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CSConn

@csconn-phd.bsky.social
359 followers 251 following 28 posts

Assistant Prof @PennMedicine interest in #RNA regulation, mRNA translation, and adaptative stress responses in cancer bio. Advocate for Science, Research, Healthy living & Equality #STEM #FirstGen #Nonbinary They/Them

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CSConn @csconn-phd.bsky.social · 06/04/2026
Incredibly proud of the lab's first two graduate students, Nora & Morgan, for embarking to Albany to share their research through @thernainstitute.bsky.social symposium. Congratulations to Morgan for her 1st poster & -> 1st poster award!
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CSConn @csconn-phd.bsky.social · 13/02/2026
Happy Valentine's Weekend to all, very fortunate to my fantastic group & them being eachothers' Valentines :)
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CSConn @csconn-phd.bsky.social · 17/10/2025
So much already this Fall! Fantastic posters by our undergraduates, Celebrating Nora's 1% on her F31, our annual pumpkin picking outing, & invited Book Chapter just accepted this week (will share when out). Happy Fall to All :)
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CSConn @csconn-phd.bsky.social · 19/08/2025
Happy to have another Summer complete for SUPERS'25! They are a phenomenal group that I'm fortunate to interact with for our 10wk program. Special Congratulations to the Winners of the Stephen W. Tuttle Research Award Orly Perez Frid & Kaitlin Chung & hope to have this program another 5+yrs!
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CSConn @csconn-phd.bsky.social · 31/07/2025
More of this please: “As biologists, we know that rigid binary definitions of sex and gender are not supported by scientific observations,” the authors wrote. “As people, we know that insistence on these rigid definitions harms and marginalizes many who do not easily fit within them.”
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Markus Landthaler @landthalerm.bsky.social · 22/07/2025
www.cell.com/cell/fulltex...
cell.com
SPIDR enables multiplexed mapping of RNA-protein interactions and uncovers a mechanism for selective translational suppression upon cell stress
SPIDR, a massively multiplexed method that simultaneously maps dozens of RNA-binding proteins to their RNA targets at single-nucleotide resolution, uncovers new RNA-protein interactions and provides c...
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febsopenbio.bsky.social @febsopenbio.bsky.social · 04/04/2025
📌 Pin to your calendars! 🧪 Protein synthesis and translational control🧪 ⏳Don't miss these deadlines Abstracts Jun 1 ✏️ Register On-site Jul 23 Virtual Aug 27 🖱️https://buff.ly/hs1wWTS #ProteinSynthesis ##TranslationalControl #mRNAtranslation
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CSConn @csconn-phd.bsky.social · 15/05/2025
Cool new work explaining the dynamics of mRNA translation with the ribosome to inhibit SG localization- by the Moon Lab #ribosomes #uORF #mRNATranslation #StressResponse genesdev.cshlp.org/content/earl...
genesdev.cshlp.org
Ribosome association inhibits stress-induced gene mRNA localization to stress granules
A biweekly scientific journal publishing high-quality research in molecular biology and genetics, cancer biology, biochemistry, and related fields
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Eric Chevet @ericchevet.bsky.social · 06/04/2025
This week's selection of articles and #preprints on #proteostasis thanks to @biomednews.bsky.social -- biomed.news/bims-proteo/... Highlight: Translation dysregulation in cancer as a source for targetable antigens www.sciencedirect.com/science/arti...
biomed.news
bims-proteo 2025-04-06 papers
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Kaçar Lab at UW-Madison @kacarlab.bsky.social · 24/03/2025
🚨New paper!🚨 A comprehensive take on the origins and evolution of translation factors & how these essential players evolved across the tree of life. 🌍🧬 Led by Evrim Fer @uwmadisonmdtp.bsky.social grad student! 👏 Free access: www.sciencedirect.com/science/arti... @cp-trendsgenetics.bsky.social
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Rachael Sirianni, PhD @docsirianni.bsky.social · 27/03/2025
They are cutting cancer research. They are cutting cancer research. They can deny it all they want, but they are cutting cancer research. These are the cuts being made the DoD CDMRP cancer funding mechanism www.fightcancer.org/sites/defaul...
