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Rommie Amaro

@rommieamaro.bsky.social
4.7K followers 633 following 331 posts

Professor at UC San Diego. Computational biophysics, biology, chemistry. Multiscale modeler. Viruses. Cancer. Co-Director of the Airborne Institute.

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Reposted by Rommie Amaro
Abby Dommer @abbydommer.bsky.social · 11/12/2025
My little outlook on how our lungs 🫁 are like the sea 🌊 is finally out in Central Science. Thanks to the support from incredible mentors @rommieamaro.bsky.social and @kprather.bsky.social !!
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Carl Zimmer @carlzimmer.com · 07/12/2025
A new review explores one of the themes of my book Air-Borne: our lungs are like the ocean. Both send life into the atmosphere. pubs.acs.org/doi/full/10....
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Linsey Marr @linseymarr.bsky.social · 08/12/2025
Fascinating outlook on similarities in aerosolization of microbes from the ocean surface and respiratory tract fluid by Dommer @rommieamaro.bsky.social @kprather.bsky.social
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Vanni Lab at UNIFR, Switzerland @labvanni.bsky.social · 07/08/2025
Happy to share the latest from the lab, led by Daniel Alvarez, in collaboration with @lizconibear.bsky.social‬. In this AA-MD tour-de-force, we delve deep into the mechanism and energetics of lipid uptake by bridge-like lipid transfer proteins, and we learn a few interesting things along the way...
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Liz Essley Whyte @lizessleywhyte.bsky.social · 30/07/2025
UPDATE: The pause was scrapped Tuesday evening after intervention by top White House officials. www.wsj.com/politics/pol...
wsj.com
Trump Administration Scraps Effort to Pause Health-Research Funding
The administration halted and then restarted billions in new research grants flowing from the National Institutes of Health.
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Jeremy Berg @jeremymberg.bsky.social · 30/07/2025
Given that OMB is part of the Executive Office of the President, this should read "after intervention by OTHER top White House Officials."
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Jeremy Berg @jeremymberg.bsky.social · 30/07/2025
2/n
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Jeremy Berg @jeremymberg.bsky.social · 30/07/2025
/fin
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Jeremy Berg @jeremymberg.bsky.social · 30/07/2025
WSJ story about OMB blocking NIH spending and grant making www.wsj.com/politics/pol... 1/n
wsj.com
Trump Administration Puts New Chokehold on Billions in Health-Research Funding
The National Institutes of Health can’t award grants to outside researchers under a new White House restriction.
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Gabriela K Popescu @popstarlab.bsky.social · 25/07/2025
Did you know about the BPS Bridging Funds Program? If you're a biophysicist navigating a difficult time, this program is for you to defray costs for attending the BPS Annual Meeting! I am grateful to the @biophysicalsoc.bsky.social for supporting our members! www.biophysics.org/2026meeting/...
biophysics.org
BPS2026 Travel Awards | Biophysical Society
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Needhi Bhalla 💅🏽 @needhibhalla.bsky.social · 25/07/2025
“Withholding or suspending these funds would jeopardize that trust and hinder progress on critical health challenges facing our nation. Ultimately, this is about finding cures and seeing them through to fruition.” www.politico.com/news/2025/07...
politico.com
14 Republican senators urge White House to release delayed NIH funds
Sen. Katie Britt (R-Ala.) is leading the letter making the ask of OMB director Russ Vought.
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Brittany Trang @brittanytrang.com · 21/07/2025
NEW from me at STAT: We've learned that DeepMind is going to fund CASP, the protein structure competition that brought Google DeepMind's #AlphaFold to prominence (and a Nobel Prize), as its NIH funding runs out. More @statnews.com: www.statnews.com/2025/07/21/c... 🖥️🩺🧪🧬 #bioML
statnews.com
AlphaFold developer Google DeepMind to fund CASP as NIH funding falls short
Protein structure prediction contest CASP gets temporary funding from Google DeepMind as NIH grant runs out.
