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Emmy Li

@emmyli.bsky.social
61 followers 42 following 12 posts

Postdoctoral Fellow @ Stanley Qi Lab Extreme dog lover. Fan of both land and marine wildlife. For dog pictures - @doodlycharlie on instagram

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Reposted by Emmy Li
Martin Kampmann @kampmann.bsky.social · 10/06/2025
Stand up for science - stand up for the NIH! I just signed the support letter for the #BethesdaDeclaration. Please consider signing as well: www.standupforscience.net/bethesda-dec...
standupforscience.net
Bethesda Declaration — STAND UP FOR SCIENCE
Support NIH Staff Now!
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Sarafan ChEM-H @stanford-chemh.bsky.social · 10/06/2025
New CRISPR technology developed by @stanleyqilab.bsky.social‬, Mengting Han & team could pave the way for potential treatments for neurodegenerative diseases like ALS and spinal muscular dystrophy:
news.stanford.edu
New CRISPR technology could help repair damaged neurons
Stanford researchers have developed a technology that delivers RNA to damaged neurons and stimulates regrowth – paving the way for potential treatments targeting neurodegenerative diseases like ALS…
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Stanley Qi @stanleyqilab.bsky.social · 26/05/2025
www.nature.com/articles/s41...
nature.com
Programmable control of spatial transcriptome in live cells and neurons - Nature
CRISPR-TO, a system for programmable control of spatial localization of cellular RNAs, is presented and enables functional investigation of endogenous RNA localization in diverse living cells.
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Stanley Qi @stanleyqilab.bsky.social · 26/05/2025
Thrilled to share our paper in @nature.com led by @MengtingHan123 on CRISPR-TO technology, which paves the way for treatments for neurodegenerative diseases by precisely delivering therapeutic RNA to the damaged sites. A 🧵@Stanford_ChEMH, @bioe_stanford, @Stanford
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Sarafan ChEM-H @stanford-chemh.bsky.social · 23/05/2025
Institute Scholar Stanley Qi @stanleyqilab.bsky.social discusses the importance of scientific research and his long-term goal of using the genetic engineering technologies developed in his lab to address unmet medical needs in diseases like cancer and Alzheimer’s:
news.stanford.edu
‘For many people, waiting is not an option’
Stanford bioengineer Stanley Qi is developing advanced gene-editing tools to treat life-threatening diseases and slow the onset of neurological aging.
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Stanford University @stanford.edu · 20/05/2025
“Research is like a chemical reaction – it takes time to reach completion. If we ever slow down in training the next generation of scientists, we risk falling behind other competitors in the world – even if we have the better solution.” #ResearchMatters
news.stanford.edu
‘For many people, waiting is not an option’
Stanford bioengineer Stanley Qi is developing advanced gene-editing tools to treat life-threatening diseases and slow the onset of neurological aging.
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Tommy Vierbuchen @tvierbuchen.bsky.social · 13/05/2025
Excited to share our latest manuscript, a collaboration with @justinperryphd.bsky.social led by Weill Cornell Neuroscience PhD student @annbaako.bsky.social. Ann developed a new, improved mouse PSC model for studying tissue-resident macrophage differentiation. www.biorxiv.org/content/10.1...
biorxiv.org
Modeling tissue-resident macrophage development from mouse pluripotent stem cells
Tissue-resident macrophages (TRMs) are innate immune cells that participate in tissue development, homeostasis, and immune surveillance. Extensive efforts have been made to recapitulate TRM developmen...
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Martin Kampmann @kampmann.bsky.social · 20/05/2025
www.alz.org/news/2025/ke...
alz.org
Contrary to Clear, Verifiable Facts, Secretary Kennedy Continues to Repeat Harmful Myths About Alzheimer’s and Dementia Research
The Alzheimer's Association calls on HHS Secretary Kennedy to stop dangerous fabrications about the state of Alzheimer’s and dementia research.
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BrunetLab @brunetlab.bsky.social · 19/05/2025
www.harvard.edu
harvard.edu
Harvard University
Harvard University is devoted to excellence in teaching, learning, and research, and to developing leaders who make a difference globally.
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Scott Delaney @scott-delaney.bsky.social · 19/05/2025
Grant freezes versus terminations feel different, but they have the same practical effect. We should start treating freezes as terminations, both of which can be undone by HHS / NIH whenever they want—or by court order if they refuse. They’re all illegal.
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Rafeeque Mavoor @rafeequemavoor.bsky.social · 13/05/2025
🧵5 Top Free Alternatives to BioRender for Scientific Illustrations! These five websites offer free scientific illustrations for biologists. Great for presentations, research papers and other research communication needs. Save and share the post!
