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BiaPy @biapyx.bsky.social · 26/12/2025

Did you miss our workshop on 💫 Halfway to I2K 2025 💫(www.i2kconference.org)? Worry no more! The video is finally out 👇 youtu.be/dFLtKHWlYdQ?... Check it out and learn about BiaPy and its latest news 🤗 with @iarganda.bsky.social and @danifranco93.bsky.social 🤩

youtu.be

BiaPy: accessible deep learning workflows

YouTube video by I2K Conference

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BiaPy @biapyx.bsky.social · 20/10/2025

🚀 Big news: BiaPy meets @galaxyproject.bsky.social! ⛴️🤝🌌 You can now run BiaPy directly inside Galaxy, making deep learning for bioimage analysis easier, reproducible & accessible to everyone. 👉 imaging.usegalaxy.eu?tool_id=tool... #BioImageAnalysis #GalaxyProject #AI4Life #Bioimaging

imaging.usegalaxy.eu

Galaxy

Galaxy is a community-driven web-based analysis platform for life science research.

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BiaPy @biapyx.bsky.social · 15/07/2025

⛴️ BiaPy just reached version 3.6.1 💫 (latest release)! github.com/BiaPyX/BiaPy... ➡️ v3.6.1 came right after (the more dense) v3.6.0 to fix some small bugs 🐞 Let me tell you a bit about what's new 👇

github.com

Release Version 3.6.1 · BiaPyX/BiaPy

Minor: Disable painting matching instances by default as it takes a lot of time, i.e. TEST.MATCHING_STATS_THS_COLORED_IMG to [] (#135) Refine DA notebook Update notebooks to install BiaPy v3.6.0 ...

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Reposted by BiaPy

Mapping Ignorance @mappingignorance.org · 16/05/2025

By democratizing bioimage analysis, BiaPy is paving the way for faster, more inclusive scientific breakthroughs, bringing us closer to understanding the building blocks of life. mappingignorance.org/2025/05/15/bia…

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BiaPy @biapyx.bsky.social · 15/05/2025

So happy to see #BiaPy in action! 🤗 Thanks a lot @jwpylvanainen.bsky.social 🤩

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BiaPy @biapyx.bsky.social · 29/04/2025

🚀 Excited to share that our work on BiaPy has been published today in Nature Methods! BiaPy makes deep learning accessible for bioimage analysis, from small datasets to terabyte-scale 3D images. 👇 (1/7) 🔗 www.nature.com/articles/s41... #DeepLearning #BioimageAnalysis #OpenSource #BiaPy

nature.com

BiaPy: accessible deep learning on bioimages - Nature Methods

Nature Methods - BiaPy: accessible deep learning on bioimages

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BiaPy @biapyx.bsky.social · 28/03/2025

🆕 Did you experience troubles ⚠️ while installing BiaPy in our Google Colab notebooks? We did too! This is due to some updates in the default libraries of Colab. As a temporary solution, we have now included a new cell in the notebooks to reinstall the conflicting libraries 👇

Screenshot of BiaPy notebook showing the installation section. The first part of section reads "Play to reinstall Colab libraries so they are compatible wiht BiaPy. ⚠️ Wait until this cell is fully executed to run the next one ⚠️ This will make the notebook restart. Do not worry and continue executing the next cell once this one is finished."

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BiaPy @biapyx.bsky.social · 25/01/2025

🆕 Now that the bugs have been fixed 🙃, we have a new video 📹 tutorial on how to import pretrained models from the BioImage Model Zoo 🦒 into your #BiaPy workflow using our friendly GUI 🖥️, by @iarganda.bsky.social: youtu.be/Zq50Ew1s8ag

youtu.be

BiaPy GUI: Import models from the BioImage Model Zoo

YouTube video by BiaPy

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BiaPy @biapyx.bsky.social · 23/01/2025

👋 Hi everybody! We have a new release of ⛴️ BiaPy's GUI 🖥️ (v1.1.5) with plenty of new features ✨ and bug 🐞 fixes! Let me show you some of the novelties 👇 github.com/BiaPyX/BiaPy...

github.com

Release Version 1.1.5 · BiaPyX/BiaPy-GUI

Major: Move to PySide6 Add splash screen Enforce the light theme with pyqtdarktheme to prevent the automatic macOS white font change Add initial GUI tour window Update container download process: ...

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BiaPy @biapyx.bsky.social · 27/11/2024

More videos! 📽️ BiaPy's code-free notebooks 📓 are easy to use in either Google Colab ☁️ or locally 🏠. Here you have a full walkthrough video describing how to navigate and use BiaPy's notebooks by @iarganda.bsky.social Enjoy and let us know your thoughts! 🙏 youtu.be/KEqfio-EnYw?...

youtu.be

BiaPy Notebooks walkthrough

YouTube video by BiaPy

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BiaPy @biapyx.bsky.social · 22/11/2024

Did you like what you heard about BiaPy at #SPAOM2024? 🔬 Are you interested in giving its GUI a try? 🖥️🧙 Search no more! Here you have our walkthrough video tutorial on BiaPy's GUI by @danifranco93.bsky.social 🤗 Let us know your thoughts, all feedback is welcome! 🤩 youtu.be/vY7aBh5FUNk?...

youtu.be

BiaPy graphical user interface walkthrough

YouTube video by BiaPy

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Reposted by BiaPy

Ignacio Arganda-Carreras @iarganda.eurosky.social · 20/11/2024

and 4️⃣, on Friday at 10:45am (Sala Toledo), I will be presenting the history and current state of @biapyx.bsky.social with my talk "BiaPy: Bioimage Analysis workflows for all audiences", see you all there! 😊 #SPAOM2024

Title slide of the presentation by Ignacio Arganda-Carreras at SPAOM 2024, entitled "BiaPy: Bioimage Analysis workflows for all audiences".

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Reposted by BiaPy

Ignacio Arganda-Carreras @iarganda.eurosky.social · 20/11/2024

3️⃣ Tomorrow after lunch (16.15h – 17.15h, Workshop rooms), @arratemunoz.bsky.social, Lenka Backová, @aaitorg.bsky.social and I will give a community workshop on @biapyx.bsky.social, our deep learning library and application for #BioImageAnalysis #SPAOM2024

Outline of the community workshop on BiaPy at the SPAOM 2024. It reads:
16:15-17:15:
Introduction to BiaPy
What is a workflow
Deep learning recap
What is (and what’s not) BiaPy
BiaPy workflows
Use case: 2D instance segmentation
Top-down vs Bottom-up approaches
Demo with BiaPy notebook
Helpers:
Lenka Backová
Aitor González-Marfil
Arrate Muñoz-Barrutia

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BiaPy @biapyx.bsky.social · 19/11/2024

BiaPy ⛴️ will be at SPAOM24 in Toledo twice! We'll lead a community workshop (Day 2) and @iarganda.bsky.social will give an invited talk (Day 3) about our library and application ☺️ See you all there! #SPAOM2024

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BiaPy @biapyx.bsky.social · 19/11/2024

Hello #BioImageAnalysis world! Is the sky bluer here? 🦋

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