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Dr. Lucky Tran @luckytran.com · 08/07/2025
BREAKING: Scientists are staging a “science fair” in the lobby of a Congressional building to tell elected officials about the critical knowledge the US will lose because their research grants have been canceled.
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Jeremy Berg @jeremymberg.bsky.social · 08/07/2025
New hair-raising piece from CNN about the National Cancer Institute... www.cnn.com/2025/07/08/h...
cnn.com
World’s premier cancer institute faces crippling cuts and chaos | CNN
The Trump administration’s broadsides against scientific research have caused unprecedented upheaval at the National Cancer Institute, the storied federal government research hub that has spearheaded ...
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Jeremy Berg @jeremymberg.bsky.social · 23/04/2025
ACTION ITEM-----ACTION ITEM Implementation of Schedule F This is what a lot of us have been worried about. This allows for many civil service positions to replaced with political appointees. This could include NIH institute directors and even POs. BUT THERE IS A COMMENT PERIOD... 1/n
media.tenor.com
the word alert is in a purple circle
ALT: the word alert is in a purple circle
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Rommie Amaro @rommieamaro.bsky.social · 23/04/2025
🚨. I've been mostly off social media for a bit (mental health) but this is very important!!!!! Please comment and circulate to everyone you know for comments!!!
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Kimberly Prather PhD @kprather.bsky.social · 21/04/2025
Reminiscing about our Airborne Institute event last week. Having @carlzimmer.com attend & sign his book Air-borne made the day beyond extra special at UC San Diego. We are ready to take on airborne disease and push beyond the place the world has been stuck for 200+ years! @rommieamaro.bsky.social
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Politico @politico.com · 09/04/2025
Trump administration freezes $1B for Cornell, $790M for Northwestern.
politico.com
Trump administration freezes $1B for Cornell, $790M for Northwestern
Cornell is the sixth Ivy League institution to face a federal funding freeze.
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Compound Interest | Chemistry infographics @compoundchem.com · 07/04/2025
It's #NationalBeerDay 🍻 Enjoy some of the chemistry behind the brewing while you watch the markets slide 📉 www.compoundchem.com/2014/07/10/b... #ChemSky 🧪
Infographic on the chemistry of beer. The top of the graphic identifies the major stages of beer brewing: milling, mashing, brewing, cooling, fermenting, and maturing. The rest of the graphic identifies four key components of beer flavour: alpha acids, beta acids, essential oils and esters. Alpha acids degrade during brewing and form iso-alpha acids, which contribute bitterness. Humulone is the main alpha acid in the majority of hops. Beta acids also originate from hops and add a harsher bitterness than alpha acids. Essential oils contribute the majority of hop flavour and aroma, and there are over 250 found in hops. Esters form during the reaction of alcohol with organic acids, and give fruity flavours.
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Derek Lowe @dereklowe.bsky.social · 07/04/2025
More updates on what’s happening to federally funded US science. Roughly the same magic touch Trump has brought to world trade, actually. Today’s examples are on drug-resistant gonorrhea and vaccine approvals, both of which are going to hell.
science.org
The Continuing Crisis, Part XI: Feral Children, Breaking Things
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Kristian G. Andersen @kgandersen.bsky.social · 06/04/2025
Just as our new Public Health Lab - which was built on key lessons learned during COVID - was set to open, the necessary funding for its operation was just pulled by DOGE/HHS. That operation, critical to safety and public health in San Diego. Gone. www.sandiegouniontribune.com/2025/04/04/s...
sandiegouniontribune.com
San Diego to take a $40 million hit in federal funding for public health
Ninety-one grant-funded positions could be affected by cancellation of grants.
