Zikang (Dennis) Huang @dennishuang.bsky.social · 26/09/2026I’m happy to announce that I will be defending on Oct 26th at 9a EST! Title: Mining, understanding, and engineering natural protein receptors of light and temperature for dynamic signal integration. Pls DM me for address and zoom if you are interested! 020
Zikang (Dennis) Huang @dennishuang.bsky.social · 27/08/2026www.biorxiv.org/content/10.6... Nice work tracing scRNA and Protein changes questioning our view of central dogma: do RNAs always lead the dynamic changes in proteins abundance?biorxiv.org 010
Reposted by Zikang (Dennis) HuangLukasz Bugaj @bugajlab.bsky.social · 21/07/2026A bit late but…Tenured! Immense gratitude for those who got us here. Firstly the students/postdocs (too many to list!) who took a chance on an unproven lab and were unafraid to pursue some strange new ideas. I couldn't have predicted our path, and I couldn’t be more excited for what's next. 6214
Reposted by Zikang (Dennis) HuangAdrian Woolfson @adrianwoolfson.bsky.social · 06/08/2026share.google/HyJKOgEByxOd...share.googleAI-designed viral genomesThe generation of functional viral genomes has urgent biosafety and biosecurity implications 001
Reposted by Zikang (Dennis) HuangBeatrice Ramm @beatriceramm.bsky.social · 30/07/2026A minimal lipid kinase/phosphatase system, two effector proteins from Legionella pneumophila, self-organizes together with its lipid substrates (PI/PI3P) into dynamic patterns on membranes. Check out our preprint: www.biorxiv.org/content/10.6... 23710
Zikang (Dennis) Huang @dennishuang.bsky.social · 31/07/2026Congrats on the beautiful work and great luck with your own lab! 010
Reposted by Zikang (Dennis) HuangNature @nature.com · 29/07/2026Obituary: Susumu Tonegawa (1939-2026) Japan’s first Nobel prizewinner in physiology or medicine go.nature.com/4wty0Yygo.nature.comObituary: Susumu Tonegawa, Japan’s first Nobel prizewinner in physiology or medicineFearless molecular biologist who revealed the workings of antibodies and memories. 03114
Reposted by Zikang (Dennis) HuangCees Dekker @ceesdekker.bsky.social · 22/07/2026We built a a self-dividing synthetic cell ! Check out this #CDlab preprint on BioRxiv: www.biorxiv.org/content/10.6... Great work by 1st author Charu Sharma who encoded dynaminA in a genome and expressed that in liposomes that then divide into daughter cells! Collaboration with Koenderink lab! 24726
Reposted by Zikang (Dennis) Huangjared toettcher @toettch.bsky.social · 24/07/2026New Toettchlab paper alert! Harrison Oatman just published his beautiful work combining software design for "smart" microscopy+optogenetics and some really beautiful work understanding EGFR-driven collective cell migration. www.cell.com/cell-systems... 213942
Reposted by Zikang (Dennis) HuangCarl Zimmer @carlzimmer.com · 22/07/2026Did Thoreau encounter contagious cancer? A new study finds transmissible tumors in catfish--and raises questions about whether they could arise in humans someday. Gift link: nyti.ms/4whfi6vnyti.msDeep in This Lake, a Contagious Cancer Is Spreading (Gift Article)Transmissible tumors have been reported in a handful of animal species, but never before among fish. Is it possible in humans? 611950
Zikang (Dennis) Huang @dennishuang.bsky.social · 21/07/2026Impressive closed loop control of optogenetics from the Toettcher lab. Crazy video on flipping cell migration by changing speed of egfr activation. These automated systems will generate more data driven hypotheses in the future. Congrats! www.cell.com/cell-systems...cell.comAn optogenetic smart microscopy platform reveals signaling dynamics-dependent control over collective cell migrationOatman et al. introduce PyCLM, a Python suite for closed-loop optogenetic experiments combining real-time biosensor measurement and segmentation of thousands of cells. The method is applied to epithel... 0158
Zikang (Dennis) Huang @dennishuang.bsky.social · 07/07/2026SpudCell - a minimal synthetic cell. To me it lies between virus and modern cells, further blurring the boundary of living and non-living. What’s the upper limit of supply from environment for living organisms? Are ribosomes too much to ask? www.biorxiv.org/content/10.6...biorxiv.org 020
