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Schneeberger Lab

@labschneeberger.bsky.social
257 followers 48 following 30 posts

Genome Plasticity and Computational Genetics. We develop cutting-edge technologies to explore genome evolution! Lab Website: schneebergerlab.org

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Schneeberger Lab @labschneeberger.bsky.social · 28/09/2026
Thrilled to share our new @nature.com paper from Xiao Dong on the mutational dynamics of centromeres in Arabidopsis thaliana! 🌱 A quick thread on what we found... 🔗 doi.org/10.1038/s415...
doi.org
The mutational dynamics of the Arabidopsis centromeres - Nature
Centromeres in Arabidopsis thaliana evolve through frequent insertions and deletions of repeat units and increased rates of point mutations driven by homology-directed repair, a mutation spectrum that...
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Schneeberger Lab @labschneeberger.bsky.social · 03/03/2026
🥔 We traced the ancestral legacy of modern breeding introgressions in European potato! Combining pedigree records & genome-wide SNPs, we reveal which wild relatives shaped the European gene pool and how. 📄 doi.org/10.1007/s00122-025-05143-z
doi.org
Tracing modern breeding introgressions in European potato - Theoretical and Applied Genetics
The European potato germplasm originated from a few founding genotypes, and its narrow genetic base has since been broadened through introgressions from wild relatives. We combined pedigree records an...
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Schneeberger Lab @labschneeberger.bsky.social · 23/02/2026
🌾 We have an open postdoc position in Plant Genomics in our group at HHU Düsseldorf! If you enjoy computational biology, asking big questions, and the satisfaction of code working on the first try, check out schneebergerlab.org/career/ Apply by Mar. 31 | 3-year postdoc | German skills required
schneebergerlab.org
Career – Schneeberger Lab
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Schneeberger Lab @labschneeberger.bsky.social · 05/02/2026
Just in time for Karneval, we present coelsch ! 🎭🥳 A platform-agnostic framework for single-cell recombination analysis. We study crossover variation in mutants & natural lines, identifying the largest natural inversion in A. thaliana to date! 📄 doi.org/10.64898/202... 🐱 github.com/schneeberger...
doi.org
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André Marques @amarques.bsky.social · 21/01/2026
3️⃣ Sex without crossovers mimics clonal reproduction in Rhynchospora tenuis 🌱 An extreme meiotic outcome: faithful segregation without crossovers in a holocentric plant. 🔗 doi.org/10.64898/202... #Preprint #GenomeEvolution #Meiosis4eva #centromere #Pangenomics
doi.org
Sex without crossovers mimics clonal reproduction in the holocentric plant Rhynchospora tenuis
Meiotic recombination ensures accurate chromosome segregation and promotes genetic diversity by generating crossovers between homologous chromosomes. While essential in most sexually reproducing organisms, recombination is variably regulated and can be absent in some lineages, a condition known as achiasmy. However, obligate achiasmy in both sexes of a sexual species has not been previously documented. Here, we investigate the beak-sedge Rhynchospora tenuis, a holocentric plant with the lowest known chromosome number among flowering plants (n = 2) and inverted meiosis. Using chromosome-scale genome assemblies from nine accessions, molecular cytogenetics, immunocytochemistry, high-throughput single-gamete sequencing and whole-genome sequencing of controlled crosses, we show that R. tenuis undergoes obligate, genome-wide achiasmy in both male and female meiosis. Despite normal early meiotic axis formation, synapsis fails, crossovers are not detected cytologically or genetically, and univalents persist at metaphase I. Extensive haplotype-specific accumulation of transposable elements (TEs) generates segregation distortion (e.g. meiotic drive), favouring the transmission of larger, TE-rich chromosomes. Remarkably, sexual reproduction is retained with fertilisation producing viable seeds only when translocation-compatible gametes meet, indicating strong post-meiotic selection that eliminates incompatible homozygous combinations. As a result, all surviving offspring are genetically identical to the maternal genotype, effectively restoring heterozygosity each generation and mimicking clonal reproduction. We propose that the combined effects of recombination loss, low chromosome number, holocentricity, inverted meiosis, and selective transmission of longer chromosomes enable faithful segregation and clonal-like inheritance despite sexual reproduction. These findings challenge the boundary between sex and clonality, revealing a unique evolutionary strategy linking genome architecture, recombination loss, and transmission bias. ### Competing Interest Statement The authors have declared no competing interest.
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André Marques @amarques.bsky.social · 21/01/2026
📢 Three new #bioRxiv preprints from our team on holocentric chromosomes. Together, they connect centromere repeat evolution, karyotype dynamics, and meiotic recombination outcomes, revealing how holocentric genomes evolve and function. 🧬👇
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Schneeberger Lab @labschneeberger.bsky.social · 11/11/2025
🌱 Postdoc position in Plant Genomics/Bioinformatics! Love genome plasticity, computational methods, and solving big questions in plant biology? Join our newly established Institute for Crop Biology at HHU Düsseldorf. More info on schneebergerlab.org/career/ Apply by Nov. 30 | 3-year position
schneebergerlab.org
Career – Schneeberger Lab
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PlantEvolution 🌱🌾 @plantevolution.bsky.social · 27/10/2025
1/2 Want to become up to date with pangenomes and genome graphs and their history? Check out this fantastic review by @zbao.bsky.social! Complexity welcome: Pangenome graphs for comprehensive population genomics #pangenomes #plantscience #genomegraphs www.cambridge.org/core/journal...
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PlantEvolution 🌱🌾 @plantevolution.bsky.social · 06/06/2025
Awesome new work from @labschneeberger.bsky.social (with a small contribution from the Weigel lab). Experimentally observed mutational patterns in centromeres underpin a model that recapitulates intra-specific centromere divergence! www.biorxiv.org/content/10.1...
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Schneeberger Lab @labschneeberger.bsky.social · 06/06/2025
New preprint out from our lab, showing how mutations drive centromere evolution! 🧬 Check out this thread from Xiao Dong to learn more.
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CEPLAS - Cluster of Excellence on Plant Sciences @ceplas.bsky.social · 23/04/2025
🍹In our new #PlantersPunch CEPLAS Postdoc Craig Dent from @labschneeberger.bsky.social @mpipz.bsky.social pz.bsky.social explains why the DNA of the European potato is at the same time diverse...and not diverse🤔! Very exciting story! One question remains: which one tastes best 🥔🍟😜? ➡️ bit.ly/42Mys6F
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Schneeberger Lab @labschneeberger.bsky.social · 16/04/2025
Interested in hearing more about the story behind our latest paper? Check out our blog post and the latest @naturepodcast.bsky.social episode! 📝 go.nature.com/3G73vT7 🎙️ www.nature.com/articles/d41...
go.nature.com
A Recipe for Complexity: Building the Potato Pan-Genome
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Schneeberger Lab @labschneeberger.bsky.social · 16/04/2025
📢 Excited to share our work out now in @nature.com! 📢 We present the phased pan-genome of tetraploid European potato, based on 10 historical cultivars representing 85% of European potato diversity. Learn more below! 🔗 www.nature.com/articles/s41... 1/7
nature.com
The phased pan-genome of tetraploid European potato - Nature
A haplotype-resolved pan-genome of autotetraploid European potato founder lines shows high nucleotide diversity at remarkably low haplotype diversity, which is probably the result of hybridization eve...
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