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Kristian G. Andersen @kgandersen.bsky.social · 07/04/2025
We were just notified that our contract to UCSD and Scripps Research to support wastewater surveillance in San Diego (searchcovid.info) was terminated immediately for the same reasons 👇. That means no more genomic wastewater surveillance, and our proposed extensions to measles, Hep A, others, gone.
searchcovid.info
Home - SEARCH
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Jeremy Berg @jeremymberg.bsky.social · 28/03/2025
Powerful new Washington Post story up... wapo.st/426d9fT (Gift link) 1/n
wapo.st
Trump promised scientific breakthroughs. Researchers say he’s breaking science.
NIH funding for biomedical research has abruptly fallen by billions of dollars, with many grant decisions on hold. Trump officials say they’re reviewing the agency.
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Rommie Amaro @rommieamaro.bsky.social · 29/03/2025
This is particularly awful The F awards are US biomedical workforce training awards Their agenda to destroy the future of biomedical science on full display here
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Martin Steinegger 🇺🇦 @martinsteinegger.bsky.social · 29/03/2025
Run BioEmu in Colab - just click "Runtime → Run all"! Our notebook uses ColabFold to generate MSAs, BioEmu to predict trajectories, and Foldseek to cluster conformations. Thanks @jjimenezluna.bsky.social for the help! 🌐 colab.research.google.com/github/sokry... 📄 www.biorxiv.org/content/10.1...
colab.research.google.com
Google Colab
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Craig Welch @craigwelch.bsky.social · 29/03/2025
Wow. California State University, UC-Berkeley, UC-Davis, UC-San Diego and U of SF are ALL urging foreign-born students, faculty and staff to reconsider international travel because there's no telling whether the Trump administration will allow them to re-enter. www.desertsun.com/story/news/n...
desertsun.com
Trump travel ban: California colleges urge international students to rethink travel plans
At least one university said it doesn't recommend international travel as a possible travel ban that could impact more than 40 countries looms.
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Kit Yates @kityates.bsky.social · 29/03/2025
Turns out a colander works pretty well for eclipse spotting. #SolarEclipse
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Stephen Curry @scurry.bsky.social · 29/03/2025
Peak occlusion at about 11:05 GMT. Light cloud, which gives a halo effect.
Partial solar eclipse - top right of Sun has a crescent shaped bite taken out of it.
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Stephanie Armour @stephaniearmour.bsky.social · 29/03/2025
Resignation letter from FDA’s Peter Marks (he was director of its Center for Biological Evaluation and Research)
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Miles W. Griffis @mileswgriffis.bsky.social · 28/03/2025
🚨 BREAKING: Long COVID research grants rescinded earlier this week have been restored, according to researchers & patient reps. Advocates organized quickly yesterday in response to the news, helping reverse the decision. Exclusive in @thesicktimes.bsky.social thesicktimes.org/2025/03/28/u...
thesicktimes.org
UPDATE: RECOVER Long COVID pathobiology grants restored - The Sick Times
Long COVID research grants from the National Institutes of Health’s RECOVER program will be restored following news stories about their abrupt cancellations and advocacy to restore the funding, accord...
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babs ✨ @itsbabs.bsky.social · 28/03/2025
NO TIME FOR FUTILITY, ACTION WORKS: “…studies now resuming include research into the pathobiology of LongCOVID in children, persistent SARSCoV2 viral reservoirs, vascular dysfunction, post-exertional malaise, reactivation of latent viruses like EpsteinBarr, & the link between SARSCoV2 & diabetes.”
"Good news! Today, the NYU business office received a notice from the NIH Office of Extramural Research stating that funding for Pathobiology awardees (first round) has been fully reinstated," wrote RECOVER investigator and New York University pediatrician Rachel Gross in an email shared with The Sick Times.
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Jeremy Berg @jeremymberg.bsky.social · 29/03/2025
You may have seen that the incoming NIH director and his buddies started a new journal, The Journal of the Academy of Public Health (One clue: There is no recognized Academy of Public Health) www.science.org/content/arti...
science.org
New journal co-founded by NIH nominee raises eyebrows, misinformation fears
The Journal of the Academy of Public Health claims to open up scientific communication. But its unusual editorial policies have some scientists concerned
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Chris Hayes @chrislhayes.bsky.social · 28/03/2025
He fired the black chairman of the joint chiefs for being woke and hired his brother.
