2026
🧠 ¿Quieres ayudarnos a descubrir cómo funciona el #lenguaje en el #cerebro humano? En #BCBL siempre estamos en busca de voluntarios/as de todas las edades para desarrollar proyectos de investigación que aporten resultados valiosos a la sociedad. +info👇 www.bcbl.eu/es/participa...
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BiaPy @biapyx.bsky.social · 26/12/2025
Did you miss our workshop on 💫 Halfway to I2K 2025 💫(www.i2kconference.org)? Worry no more! The video is finally out 👇 youtu.be/dFLtKHWlYdQ?... Check it out and learn about BiaPy and its latest news 🤗 with @iarganda.bsky.social and @danifranco93.bsky.social 🤩
youtu.be
BiaPy: accessible deep learning workflows
YouTube video by I2K Conference
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Jean-Yves Tinevez @jytinevez.bsky.social · 15/12/2025
I was invited by @focalplane.bsky.social to write a short description about it: focalplane.biologists.com/2025/12/12/a...
focalplane.biologists.com
A new version of TrackMate with improved integration of key AI algorithms and track edition improvements - FocalPlane
A new version of TrackMate with improved integration of key AI algorithms and track edition improvements -
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Ignacio Arganda-Carreras @iarganda.eurosky.social · 27/11/2025
Awesome place, team and group leader! 🤩 I can tell from my own experience 🤗
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Jean-Yves Tinevez @jytinevez.bsky.social · 20/11/2025
We just released a new major version of TrackMate (v8), the cell and organelle tracking plugin of Fiji. It ships many new features, detailed below, but that are articulated around the following:
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Ignacio Arganda-Carreras @iarganda.eurosky.social · 14/10/2025
❗The official application call for our PhD position has already started: www.ehu.eus/es/web/ikerk... Since most of the application is in either Spanish or Basque, I have prepared a document in English 👇 drive.google.com/file/d/1q0mH... Looking forward to receiving applications! 🤩
drive.google.com
Summary of the FPI 2025 PhD Call at UPV_EHU.pdf
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Jean-Yves Tinevez @jytinevez.bsky.social · 13/10/2025
Hi all. This is the recording of the online seminar I gave following the kind invitation of #GLOBIAS. I share what we have learned delivering #BioimageAnalysis services in the IAH core facility of the @institutpasteur.bsky.social research.pasteur.fr/en/team/imag... ⬇️
research.pasteur.fr
Image Analysis Hub - Research
The Image Analysis Hub is an open-access / equal-access core facility committed to sharing bioimage analysis services expertise with the scientific community. What we do The IAH works by collaborating...
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Agustin Corbat @acorbat.bsky.social · 09/10/2025
¡Atención comunidad científica de Latam! 🌎🔬 Desde Latin American Bioimaging (@latambioimaging.bsky.social) organizamos un evento de networking único para conectar, colaborar y crecer. ¿Sos estudiante, estás en tu doctorado o ya investigás? ¡Esto es para vos! Abro hilo 👇
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Ignacio Arganda-Carreras @iarganda.eurosky.social · 08/10/2025
✨ Fantastic opportunity for people looking for image facility jobs! What better than working with the awesome @jytinevez.bsky.social in Paris? 🤩 #bioimaging #bioimageanalysis #facilityjob 👇
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Ignacio Arganda-Carreras @iarganda.eurosky.social · 07/10/2025
👇 The official call opening has been delayed ⌛ by the university to the end of this week. Sorry about that, I'll keep you posted! 🙏
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Ignacio Arganda-Carreras @iarganda.eurosky.social · 30/09/2025
📣 We’re hiring, please RT! Fully funded 4-year PhD position in our CVPD group at @informatikaehu.bsky.social! Research at the intersection of AI, deep learning & bioimage analysis. 🧠🔬 📅 Applications open Oct 6 (deadline: ~Oct 27) 📍 San Sebastian, Spain. 👉 cvpd.github.io/post/2025-09...
cvpd.github.io
📢 Open 4-year PhD Position in Deep Learning for Bioimage Analysis! | CVPD Research group
The Computer Vision and Pattern Discovery (CVPD) group at the University of the Basque Country (UPV/EHU) is offering a fully funded 4-year PhD position within the recently awarded project TOSBI: Towar...
