Reposted by Yasin KayaAngela Hancock @ahancock.bsky.social · 19/06/2026New paper led by Célia Neto presenting a multiparent intercross population (and trait mapping) from Cape Verde Arabidopsis parents 0127
Reposted by Yasin KayaEva-Sophie Wallner @eswallner.bsky.social · 27/05/2026Happy to announce that I have started my own research group at the MPIPZ and that I am looking for a postdoc who would like to investigate Marchantia prothallus development with me! Please spread the word and/or apply if interested :) 77249
Yasin Kaya @ysnky.bsky.social · 20/01/2026So grateful to contribute to the #TAIR12 community effort! It was a truly fun and informative journey refining the Arabidopsis thaliana annotation. Looking forward to the release on ENA! 🌱 081
Reposted by Yasin KayaRayan Chikhi @rayanchikhi.bsky.social · 03/09/2025🌎👩🔬 For 15+ years biology has accumulated petabytes (million gigabytes) of🧬DNA sequencing data🧬 from the far reaches of our planet.🦠🍄🌵 Logan now democratizes efficient access to the world’s most comprehensive genetics dataset. Free and open. doi.org/10.1101/2024... 3218118
Reposted by Yasin KayaErik Garrison @thinks.lol · 17/07/2025Postdoc position opening in my group! Research projects: pangenomes for diverse organisms, genome evolution, biocomputing, language models. Please reach out if interested! 12830
Reposted by Yasin KayaNature Plants @natplants.nature.com · 17/06/2025Two research highlights and three full papers about NLR-mediated resistance in wheat. Plant research is taking over @natgenet.nature.com ! 012
Reposted by Yasin KayaHeng Li @lh3lh3.bsky.social · 17/06/2025Preprint on "Improving spliced alignment by modeling splice sites with deep learning". It describes minisplice for modeling splice signals. Minimap2 and miniprot now optionally use the predicted scores to improve spliced alignment. arxiv.org/abs/2506.12986 011154
Reposted by Yasin KayaThe Arabidopsis Information Resource (TAIR) @tairnews.bsky.social · 06/05/2025The TAIR12 genome reannotation has FINALLY been submitted to GenBank. Now we await review and approval. Stay tuned for updates, hopefully within the next month. Thank you to everyone that made this project possible. @labschneeberger.bsky.social @bar-plantbio.bsky.social @sigmafacto.bsky.social 16425
Reposted by Yasin KayaPacBio @pacbio.bsky.social · 28/04/2025#PacBio expands HiFi methylation detection with new deep learning models from CUHK: 5hmC, hemimethylated 5mC, 6mA - no added cost, no new prep. Hear more at our #AACR25 workshop today. 🔗 bit.ly/4jNCnHT #HiFisequencing 042
Reposted by Yasin KayaHeng Li @lh3lh3.bsky.social · 18/04/2025Preprint on hifiasm Nanopore-only assembly. Led by Haoyu Cheng: www.biorxiv.org/content/10.1...biorxiv.orgEfficient near telomere-to-telomere assembly of Nanopore Simplex readsTelomere-to-telomere (T2T) assembly is the ultimate goal for de novo genome assembly. Existing algorithms capable of near T2T assembly all require Oxford Nanopore Technologies (ONT) ultra-long reads w... 513977
Reposted by Yasin KayaMax Planck Institute for Plant Breeding Research @mpipz.bsky.social · 17/04/2025📣Paper Alert! 📣New publication out @nature.com by @labschneeberger.bsky.social @mpipz.bsky.social and @lmumuenchen.bsky.social on the genome reconstruction of historic potato cultivars. 👏🌿🥔 Congratulations! 🥳👏Learn more 👉 bit.ly/3GeGcGX www.nature.com/articles/s41...nature.comThe phased pan-genome of tetraploid European potato - NatureA haplotype-resolved pan-genome of autotetraploid European potato founder lines shows high nucleotide diversity at remarkably low haplotype diversity, which is probably the result of hybridization eve... 0195