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Charles Ornstein @charlesornstein.bsky.social · 28/03/2025
SCOOP: The CDC Buried a Measles Forecast That Stressed the Need for Vaccinations @sheinvestigates.bsky.social
propublica.org
The CDC Buried a Measles Forecast That Stressed the Need for Vaccinations
The move — along with the CDC’s explanation — is a sign that the nation’s top public health agency may be falling in line under HHS Secretary Robert F. Kennedy Jr., a longtime critic of vaccines.
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Eric Topol @erictopol.bsky.social · 29/03/2025
A huge loss at FDA. Peter Marks originated rhe Operation Warp Speed Covid vaccine idea and has overseen so many essential biotech programs such as genome editing cures www.wsj.com/politics/top...
wsj.com
Exclusive | Top Vaccine Official Out at FDA
In his resignation letter, Dr. Peter Marks cited ‘misinformation and lies’ from Health and Human Services Secretary RFK Jr.
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Carolyn Bertozzi @carolynbertozzi.bskyverified.social · 29/03/2025
Another epic #glycotime accomplishment from @rommieamaro.bsky.social and coworkers @UCSD
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Dan Diamond @ddiamond.bsky.social · 29/03/2025
Breaking: RFK Jr. has forced out PETER MARKS, the nation’s top vaccine regulator. In his resignation letter, obtained by the Post, Marks said he was willing to work with RFK Jr on his vaccine concerns — but said Kennedy wishes “subservient confirmation of his misinformation and lies.”
washingtonpost.com
RFK Jr. forces out Peter Marks, FDA’s top vaccine scientist
Marks, an architect of Operation Warp Speed, warned that a recent measles outbreak shows how confidence in science and public health is being “undermined.”
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Helen Branswell 🇨🇦 @helenbranswell.bsky.social · 28/03/2025
The Administration for Strategic Preparedness and Response — ASPR — has been caught in the crosshairs of RFK J's mass restructuring of #HHS. Sounds like ASPR's going one way, its BARDA division another. @owermohle.bsky.social reports. www.statnews.com/2025/03/28/h...
statnews.com
HHS emergency response unit given two days to figure out its fate
BARDA is being shifted into a new Office of Healthy Futures within HHS, two sources told STAT
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Bethany Halford @bethanyhalford.bsky.social · 28/03/2025
If you love drug candidates but weren't able to attend the #FirstTimeDisclosures symposium at #ACSSpring2025, check out my story about the session for @cenmag.bsky.social - with lots of cool-looking molecules. cen.acs.org/acs-news/acs...
cen.acs.org
12 drug candidates debut in San Diego
Structures unveiled during first-time disclosures symposium
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Dima Lupyan @newyorkdimka.bsky.social · 28/03/2025
The Free Energy Workshop (feworkshop.bsky.social) will happen on May 6-8th. If you're an unemployed #CompChem modeller or researcher and want to attend to network but cannot afford the $215 registration fee, please DM me.
feworkshop.bsky.social
Free Energy Workshop 2025 (@feworkshop.bsky.social)
Organizing the largest workshop concerning Free Energy calculations within the United States.
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Iain Wilson @iainwilsonwien.bsky.social · 27/03/2025
Handover of one GRC team to the next: thanks to Daniel Kolarich & Anne Imberty, who are succeeded as chairs by Elisa Fadda & Lance Wells! Excellent science in Barga! #GRCGlycobiology2025 @kolarich-glyco-lab.bsky.social @anneimb.bsky.social @elisafadda.bsky.social @docgatordawg1.bsky.social
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Chrystal Starbird @drstarbird.bsky.social · 27/03/2025
Just want to say again I’m grateful for the people doing their best to hold it down at the NIH despite the chaos and uncertainty. I see you 🙌🏾
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Jaweed Kaleem @jaweedkaleem.bsky.social · 28/03/2025
NEW: The Trump administration said tonight that it is investigating UCLA, Stanford, UC Berkeley and UC Irvine over alleged illegal use of race in admissions: www.latimes.com/california/s...
latimes.com
Justice Department probes major California universities for 'illegal DEI' in admissions
The Justice Department is investigating four California universities for possible 'illegal DEI' in admissions. The universities say they do not illegally consider race when accepting students.
