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Phil Ross

@philippzross.com
567 followers 544 following 142 posts

Vaccine scientist at ArkeaBio | Biologically inspired design for a better planet | Runner and anime enthusiast

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Reposted by Phil Ross
Harmit Singh Malik @harmitmalik.bsky.social · 05/09/2026
The current NIH Director’s animus against NIAID to sign away much needed research funds so we can continue bombing another country is… a staggering betrayal of Congressional intentions and authority. Not surprising but still staggering.
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Katie Prout @katieprout.bsky.social · 26/08/2026
If you have a podcast related to Chicago specifically, Illinois generally, that has recently come out or is on the horizon, I'm interested in knowing about it: kprout@chicagoreader.com.
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Phil Ross @philippzross.com · 19/08/2026
@devoevomed.bsky.social just reread Oryx and Crake after a long in between. Still so good and probably even more pertinent now!
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Phil Ross @philippzross.com · 14/08/2026
Feels like something @devoevomed.bsky.social should know about: www.science.org/doi/10.1126/...
science.org
Reassessing the role of progesterone receptor isoforms PGR-A and PGR-B in female fertility
Progesterone is a critical reproductive hormone that acts via progesterone receptor transcriptional regulators. The short PGR-A isoform lacks a 164–amino acid amino-terminal region present in PGR-B th...
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Derek Lowe @dereklowe.bsky.social · 23/07/2026
Carl’s thread here is a much more detailed version of what I said today on the blog - bringing the receipts!
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Sven T. Stripp @stripplab.bsky.social · 06/07/2026
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Nick Polizzi @nickpolizzi.bsky.social · 26/06/2026
Our lab's paper on the de novo design of small-molecule binding proteins is out! In it, we show how neural nets can be trained and used to design binders to drugs with very high success rates. www.nature.com/articles/s41...
nature.com
Zero-shot design of drug-binding proteins via neural iterative selection−expansion - Nature
 By pairing two neural networks in an iterative optimization algorithm, small-molecule binding proteins can be designed from scratch with high accuracy, affinity and success rates, showing p...
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Mike Feigin 🥯 @mikefeigin.bsky.social · 14/06/2026
This is how I’m ending my seminars from now on.
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David Ho @davidho.bsky.social · 19/04/2026
Vaccines are humanity’s greatest scientific achievement.
bbc.co.uk
Pregnancy vaccine reduces baby hospital admissions for RSV by 80%
A study confirms the vaccine gives excellent protection for babies against life-threatening chest infections.
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Phil Ross @philippzross.com · 17/04/2026
Tips are helpful, but I think the headline misses the point (again). Time flexibility is the best part of a PhD. Some people work more, some people less. All that should matter is the output and whether students are sufficiently trained. Upper time caps needed cuz $ www.nature.com/articles/d41...
nature.com
The nine-to-five PhD: mere myth or an achievable goal?
Can you squeeze your graduate programme into a 40-hour working week? These 13 current and former PhD candidates reveal their top time-management tips.
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RCSB Protein Data Bank @rcsbpdb.bsky.social · 04/04/2026
Meet the Microbes That Munch Mountains of Mining Waste Biomining uses engineered microbes to harvest critical minerals
scientificamerican.com
Engineered Microbes Pull Critical Minerals from Mining Waste
Biomining uses engineered microbes to harvest critical minerals
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DrArchivalGenomics @ehekkala.bsky.social · 31/03/2026
🌏🧪😡👎
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Phil Ross @philippzross.com · 30/03/2026
Didn't realize SCoV2 spike protein interacts with so many cell-surface receptors. Interesting that it appears to requires ACE2 for cell entry, but binds better to CNTN1. www.biorxiv.org/content/10.6...
biorxiv.org
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Phil Ross @philippzross.com · 26/03/2026
"survival of the fittest" != "objectively best organisms survive" the same way that "if your discoveries were worth something, they’d be funded by the market" doesn't make any fucking sense...
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Dmitri Petrov @petrovadmitri.bsky.social · 24/03/2026
A question for biologists: we often talk about evolutionary novelty. What does “novelty” mean for you? What’s your favorite definition if any? Or just a rule of thumb for what is and isn’t novel.
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Phil Ross @philippzross.com · 12/03/2026
“Take AI seriously, but not everything that’s written about it” open.spotify.com/episode/6PN2...
open.spotify.com
AI Reality Check: Is the Economy About to Collapse?
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Phil Ross @philippzross.com · 07/03/2026
#Caturday
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Phil Ross @philippzross.com · 20/02/2026
Protein crystals next?!? www.nature.com/articles/s41...
nature.com
Harnessing microalgae for the biosynthesis of molecular crystals - Nature Biotechnology
Crystalline materials for optical applications are synthesized in living dinoflagellates.
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Carl Zimmer @carlzimmer.com · 18/02/2026
Scientists have seen Asgard archaea crawling for the first time. When it comes to the origin of eukaryotes, this is like seeing a feathered dinosaur in the wild. (Video courtesy of Philipp Ralder)
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Phil Ross @philippzross.com · 15/02/2026