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Katedra @katedra.eus · 20/09/2025
Resulta que en #NaukasBilbao25 hasta las moléculas de agua bailan, con @elirezabal.bsky.social
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Ignacio Arganda-Carreras @iarganda.eurosky.social · 20/09/2025
¿Alguien en Bilbao hoy (sábado 20 de septiembre)? No perderse la charla de la maravillosa @elirezabal.bsky.social 😍 (@theochemehu.bsky.social, @dipcehu.bsky.social) en @naukas.bsky.social #NAUKAS2025 ⏰11:30 a 11:40 – 💫Elixabete Rezabal💫 – ¿Hueles vibraciones? 👃📳 naukas.com/2025/09/12/p...
naukas.com
Programa definitivo de Naukas Bilbao 15º Aniversario - Naukas
Programa definitivo Naukas Bilbao 15 Aniversario (19 al 21 septiembre 2025)
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Nick Lloyd @spaincivilwartours.bsky.social · 19/09/2025
First page of 18th century Basque-Icelandic dictionary. A Basque-Icelandic pidgin was spoken between locals and Basque whalers from ~1600 including the well-known expression "Fenicha for ju" meaning F**k you! en.m.wikipedia.org/wiki/Basque%...
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Ignacio Arganda-Carreras @iarganda.eurosky.social · 19/09/2025
Thanks a lot, @ahklemm.bsky.social! It's tough to post on social networks while presenting 😜 I hope the students of the @embo.org course on Advanced methods in #BioimageAnalysis liked @biapyx.bsky.social 🤗
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Ignacio Arganda-Carreras @iarganda.eurosky.social · 19/09/2025
And here we are on Day 6️⃣ of our @embo.org course on "Advanced methods in bioimage analysis"! 🔬🖥️📊 @events.embl.org Anna Kreshuk is already shining at the stage answering questions about Practical session 6: "AI for Life Sciences" 🤖🧬🧪, especially about @ilastik-team.bsky.social ✊🖌️
Classroom view of the Practical session 6: "AI for Life Sciences", on Day 6 of EMBO course on Advanced methods in bioimage analysis. Anna Kreshuk is already addressing the crowd of students, while they seat on their computer posts.Classroom view of the Practical session 6: "AI for Life Sciences", on Day 6 of EMBO course on Advanced methods in bioimage analysis. Anna Kreshuk answers the questions of the students, while she holds a cup of tea.Panoramic view of the classroom during Practical session 6: "AI for Life Sciences", on Day 6 of EMBO course on Advanced methods in bioimage analysis. Anna Kreshuk answers the questions of the students from the stage.
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Ignacio Arganda-Carreras @iarganda.eurosky.social · 18/09/2025
Day 5️⃣ of our @embo.org course on "Advanced methods in bioimage analysis"! 🔬🖥️📊 @embl.org @tischi.bsky.social is already launching 🚀 Lecture 4: Introduction to working with OME-Zarr (Tutorial) @openmicroscopy.org @zarr.dev
Christian Tischer addresses the online participants of the EMBO Advanced methods in biomage analysis course before starting his tutorial on OME-Zarr.Christian Tischer gets prepared to start his tutorial on OME-Zarr in front a full classroom.Christian Tischer gives the first intructions to the onsite and the online participants of the EMBO Advanced methods in biomage analysis course for his tutorial on OME-Zarr.
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Amaia Cipitria @amaiacipitria.bsky.social · 17/09/2025
We are hiring, please RT! Lab manager in the #HEALIKICK #H2020 #HorizonEU project, responsible for biological sample processing and general lab aspects. Biotechnology, Biomedical engineering, Biomedicine or similar. @biogipuzkoa @Ikerbasque. More info & apply until 15/10 👉https://bit.ly/46tSKUl
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Ignacio Arganda-Carreras @iarganda.eurosky.social · 17/09/2025
And here we go again with Day 4️⃣ of the @embo.org course on "Advanced methods in bioimage analysis"! 🔬🖥️📊 We just started "Pratical session 5: Spatial statistics and omics integration" with @brittavelten.bsky.social and her team 💪 from @uniheidelberg.bsky.social ...