Zikang (Dennis) Huang @dennishuang.bsky.social · 21/06/2026Wanna know more about a photoreceptor that encodes a signal adaptation circuit in a single protein, its evolution, and how we engineer it into different info processing modes? Check out poster #26 (and flash talk!) on Tuesday at FASEB signaling! 062
Zikang (Dennis) Huang @dennishuang.bsky.social · 19/06/2026More than just on/off state! What if we can install a timer inside of CAR that has genetically encodable optimal off kinetics instead of depending on I endogenous processes. 010
Reposted by Zikang (Dennis) HuangNature @nature.com · 15/06/2026Nature research paper: Gene ancestries reveal diverse microbial associations during eukaryogenesis go.nature.com/3Sjm8ZYgo.nature.comGene ancestries reveal diverse microbial associations during eukaryogenesis - NaturePhylogenomic reconstruction of the proteome of the last eukaryotic common ancestor sheds light on the origin of eukaryotes, indicating an important role of horizontal transfer of genes from diverse bacterial and viral donors. 3217
Zikang (Dennis) Huang @dennishuang.bsky.social · 06/06/2026A synNotch based reaction diffusion system! 010
Zikang (Dennis) Huang @dennishuang.bsky.social · 28/05/2026Very impressive work from my friend Xinyi! www.nature.com/articles/s41...nature.comProgrammable macromolecule delivery via engineered trogocytosis - Nature Cell BiologyChen et al. engineer TRANSFER (trogocytosis-inspired receptor transfer and functional effector release), a method to deliver functional cargos from donor to recipient cells in a specific manner via di... 000
Zikang (Dennis) Huang @dennishuang.bsky.social · 28/05/2026www.science.org/doi/10.1126/...science.orgScalable and cost-efficient custom gene library assembly from oligopoolsOMEGA enables scalable, low-cost construction of large gene libraries using multiplexed Golden Gate assembly. 032
Reposted by Zikang (Dennis) HuangbioRxiv Genomics @biorxiv-genomic.bsky.social · 02/01/2026Multiplexed measurements of protein-protein interactions and protein abundance across cellular conditions using Prod&PQ-seq www.biorxiv.org/content/10.64898/20… 022
Zikang (Dennis) Huang @dennishuang.bsky.social · 17/05/2026Wild that Galvanin is sufficient to make some cells sense and migrate in electrical field - curious on the downstream signaling it induces to do so www.cell.com/cell/fulltex...cell.comGalvanin (TMEM154) is an electric-field sensor for directed cell migrationGalvanin is an electric-field sensor that links electrical cues to directed migration in rapidly moving cells. 000
Reposted by Zikang (Dennis) HuangHelen Pearson @helenpearson.bsky.social · 08/05/2026Some of the most wonderful Attenborough pictures here: www.nature.com/immersive/d4...nature.comA life in pictures: Celebrating Attenborough at 100As the British naturalist celebrates a milestone birthday, we take a look at how his work has shaped science. 010335
Reposted by Zikang (Dennis) HuangWaggoner Lab @labwaggoner.bsky.social · 24/04/2026Synthetic multicolor antigen-stabilizable nanobody platform for intersectional labeling and functional imaging @natmethods.nature.com @einsteinmededu.bsky.social @salkinstitute.bsky.social www.nature.com/articles/s41... 012
Zikang (Dennis) Huang @dennishuang.bsky.social · 26/03/2026www.nature.com/articles/s41...nature.comOxygen supply through the tracheolar–muscle system does not constrain insect gigantism - NatureNew evidence suggests that diffusive oxygen transport through the tracheolar–muscle system is not the limiting factor on insect body size. 010
Reposted by Zikang (Dennis) HuangYoung Biophysicists Meeting @youngbiophymeet.bsky.social · 26/03/2026Deadline approaching! Submit your abstracts for the 10th session of YBM by tomorrow. Abstract submission link: forms.gle/SBeQeAp9MR2U... 023
Reposted by Zikang (Dennis) HuangRavi Nath @ravi-nath.bsky.social · 17/03/2026Lifelong behavioral screen reveals an architecture of vertebrate aging | Science Was a wonderful collaboration with @clairebedbrook.bsky.social, Libby Zhang, Scott Linderman, @brunetlab.bsky.social & @deisseroth.bsky.social www.science.org/doi/10.1126/...science.orgLifelong behavioral screen reveals an architecture of vertebrate agingMapping behavior of individual vertebrate animals across lifespan could provide an unprecedented view into the lifelong process of aging. We created a platform for high-resolution continuous behaviora... 1213