Reposted by Yasin KayaMax Planck Institute for Plant Breeding Research @mpipz.bsky.social · 21/03/2025📣Paper Alert! New publication @science.org by the group of @tonnigrubeandersen.bsky.social @mpipz.bsky.social, colleagues @ucph.bsky.social & others on the Casparian strip and its role in metabolic trade between plants & bacteria. 👏Learn more 👉https://bit.ly/4bJe4Yd www.science.org/doi/10.1126/...science.orgApoplastic barriers are essential for nodule formation and nitrogen fixation in Lotus japonicusEstablishment of the apoplastic root barrier known as the Casparian strip occurs early in root development. In legumes, this area overlaps with nitrogen-fixing nodule formation, which raises the possi... 0259
Reposted by Yasin KayaCRC TRR 341 "Plant Ecological Genetics" @trr341.bsky.social · 19/03/2025The #CologneSpringMeeting poster session featured over 70 presentations, fostering a vibrant social and networking atmosphere. Great discussions, new connections, and inspiring science all around! 0149
Reposted by Yasin KayaCRC TRR 341 "Plant Ecological Genetics" @trr341.bsky.social · 18/03/2025Cologne Spring Meeting starts with “Plant Ecological Genetics: From Lab to Nature and Back” talk by @meauxjuliette.bsky.social Exploring the bridge between laboratory insights and real-world plant ecology. #EcologicalGenetics #PlantScience 0115
Reposted by Yasin KayaCRC TRR 341 "Plant Ecological Genetics" @trr341.bsky.social · 16/03/2025Join the “PhD Career Perspectives Event” at the Cologne Spring Meeting 2025, March 17th at 17:00! Speakers: 👩🔬 Dr. Dorit Grundewald, Scientific Coordinator, Food Security Network 💡 Christina Kothes M.Sc., Innovation Manager, Institute for Plant Sciences 📍 MTI-Building (44b), Joseph-Stelzmann-Str. 9 011
Reposted by Yasin KayaDr. Miles Roberts @milesroberts.bsky.social · 05/03/2025Our review on k-mers + pop gen is now published! doi.org/10.1093/molb...doi.orgk-mer-based approaches to bridging pangenomics and population geneticsAbstract. Many commonly studied species now have more than one chromosome-scale genome assembly, revealing a large amount of genetic diversity previously m 04129
Reposted by Yasin KayaTeam Thomma @teamthomma.bsky.social · 20/02/2025Today we celebrate a wide diversity in plant sciences at the Symposium of our institute at @unicologne.bsky.social with support from @ceplas.bsky.social & @trr341.bsky.social #PlantScience 24019
Reposted by Yasin KayaIan Henderson @hendersi.bsky.social · 18/02/2025Centrophilic Retrotransposons of Plant Genomes www.annualreviews.org/content/jour... new review @annualreviews.bsky.social from @abousios.bsky.social, Tetsuji Kakutani, and myself on my favourite type of mobile genetic elementannualreviews.orgCentrophilic Retrotransposons of Plant Genomes | Annual ReviewsThe centromeres of eukaryotic chromosomes are required to load CENH3/CENP-A variant nucleosomes and the kinetochore complex, which connects to spindle microtubules during cell division. Despite their ... 12810
Reposted by Yasin KayaAngela Hancock @ahancock.bsky.social · 15/02/2025No job ad yet, but I'll be hiring a postdoc at Purdue in population genetics/quantitative genetics/genomics in plants. DM if you have relevant experience and are potentially interested. 16155
Reposted by Yasin KayaMax Planck Institute for Plant Breeding Research @mpipz.bsky.social · 10/02/2025We made it 😀 - excited to share our latest research and engage with this vibrant community here at Bluesky 🌿🪴 35614
Reposted by Yasin KayaNature Plants @natplants.nature.com · 29/01/2025New Resource: "Transposon proliferation drives genome architecture and regulatory evolution in wild and domesticated peppers" rdcu.be/d7YSt 11 genomes of wild and domesticated pepper: transposable elements have shaped the evolution of genome structure. 04318
Reposted by Yasin KayaNature Plants @natplants.nature.com · 16/01/2025New Article: "Convergent reduction of immune receptor repertoires during plant adaptation to diverse special lifestyles and habitats" rdcu.be/d6uFq A survey of plant immune receptor repertoires in 808 angiosperm genomes. #PlantScience 23519