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Noam Teyssier @noamteyssier.bsky.social · 02/05/2025
No bottlenecks with binseq... github.com/ArcInstitute...
github.com
GitHub - ArcInstitute/binseq: A high efficiency binary format for sequencing data
A high efficiency binary format for sequencing data - ArcInstitute/binseq
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Susanne Rust @susrust.bsky.social · 11/05/2025
LA trash haulers are bringing their loads up to the Antelope Valley and dumping it. I saw a river canyon filled -- 30 feet deep and about 60 acres in area -- of solid trash. www.latimes.com/science/stor...
latimes.com
Antelope Valley residents say they are fed up with rampant dumping, official inaction
Thousands of tons of trash are being dumped at unauthorized waste sites across the Antelope Valley, lawsuits claim. Authorities say they are aware but have done little to stop it.
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Michael Ward @michael-e-ward.bsky.social · 21/04/2025
www.biorxiv.org/content/10.1...
biorxiv.org
Genome-wide mapping of mesoscale neuronal RNA organization and condensation
Subcellular RNA organization can affect critical cellular functions. However, our understanding of RNA microenvironments, particularly biomolecular condensates, remains limited, largely due to a lack ...
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Elena Grossi @elenagr.bsky.social · 21/04/2025
🎉 Excited to share my postdoc work in the Bernstein lab now online @cp-molcell.bsky.social! 🔎We explored the unique functions of the SWI/SNF PBAF complex and its relationship with TFs, and unveiled a PBAF/REST-controlled neuronal-like signature with potential implications in #melanoma brain mets🧬
cell.com
The SWI/SNF PBAF complex facilitates REST occupancy at repressive chromatin
By mapping SWI/SNF complex subfamilies in the melanocytic lineage, Grossi and Nguyen et al. find that PBAF-only sites harbor PRC1/2 modifications and the repressive transcription factor REST. PBAF is ...
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Golden State Warriors @warriorsofficial.bsky.social · 21/04/2025
Game 1, WON.
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Jesse Engreitz @jengreitz.bsky.social · 17/04/2025
Our latest work now online in Cell: Rewriting regulatory DNA to dissect and reprogram gene expression Our new method (Variant-EFFECTS) uses high-throughput prime editing + flow sorting + sequencing to precisely measure effects of noncoding variants on gene expression Thread 👇
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Takeshi Uenaka @tuenaka.bsky.social · 15/04/2025
Losing sleep over #iPSC transgene silencing after differentiation? Same here — too many times😭 So we built a PiggyBac construct that resists silencing. Expression stays ON, even after differentiation. Our #preprint is out👇 🔗 www.biorxiv.org/content/10.1... Supported by @cziscience.bsky.social
biorxiv.org
Prevention of Transgene Silencing During Human Pluripotent Stem Cell Differentiation
While high and stable transgene expression can be achieved in undifferentiated pluripotent stem cells, conventional transgene expression systems are often silenced upon differentiation. Silencing occu...
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yanyuzhu.bsky.social @yanyuzhu.bsky.social · 19/04/2025
www.cell.com/cell/fulltex...
cell.com
High-resolution dynamic imaging of chromatin DNA communication using Oligo-LiveFISH
Oligo-LiveFISH is an approach that can track diverse genomic loci at high spatial (20 nm) and temporal (50 ms) resolution and can work in diverse cell types, including primary cells. Combined with sup...
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yanyuzhu.bsky.social @yanyuzhu.bsky.social · 19/04/2025
Glad to share our paper, in collaboration with Prof W.E. Moerner lab and Prof. Andrew Spakowitz lab on developing a high-resolution DNA imaging technology Oligo-LiveFISH, which is online in Cell this week.
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Martin Kampmann @kampmann.bsky.social · 16/04/2025
Silencing of transgenes during iPSC differentiation is a frequent problem. 🧬🫢 Check out the piggyBac system below, which has resisted silencing in many protocols across many labs. 💪 Excited that our lab could contribute to this team effort led by @tuenaka.bsky.social & Marius Wernig!
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Stanley Qi @stanleyqilab.bsky.social · 17/04/2025
Thrilled to share our paper, led by Dr. Yanyu Zhu @yanyuzhu.bsky.social in collaboration with Prof. W.E. Moerner and Prof. Andrew J. Spakowitz, on developing Oligo-LiveFISH technology, in Cell @cellcellpress.bsky.social. A🧵 @stanford-chemh.bsky.social @bioe-stanford.bsky.social
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Noam Teyssier @noamteyssier.bsky.social · 15/04/2025
I'm excited to release what I've been cooking up the past few months at @arcinstitute.org BINSEQ is a family of binary file formats for sequencing data built with paired records and parallel processing in mind with big performance gains (2x-40x) over gzip-fastq with similar storage
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Senator Scott Wiener @scottwiener.bsky.social · 10/04/2025
They’re destroying federal science capacity & California needs to step up & expand science capacity at the state level. I introduced SB 829 to create the California Institute for Scientific Research & authorize the State of California to produce vaccines. It just passed the Senate Health Committee.