Zikang (Dennis) Huang @dennishuang.bsky.social · 19/03/2026www.nature.com/articles/s41...nature.comSingle-molecule peptide sequencing through reverse translation of peptides into DNA - Nature BiotechnologyPeptides are sequenced by converting each amino acid into amplifiable DNA barcodes. 021
Zikang (Dennis) Huang @dennishuang.bsky.social · 16/03/2026www.cell.com/cell/fulltex... Super smart design of a system for evolving dynamics, congrats!!cell.comLight-directed evolution of dynamic, multi-state, and computational protein functionalitiesOptovolution leverages optogenetics and the yeast cell cycle to impose rapid, tunable selection, enabling the continuous evolution of light-responsive regulators, logic gates, and other complex protei... 020
Zikang (Dennis) Huang @dennishuang.bsky.social · 12/03/2026This is wild, our cellular clocks can be entrained by temp oscillations; even just 1.5C(!) changes; curious to see what happened molecularly to allow this big transition. www.science.org/doi/10.1126/...science.orgA cellular basis for the mammalian nocturnal-diurnal switchEarly mammals were nocturnal while dinosaurs dominated the daytime. Mammalian transition to daytime activity accelerated after the Cretaceous-Paleogene extinction, but the underlying mechanisms remain... 000
Zikang (Dennis) Huang @dennishuang.bsky.social · 12/03/2026Not what I expected: increase in inter species feeding cooperativity is an indicator of many diseases www.science.org/doi/10.1126/...science.orgImbalance in gut microbial interactions as a marker of health and diseaseImbalances in the human gut microbiome, or dysbioses, are associated with multiple diseases but remain poorly understood. Existing biomarkers of dysbiosis fail to capture the ecological mechanisms tha... 010
Reposted by Zikang (Dennis) HuangJames Lingford @jameslingford.bsky.social · 22/02/2026Structural ontogeny of protein-protein interactions: www.science.org/doi/10.1126/... Fundamental work on how PPIs (co)evolve, combining directed evolution and machine learning to reveal the role of chance and contingency. 0136
Zikang (Dennis) Huang @dennishuang.bsky.social · 09/02/2026@GRC photoreceptor and signal transduction now! Please come and check my poster #22 on single proteins that’s adaptive to light stimulation! 041
Reposted by Zikang (Dennis) HuangLukasz Bugaj @bugajlab.bsky.social · 02/02/2026Now in print at ACS Synbio! Introducing Aviatar: a concept for inducible translocation to any cell compartment using only a 1-component probe pubs.acs.org/doi/10.1021/...pubs.acs.orgOptogenetic Translocation to Subcellular Compartments through Regulation of Protein AvidityInducible translocation to subcellular compartments is a common strategy for protein switches that control a variety of cell behaviors. However, existing switches achieve translocation through induced... 0196
Zikang (Dennis) Huang @dennishuang.bsky.social · 31/01/2026Our new paper just out! pubs.acs.org/doi/10.1021/...pubs.acs.orgOptogenetic Translocation to Subcellular Compartments through Regulation of Protein AvidityInducible translocation to subcellular compartments is a common strategy for protein switches that control a variety of cell behaviors. However, existing switches achieve translocation through induced... 2139
Zikang (Dennis) Huang @dennishuang.bsky.social · 31/01/2026Wild that curling it up is the way to go for prolonging the recording period of protein tapes www.nature.com/articles/s41...nature.comScalable and multiplexed recorders of gene regulation dynamics across weeks - NatureNature - Scalable and multiplexed recorders of gene regulation dynamics across weeks 000
Reposted by Zikang (Dennis) HuangDi Jiang @dijiang319.bsky.social · 15/01/2026🧬🔬@science.org A genetically encoded device for #transcriptome storage in mammalian cells | Science www.science.org/doi/10.1126/... @broadinstitute.orgscience.orgA genetically encoded device for transcriptome storage in mammalian cellsUnderstanding how cells make decisions over time requires the ability to link past molecular states to future phenotypic outcomes. We present TimeVault, a genetically encoded system that records and s... 15525
Reposted by Zikang (Dennis) HuangTay (Antonio J. Osuna Mascaró) @biotay.bsky.social · 14/01/20261/3 Jellyfish and anemones also sleep, despite not having a brain Not only do they sleep, but their behavior is affected if they lack sleep; they become clumsier and need to catch up on lost sleep. Interestingly, they sleep 8 hours a day, just like us. (paper) www.nature.com/articles/s41... 412052