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CSConn @csconn-phd.bsky.social · 31/01/2025
Oooo pretty new MassSpec data coming in (only slightly hung-up on the 1/78 samples that wasn't perfect lol)
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CSConn @csconn-phd.bsky.social · 24/01/2025
Looking forward to sharing our research @rutgersupress.bsky.social tomorrow @12 Nelson D406
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Xuebing Wu @xuebingwu.bsky.social · 02/01/2025
Excited to share our review article "Finding functional microproteins", published in @TrendsGenetics. It was fun writing it together with Alex and @FeiyueYang1 in the lab. #microprotein authors.elsevier.com/a/1kNCscQbJB...
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Dr. Thomas Martínez @thomasmartinez.bsky.social · 14/01/2025
Excited to share our @cp-trendsgenetics.bsky.social Spotlight Article highlighting the development of #ribo-seq by @nickingolia.bsky.social and how it has revolutionized the study of #microproteins! www.sciencedirect.com/science/arti...
sciencedirect.com
Ribosome profiling reveals hidden world of small proteins
The development of ribosome profiling (Ribo-seq) by Ingolia et al. introduced a powerful new method for monitoring translation genome-wide. Applicatio…
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Marco Hein @marco.heinlab.org · 14/01/2025
Time to share our organelle proteome paper out in @cellcellpress.bsky.social: doi.org/nzwz We created a spatial map of human cells using organelle immunoprecipitation at scale. Locate your fav protein among the 7,600 we mapped across 19 subcellular compartments: organelles.sf.czbiohub.org/ 1/3 🧪
Graphical abstract of the Organelle Profiling paper, showing the workflow:
Endogenously tagged organelle library;
Native IP proteomics;
Data-driven graph clustering;
resulting in a subcellular proteome map with
more than 7,600 proteins localized across 19 subcellular compartments.
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John Prensner @johnprensner.bsky.social · 11/01/2025
If you had any question that microproteins / micropeptides are the next wave in #cancer 🌊 Well this is the paper that you need to read. 🔎 microproteins 🧬 💻 #RNAsky #genomics #bioinformatics www.biorxiv.org/content/10.1...
biorxiv.org
Upstream open reading frame translation enhances immunogenic peptide presentation in mitotically arrested cancer cells
Mitosis is a critical phase of the cell cycle and a vulnerable point where cancer cells can be effectively disrupted, leading to cell death and inhibition of tumor growth. However, challenges such as ...
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Hani Goodarzi @genophoria.bsky.social · 02/01/2025
The first preprint of 2025! Together with Matvei, @halfacrocodile.bsky.social, & our amazing team, we are excited to share PARADE: an AI framework for designing mRNA UTRs with enhanced cell-type specificity & stability. www.biorxiv.org/content/10.1...
biorxiv.org
A generative framework for enhanced cell-type specificity in rationally designed mRNAs
mRNA delivery offers new opportunities for disease treatment by directing cells to produce therapeutic proteins. However, designing highly stable mRNAs with programmable cell type-specificity remains ...
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Christian Frezza @frezzalab.bsky.social · 02/01/2025
Congratulations to @fendtlab.bsky.social amd @ginevradoglioni.bsky.social for this massive work "Aspartate signalling drives lung metastasis via alternative translation" www.nature.com/articles/s41...
nature.com
Aspartate signalling drives lung metastasis via alternative translation - Nature
Aspartate in the tumour environment activates the N-methyl-d-aspartate receptor in cancer cells to induce cellular programmes that increase the aggressiveness of metastasis.
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Stephen Floor @snf.bsky.social · 18/12/2024
Great work from Gloria Brar’s group on the role of paralogous RNA helicases in the heat shock response. Surprising increase in growth at high temperature and impact of a short motif! Also important implications of the role of biomolecular condensation. Awesome www.cell.com/cell-reports...
cell.com
Analyses of translation factors Dbp1 and Ded1 reveal the cellular response to heat stress to be separable from stress granule formation
Kuwayama and Powers et al. reveal differences in function for two related RNA remodelers. Dbp1 is poor at stimulating translation, but, when expressed instead of Ded1, it prevents cells from halting growth upon heat stress. This depends on a short disordered Ded1 region but not stress granule formation or reduced translation.