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Senator Scott Wiener @scottwiener.bsky.social · 01/04/2025
As Trump & Musk tear down our federal science agencies & jeopardize U.S. global science leadership, CA needs to step up. I introduced legislation (SB 829) to create the California Institute for Scientific Research & solidify CA’s global science leadership in the absence of federal leadership.🧵
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Carolyn Bertozzi @carolynbertozzi.bskyverified.social · 28/03/2025
Now we’re finally talking! www.politico.com/news/2025/03...
politico.com
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Nature Portfolio @natureportfolio.nature.com · 28/03/2025
Women are twice as likely to develop Alzheimer’s disease as men. A feature in Nature Medicine reports how the changes to the female brain during menopause, along with social and cultural factors, might affect disease risk. #medsky #alzsky 🧪
go.nature.com
Women twice as likely to develop Alzheimer's disease as men - but scientists do not know why - Nature Medicine
Changes to the female brain during menopause, together with social and cultural factors, might affect disease risk.
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Susanne Rust @susrust.bsky.social · 22/03/2025
Despite @governor.ca.gov 's past concern about #plastic, #styrofoam can still be purchased in stores and online throughout CA. It was banned on Jan. 1. But the gov's office still has not acknowledged it, leaving some stores and producers confused. 🤷‍♀️ #SB54 www.latimes.com/environment/...
latimes.com
California banned polystyrene. So why is it still on store shelves?
Expanded polystyrene foam, the white fluffy plastic in styrofoam, was banned in food service ware on Jan. 1. But shoppers in CA say its still on the shelves.
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Arjun Raj @arjunraj.bsky.social · 20/03/2025
I miss when the biggest controversy about mRNA was whether it correlated with protein or not.
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xinyi-chen.bsky.social @xinyi-chen.bsky.social · 20/03/2025
Huge thanks to all co-authors and our funding support!
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Stanley Qi @stanleyqilab.bsky.social · 20/03/2025
Thrilled to share our preprint led by @xinyi-chen.bsky.social on programmable molecule delivery via engineered trogocytosis called TRANSFER! a 🧵 @stanford-chemh.bsky.social @bioe-stanford.bsky.social
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James Fraser @fraserlab.com · 16/03/2025
Since @stephanieaw.bsky.social left the lab to start her group at Vanderbilt, we've been talking regularly on the ups and downs of academic science. We started recording... The Tortured Proteins Department open.spotify.com/show/10PHVou... (science with a small dose of running and Taylor Swift)
open.spotify.com
The Tortured Proteins Department
Podcast · Stephanie Wankowicz · A deep dive into scientific discovery and the process of doing science, hosted by Stephanie Wankowicz and James Fraser.
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Polly Fordyce @pollyfordyce.bsky.social · 15/03/2025
These cuts are ruining people’s careers. This is not efficiency - capricious changes to funding damage science for generations. www.nature.com/articles/d41...
nature.com
‘My career is over’: Columbia University scientists hit hard by Trump team’s cuts
The US government has begun slashing US$400 million in research grants at Columbia University over pro-Palestinian campus protests.
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drmaligator.medsky.social @drmaligator.medsky.social · 14/03/2025
#US Working #Canines are the latest victims in the Elon/Trump dumpster fire “ALL requests for everything," for the pups, including "vet visits, kenneling, dog food, etc" have been "put on hold until we receive guidance” These #dogs save lives. There needs can not just be “put on hold”
futurism.com
Elon Reportedly Orders Government to Stop Feeding the Bomb-Sniffing Dogs
As Elon Musk's DOGE continues to plunder the federal government, even the TSA's bomb-sniffing K9 units aren't safe.
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Polly Fordyce @pollyfordyce.bsky.social · 14/03/2025
This is a super clear and helpful article explaining why the 15% indirect cost rate is unfair, hurts science, and does NOT increase $ for research: www.science.org/doi/10.1126/...
science.org
Is flat 15% fair?