Anna Klemm presents Britta Velten (from Heidelberg University) before Practical session 5 (Spatial statistics and omics integration) in the presence of Nikolai Köhler and Wangjun Hu.Britta Velten on stage addressing the course students.Panoramic view of the classroom full of students attending the practical session by Britta Velten, Nikolai Köhler and Wangjun Hu.
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Robert Haase @haesleinhuepf.bsky.social · 16/09/2025
I gave two seminars at @embl.org Heidelberg these days: One about using LLMs via #biabob for #BioImageAnalysis and one about how LLMs impact BioImage #DataScience Thanks EMBL for having me! Materials #openaccess 🧑‍🏫🖥️🔓 zenodo.org/records/1705... zenodo.org/records/1710... scads.github.io/llm-bia-2025
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Ignacio Arganda-Carreras @iarganda.eurosky.social · 16/09/2025
Day 3️⃣ of our @embo.org course on "Advanced methods in bioimage analysis" at @embl.org with "Practical session 3: Tracking" 🔬🦠🔀. @jytinevez.bsky.social is already shining at the stage! 🕺🪩. Important update: #TrackMate v8 is coming! 🤗
Jean-Yves Tinevez addresses the students of the EMBO course to present "Practical session 3: Tracking".Jean-Yves Tinevez shows an slide about "Scientific tools to track cells and organelles", including TrackMate, MaMuT and Mastodon software.Jean-Yves Tinevez shows an slide about TrackMate v8, with bacteria images already segmented.Jean-Yves Tinevez shows an slide entitled "A collection of tracking components at your fingertips", showing a long list of segmentation software including MorphoLibJ, Trainable Weka Segmentation, Ilastik, StarDist, cellpose, and more.
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Ignacio Arganda-Carreras @iarganda.eurosky.social · 15/09/2025
Day 2️⃣ of our @embo.org course on "Advanced methods in bioimage analysis" 🔬🖥️🧫 at @embl.org with "Practical session 1: Image Analysis workflow and data management" 💽📊 with the awesome @virginieuhlmann.bsky.social 🤩 Let's the fun start! 💫
Full room of students for the first practical session of day #2 at the Advanced methods in bioimage analysis EMBO course at EMBL.Christian Tischer gives instructions to students in the classroom of the second day of the Advanced methods in bioimage analysis EMBO course at EMBL.List of students and training positions for the Advanced methods in bioimage analysis EMBO course.Virginie Uhlmann addresses the students on the second day of the Advanced methods in bioimage analysis EMBO course at EMBL.
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EMBL @embl.org · 11/09/2025
Join EMBL AI! We have ambitious plans to transform life sciences research through AI. Interested in using ML/AI to solve complex interdisciplinary challenges? We’re looking for two senior leaders based at EMBL Heidelberg👇
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Guillaume Jacquemet @guijacquemet.bsky.social · 10/09/2025
Come and work with us 5-year position available for a University Researcher in Bioimaging 1.11.2025-31.12.2030 abo.rekrytointi.com/paikat/index...
abo.rekrytointi.com
University Researcher in Bioimaging / Universitetsforskare med inriktning bioimaging, 1.11.2025-31.12.2030
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Evangelos Kazakos @ekazakos.bsky.social · 31/08/2025
Hi friends! I made a computer vision feed that was missing on Bluesky. You can find it here: bsky.app/profile/did:.... Pin it to your profile if you like it. 😉 It filters relevant posts based on regular expressions. But to make sure that your post is included in the feed, add the #skyvision tag.
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Ignacio Arganda-Carreras @iarganda.eurosky.social · 16/07/2025
In the heat of the summer... jump into @biapyx.bsky.social 's boat! ⛴️ 😜
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