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Needhi Bhalla 💅🏽 @needhibhalla.bsky.social · 28/03/2025
www.nytimes.com/2025/03/27/u...
nytimes.com
Top Senate Republican Protests Trump Bid to Withhold Spending
Senator Susan Collins of Maine, the chairwoman of the Appropriations Committee, joined top Democrats in insisting that the president does not have the power to “pick and choose” what to fund.
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Joshua Weitz @joshuasweitz.bsky.social · 28/03/2025
The NIH distributes approximately $37B in external grants/awards in FY 2024. These grants/awards have a force-magnifying effect, generating $2.56 of economic activity for each $1 supported, i.e., more than $94B in activity and more than 400K jobs www.unitedformedicalresearch.org/annual-econo...
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Rommie Amaro @rommieamaro.bsky.social · 28/03/2025
✨✨ It's #glycotime for #HIV Env ✨✨ N-linked glycans modulate flexibility & MPER epitope exposure #glycotime Huge effort by @shehata92.bsky.social @lcasalino88.bsky.social with cryoET of Env in VLPs by @thevillalab.bsky.social & team 💪 Would love feedback! www.biorxiv.org/content/10.1...
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Martina Maritan @martinamaritan.bsky.social · 28/03/2025
OpenAI’s new GPT-4o image generator is kind of mind-blowing, especially compared to what was state-of-the-art just days ago. Someone had to try the Ghibli trend on some crazy biology visuals, right? Here's my beloved whole cell model in Studio Ghibli, graffiti, cubism, abstract, and pop art style ✨
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Angie Rasmussen @angierasmussen.bsky.social · 27/03/2025
Want a short, accessible read about the current state of H5N1 bird flu? Florian Krammer, Enikö Hermann, and I wrote a short "gem" piece for the @asm.org Journal of Virology. journals.asm.org/doi/10.1128/...
journals.asm.org
Highly pathogenic avian influenza H5N1: history, current situation, and outlook | Journal of Virology
Influenza virus pandemics are caused by influenza A viruses and happen in irregular intervals (1). The H1N1 subtype caused a pandemic in 1918 that claimed between 20 and 50 million lives, followed by H2N2 in 1957 (1–4 million deaths), H3N2 in 1968 (1–4 million deaths), and another H1N1 pandemic in 2009 (approximately 280,000 deaths) (2, 3). Typically, after causing a pandemic, these viruses establish themselves in the human population and become seasonal influenza viruses. Currently, H1N1 and H3N2 (as well as influenza B viruses) are circulating as seasonal influenza viruses in humans and cause millions of severe infections and up to 650,000 deaths per year globally (4). In addition, highly pathogenic avian influenza (HPAI) of the H5N1 subtype has caused a panzootic in birds since 2021, devastating poultry production around the world as well as infecting multiple mammalian host species. An outbreak in US dairy cattle has resulted in thousands of cows infected across 16 states, with subsequent spillback to birds and spillover to other mammals. Human H5N1 infections have concurrently increased, as exposures to infected animals have become more frequent. The risk of an H5N1 influenza pandemic continues to grow.
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Will Guisbond @willguisbond.com · 27/03/2025
STUNNING: Sen. Cruz said that the faulty TCAS warnings received at DCA in March were due to "the Secret Service and the US Navy improperly testing counter drone technology," on "the same spectrum band as TCAS" at that time. Acting FAA Administrator Chris Rocheleau confirmed this.
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