An NIH funding policy is misguided and damaging
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Tommy Vierbuchen @tvierbuchen.bsky.social · 13/03/2025
Our collaborative project with Matthias Stadtfeld and Jason Mezey labs has now been published. We examined how genetic variation impacts regulation of DNA methylation at the control regions of imprinted genes in naive pluripotent stem cells. www.cell.com/stem-cell-re...
cell.com
Genetic variation modulates susceptibility to aberrant DNA hypomethylation and imprint deregulation in naive pluripotent stem cells
Pluripotent stem cells are susceptible to acquiring detrimental epigenetic abnormalities, posing a hurdle to their safe use in biomedical applications. Using pluripotent cells with defined genetic backgrounds, Stadtfeld and colleagues show that genetic variation is a major driver of epigenome stability and identify candidate regulators. These findings will enable novel approaches to stabilize the epigenome of pluripotent cells in culture.
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Susanne Rust @susrust.bsky.social · 13/03/2025
🚨🚨 Concerning genetic mutation found in #H5N1 #BirdFlu dairy cows -- likely 4 herds in San Bernardino County: www.latimes.com/environment/...
latimes.com
Bird flu-infected San Bernardino dairy cows may have concerning new mutation
A new H5N1 bird flu mutation has appeared in a cluster of infected dairy cows. It's a genetic change that scientists say could not only make the virus more lethal, but increase its spread between mamm...
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Stephen Floor @snf.bsky.social · 12/03/2025
note this is a log scale - five logs, 10^5, a 100000 fold decrease in the measles death rate thanks to vaccination. it’s hard to understand why anyone would undermine such a successful vaccination program absent equally compelling data, which certainly doesn’t exist
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Susanne Rust @susrust.bsky.social · 11/03/2025
USDA finally added the #H5N1 #BirdFlu infected herds I'd heard about (2 weeks ago) to its list, bringing CA's total to 754; 983 across 17 states. Meanwhile domestic cats are getting pummeled -- APHIS' list shows last 10 entries were all cats.
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Martin Kampmann @kampmann.bsky.social · 06/03/2025
Excited for our iAssembloid work, led by @emmyli.bsky.social to be featured on the cover of today's issue of @cp-neuron.bsky.social
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Martin Kampmann @kampmann.bsky.social · 24/01/2025
Thank you Alzforum for featuring our work! CRISPRi-based screens in iAssembloids to elucidate neuron-glia interactions - project led by @emmyli.bsky.social www.alzforum.org/news/researc...
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Rosalie Lawrence @rosalielawrence.bsky.social · 13/11/2024
The Lawrence Lab website (lawrence-lab.org) is live and we are hiring for our launch in Jan 2025! We combine high resolution structure 🔬 and cell biology 🧪🧫 approaches to define mechanisms of stress response signaling in health and disease. Live postings below--Please RT and send to recent grads!
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Indigo V. L. Rose @ivlrose.bsky.social · 10/01/2025
Spending a minute today admiring my favorite spiky swirly cells (hiPSC-derived iAstrocytes, serum-free, in bi-polar process-bearing phase). One day I will make this into a Starry Night-esque painting. 🧪 🧠 #neuroskyence
Light micrograph image of human iPSC-derived astrocytes in culture. Scale bar in bottom left reads 530 µm.
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Martin Kampmann @kampmann.bsky.social · 14/01/2025
Our latest paper, led by Emmy Li, is out on Neuron today: CRISPRi-based screens in iAssembloids to elucidate neuron-glia interactions www.cell.com/neuron/fullt...
cell.com
CRISPRi-based screens in iAssembloids to elucidate neuron-glia interactions
Using a 3D co-culture system of iPSC-derived neurons and glia, termed iAssembloids, combined with CRISPRi-based screening, Li et al. investigate the effect of glial cells on neuronal activity and surv...
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SamelsonLab@UCLA @samelsonlab.bsky.social · 25/11/2024
We are opening in January of 2025 at UCLA: SamelsonLab.org We combined classic biophysical techniques with systems genetics in iPSC-derived cell types to explore how proteins aggregate and how cells control protein aggregation. Multiple positions are open: SamelsonLab.org/join/ Join us!!
media.tenor.com
a young man wearing a blue ucla shirt
ALT: a young man wearing a blue ucla shirt
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asamelson @asamelson.bsky.social · 28/10/2024
Our updated preprint is live! www.biorxiv.org/content/10.1... @kampmann.bsky.social We add new data: 1. A new CRL5 complex that targets tau for degradation 2. CUL5 as a marker of vulnerability in Alzheimer's Disease 3. Oxidative stress-derived tau fragments change in vitro tau aggregation
biorxiv.org
CRISPR screens in iPSC-derived neurons reveal principles of tau proteostasis
Aggregation of the protein tau defines tauopathies, which include Alzheimer's disease and frontotemporal dementia. Specific neuronal subtypes are selectively vulnerable to tau aggregation and subseque...
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