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Oxford Nanopore @nanoporetech.com · 18/12/2024
Direct RNA sequencing is featured as one of The Scientist 2024 Top 10 Innovations. Read to find out how the latest direct RNA #nanopore sequencing kit and flow cell has improved accuracy and output, enabling a more complete picture of the landscape of RNA Read: www.the-scientist.com/2024-top-10-...
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CSConn @csconn-phd.bsky.social · 16/12/2024
What is the best distance-adjusting, multi-channel to go from Eppendorf 1.5/2mL tubes to 96-well plate format?
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Ruben Gonzalez @rubenlgonzalez.bsky.social · 11/12/2024
Our latest work is out in Nature today! Using smFRET, we directly visualized recruitment of the eIF4F complex to the 5' cap of eukaryotic mRNAs and formation of an activated mRNA. Our findings reveal new and surprising roles for each eIF4F component. 1/3 www.nature.com/articles/s41...
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CSConn @csconn-phd.bsky.social · 12/12/2024
Applications for our SUPERS 2025 Summer Internship open today! Share with undergraduates you know interested in learning/studying translational medicine from Cancer Bio, Radiobiology & Imaging, to Medical Physics med.upenn.edu/supers/
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CSConn @csconn-phd.bsky.social · 12/12/2024
@themodzlab.bsky.social worlds colliding ;)
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CSConn @csconn-phd.bsky.social · 11/12/2024
Look forward to reading this in full!
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Rong Fan @rongfan8.bsky.social · 07/12/2024
SPATIAL PROTEOMICS is the Method of the Year 2024!!! 🤩🤩🤩 www.nature.com/articles/s41...
nature.com
Method of the Year 2024: spatial proteomics - Nature Methods
Approaches for profiling the spatial proteome in tissues are the basis of atlas-scale projects that are delivering on their promise for understanding biological complexity in health and disease.
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Micha Rapé Lab @micharapelab.bsky.social · 06/12/2024
Excited to reveal specific reactive oxygen species as sentinel molecules that control localized protein degradation at #mitochondria to adjust electron transport chain abundance, with many implications for the role of ROS in development and disease. www.cell.com/molecular-ce...
cell.com
Reactive oxygen species control protein degradation at the mitochondrial import gate
This work identifies reactive oxygen species released by the electron transport chain as sentinel molecules that regulate localized protein degradation at mitochondrial TOM complexes, a mechanism that controls mitochondrial protein import and adjusts the abundance of the electron transport chain to cellular needs.
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Shinichi Nakagawa @smoltblue.bsky.social · 02/12/2024
Looking forward to enjoying the full taste of RNA! www.embl.org/about/info/c...
embl.org
The expanding world of RBPs: from posttranscriptional control to riboregulation
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Joana Silva @thejoanasilva.bsky.social · 24/11/2024
Are you a scientist working or interested in RNA Translation? Join our starter pack and share ideas, methodologies and tips to advance our knowledge in how life came to be! #RNA #ribosome go.bsky.app/VN78eTo
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bioRxiv Genomics @biorxiv-genomic.bsky.social · 25/11/2024
The conserved landscape of RNA modifications and transcript diversity across mammalian evolution www.biorxiv.org/content/10.1101/202…
biorxiv.org
The conserved landscape of RNA modifications and transcript diversity across mammalian evolution https://www.biorxiv.org/content/10.1101/2024.11.24.624934v1
Gene expression programs underpin the development of shared phenotypes, yet the importance of transc
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CSConn @csconn-phd.bsky.social · 21/11/2024
Awesome new work on tRNAs and staibilty! Check it out: www.science.org/doi/10.1126/...
science.org
Specific tRNAs promote mRNA decay by recruiting the CCR4-NOT complex to translating ribosomes
The CCR4-NOT complex is a major regulator of eukaryotic messenger RNA (mRNA) stability. Slow decoding during translation promotes association of CCR4-NOT with ribosomes, accelerating mRNA degradation....