Reposted by Zikang (Dennis) HuangAlice Ting @aliceyting.bsky.social · 08/01/2026Can we design mutations that bias proteins towards desired conformational states? Today in @science.org, we introduce Conformational Biasing (CB), a simple and scalable computational method that uses contrastive scoring by inverse folding models to identify conformation-biasing mutations.science.orgComputational design of conformation-biasing mutations to alter protein functionsConformational biasing (CB) is a rapid and streamlined computational method that uses contrastive scoring by inverse folding models to predict protein variants biased toward desired conformational sta... 111737
Reposted by Zikang (Dennis) HuangSanta Fe Institute @sfiscience.bsky.social · 30/12/2025Now accepting applications for SFI’s 2026 CSSS program, a 3-week experience for graduate students, postdoctoral fellows, and professionals to explore foundational theory, engage in collaborative projects, and connect with a global research community. Apply by Feb 4, 2026 www.santafe.edu/csss 02914
Zikang (Dennis) Huang @dennishuang.bsky.social · 30/12/2025Contextual computation by competitive protein dimerization networks www.cell.com/cell/fulltex...cell.comContextual computation by competitive protein dimerization networksCompetitive dimerization networks, in which protein monomers dimerize in various combinations, can perform diverse biochemical computations and can adapt those computations for different cell contexts... 020
Zikang (Dennis) Huang @dennishuang.bsky.social · 17/12/2025Another surprising result from our lab showing that condensation is dispensable in RTK fusion oncogenic signaling. Please be sure to look at non-condensing cells in your plate:) Very smart exp. design and analysis to convincingly show sth *isn’t* important. 030
Zikang (Dennis) Huang @dennishuang.bsky.social · 16/12/2025Latest from our group investigating how oncogenic RTK fusions both activate and suppress mitogenic signaling. Also beautifully demonstrated that condensates are dispensable for both roles together with another preprint coming out soon. 020
Reposted by Zikang (Dennis) HuangbioRxiv SysBio @biorxiv-sysbio.bsky.social · 15/12/2025Predicting and Controlling Collective Fate in Multicellular Systems www.biorxiv.org/content/10.64898/20… 011
Zikang (Dennis) Huang @dennishuang.bsky.social · 09/12/2025One of the most interesting discoveries of the year - the immune function of degraded proteins Also fun to think about how this whole proteome coordination has evolved www.nature.com/articles/s41...nature.comCell-autonomous innate immunity by proteasome-derived defence peptides - NatureProteasomal degradation of cellular proteins generate defence peptides constitutively and in response to bacterial infection. Such peptides might provide a source of natural antibiotics that... 020
Reposted by Zikang (Dennis) HuangLukasz Bugaj @bugajlab.bsky.social · 08/12/2025#Cellbio2025 come see the latest from the lab, including on opto/thermogenetics, condensates, RTK fusions, stress granules, biosensors of clustering. Talks and posters today and tomorrow! 186
Zikang (Dennis) Huang @dennishuang.bsky.social · 08/12/2025Our neighbor @hugheslabpenn.bsky.social grows cool opto-kidneys, check them out! 000
Zikang (Dennis) Huang @dennishuang.bsky.social · 07/12/2025#cellbio2025 please stop by my talk (Mon 4:35 evolution) and poster (Mon 12:45 #B479 optogenetics) tmr! Title: Intraprotein domain competition dictates pulsatile response of photoreceptors shaped by temperature and evolution. BcLOV4 as a model. I’m also looking for postdoc opportunities! 0166
Reposted by Zikang (Dennis) HuangLukasz Bugaj @bugajlab.bsky.social · 07/12/2025#CellBio2025 come check out the workshop on applying optogenetic tools in cell biology! Today (Sunday) at 5:30p in Rm 121. Note that this session does *not* appear in the app for some reason 0104
Zikang (Dennis) Huang @dennishuang.bsky.social · 02/12/2025In vivo proteomics www.cell.com/molecular-ce...cell.comIn vivo proteomic labeling reveals diverse proteomes for therapeutic targetsWang et al. establish an in vivo proteomic labeling (IVPL) system combining the Btn-Ph-3F substrate with APEX2-EGFPf/f Cre crosses to map cell-type-specific proteomes in intact organs and trace patien... 000