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Stephen Floor @snf.bsky.social · 21/11/2024
endorse, and supported by data from Hannah Toutkoushian in her dissertation. glad to see more about eIF2A escholarship.org/uc/item/6pr6...
escholarship.org
Mechanistic investigation of protein homeostasis by two key factors, ATAD1 and eIF2A
Author(s): Toutkoushian, Hannah Kate | Advisor(s): Floor, Stephen | Abstract: Maintaining protein homeostasis is essential for a proper functioning cell. From the time a polypeptide chain begins to b...
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John Prensner @johnprensner.bsky.social · 20/11/2024
#DarkGenome #NoncodingGenome fanatics - this one is for you. 👇 🧬 💻 🧪 #genomics #bioinformatics
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Danny IncaRNAto @incarnatolab.bsky.social · 15/11/2024
Fellow #RNA lovers, please repost 🙏: 2 ERC-funded Post-doc positions are available in our lab to investigate #RNA structural ensemble and their dynamics in living cells. Application link: t.co/pYJ3H3j705
t.co
https://www.rug.nl/about-ug/work-with-us/job-opportunities/?details=00347-02S000B06P
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CSConn @csconn-phd.bsky.social · 15/11/2024
If you are interested in #RNA regulation, translational control, cancer progression, and/or therapy resistance... (+cookies&Shenanigans): The Conn Lab is #Hiring for Postdoc and senior research positions @PennMedicine full description: rnasociety.memberclicks.net/postdoc-and-...
Lab group photo in Philly Summer 2023-2024, surrounded by RNA dot blots, polysomes, staining, colony formation assays, organoid photos, ultrasounds, and MRI imaging.
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CSConn @csconn-phd.bsky.social · 13/06/2024
Happy to welcome three Summer Undergraduate Scholars to the lab this Summer: Vinny Dong (PURM), Keiko Luke (SUPERS), and Hemanta Adhikari (PURM). Exited to see & share the discoveries they will make on mRNA selection in response to prostate cancer therapy! csconnlab.com/team
Outdoor images of three students: Vinny Dony, Keiko Luke, and Hemanta Adhikari
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CSConn @csconn-phd.bsky.social · 24/04/2024
Looking forward to seeing Andrew Hsieh tonight and hearing about some of their lab's fantastic research tomorrow. It's been too long :) Come join us in Smilow @12 (lunch included) to learn more about how RNA is awesome!
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CSConn @csconn-phd.bsky.social · 18/04/2024
Happy Spring to all! Quick Conn Lab updates: Ian received the NSF & Ashley will be attending Penn CancerBio for PhD program :) I'm also truly honored to have received the 2024 Michael P. Nusbaum Graduate Student Mentoring Award. Grateful for such spectacular Mentees!
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CSConn @csconn-phd.bsky.social · 02/01/2024
Happy New Year from the Conn Lab! Celebrated with great company and gift exchange/heisting ;) Great year growing the team, collaborations, and moving along lots of new research. Best wishes to all for 2024! #RNAisAwesome #ConnLabShenanigans
Photo of 8 researchers in the Conn Lab /RadOnc department, enjoying a night out @LouieLouie for the HolidaysConn Lab Fall 2023 - shows 7 researchers smiling togetherconn Lab lego figures per each lab member
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Liana Lareau @lianafaye.bsky.social · 29/11/2023
Spurred on by ribosome profiling and other cool methods, translation elongation has grown into a whole field with new surprises all the time (and new relevance for vaccine mRNAs!). Here’s our latest on why synonymous codons aren’t all the same. (Thread) www.biorxiv.org/content/10.1...
biorxiv.org
Codon optimality modulates protein output by tuning translation initiation
bioRxiv - the preprint server for biology, operated by Cold Spring Harbor Laboratory, a research and educational institution
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Arjun Raj @arjunraj.bsky.social · 21/11/2023
We are looking for housekeeping genes (meaning ubiquitously expressed across tissues) that only exist in mouse or human (no ortholog). Anybody know some examples?
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CSConn @csconn-phd.bsky.social · 25/10/2023
Embracing Fall together... apple picking, picking, corn maze, bonfires and #connlabshenanigans
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