www.profgalloway.com/role-models/
profgalloway.com
Role Models | No Mercy / No Malice
“Society grows great when old men plant trees whose shade they’ll never sit under.” There’s an inverse to that wisdom. Great societies decline when old men chop down forests meant to provide shade and...
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Andrew Plested @andrewplested.bsky.social · 07/01/2026
What a breakthrough! Such a puzzle for 30 years, this is real progress! I wonder how general this mechanism of repression is for other systems where highly-selective expression is needed. www.biorxiv.org/content/10.6...
biorxiv.org
The transcription of a single olfactory receptor per neuron is enforced by epigenetic silencing of their enhancers
The ability to discriminate thousands of odors in our environment requires each olfactory neuron to express a single olfactory receptor from hundreds of available genes. The biochemical mechanism enfo...
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Leonie Moyle @speciationlab.bsky.social · 14/10/2025
Great new postdoc fellowship for foundational plant research. If you’re into genetics and genomics of plant reproductive evolution or adaptive convergence (incl in the cool and charismatic nightshades!) I’d be happy to talk about possible projects! www.simonsfoundation.org/grant/simons...
simonsfoundation.org
Simons Postdoctoral Fellowships in Plant Biology
Simons Postdoctoral Fellowships in Plant Biology on Simons Foundation
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Yehlin Cho @yehlincho.bsky.social · 13/10/2025
Thrilled to announce our new preprint, “Protein Hunter: Exploiting Structure Hallucination within Diffusion for Protein Design,” in collaboration with @Griffin, @GBhardwaj8 and @sokrypton.org 🧬Code and notebooks will be released by the end of this week. 🎧Golden- Kpop Demon Hunters
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Maddy Seale @maddyseale.bsky.social · 07/10/2025
Out First Release in @science.org this week: The development of a directed evolution strategy with proof of concept in plant immune protein engineering. www.science.org/doi/10.1126/...
science.org
Engineered geminivirus replicons enable rapid in planta directed evolution
Directed evolution can rapidly generate genetic variants with new and enhanced properties, yet efficient platforms for performing such evolution directly in plant cells have been lacking. We developed...
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Carl Zimmer @carlzimmer.com · 02/09/2025
Yesterday the president demanded that evidence about Covid vaccines be shown to the public. Today @apoorvanyt.bsky.social & I run through some of the studies made public over the past 4+ years that show that the vaccines work. Gift link: nyti.ms/46k17Tq
nyti.ms
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Phil Ross @philippzross.com · 02/09/2025
I feel this open.substack.com/pub/experime...
open.substack.com
Use this magic bullet to shoot yourself in the foot
OR: Borg vibes
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Nick Polizzi @nickpolizzi.bsky.social · 19/08/2025
Interested in doing a postdoc at DFCI/Harvard on computationally designing and experimentally characterizing mini-protein binders for biomedical applications? Eric Fischer and I are looking for someone to work in our groups starting asap! Email me or my admin with a CV to apply!
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Nick Desnoyer @nickdesnoyer.bsky.social · 11/08/2025
Introducing the 1,000 Flower Collection 🧬🌹 I’m creating 1,000 genetically designed flowers each crafted with new colors, patterns, and shapes. Here’s how I’m making it happen… and how you can join me on this journey 🧵(1/7)
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Steven Robbins @stevenjrobbins.bsky.social · 21/05/2025
Very excited to present the Great Barrier Reef Microbial Genomes Database (GBR-MGD), a comprehensive DB of 1000s of high-quality prokaryote, virus, plasmid, and chromosome-level eukaryote MAGs using Nanopore long reads. Subthreads incoming. Please share widely. 🙂 www.biorxiv.org/content/10.1...
biorxiv.org
The planktonic microbiome of the Great Barrier Reef
Large genome databases have markedly improved our understanding of marine microorganisms. Although these resources have focused on prokaryotes, genomes from many dominant marine lineages, such as Pela...
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James Fraser @fraserlab.com · 20/05/2025
We are looking to hire (yes, even in this economy!) a jr. specialist to train in protein prep/structural biology related to our AVOID-ome work as part of openadmet.org. A great position for someone who is looking to be a tech for a few years before grad or med school. aprecruit.ucsf.edu/JPF05424
aprecruit.ucsf.edu
Junior/Assistant/Associate/Full Specialist Positions Available
University of California, San Francisco is hiring. Apply now!
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Phil Ross @philippzross.com · 12/05/2025
Definitely one of my favorite things to learn recently: sweet proteins! And that companies like Oobli and Amai already exist
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Phil Ross @philippzross.com · 10/05/2025
I remember having a drunken argument with @boughter.bsky.social over whether you focus efforts on exploring the earth's oceans or space first and I feel somewhat validated by this 😅 www.science.org/doi/10.1126/...
science.org
How little we’ve seen: A visual coverage estimate of the deep seafloor
In decades of deep-sea exploration, humans have observed only 0.001% of the deep seafloor, leaving 66% of planet Earth unseen.
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Phil Ross @philippzross.com · 09/05/2025
Always a good day when I find out a new sensory receptor structure has been published! www.cell.com/cell/fulltex...
cell.com
The structure of human sweetness
A single taste receptor initiates our reactions to both sugars and artificial sweeteners, triggering a signaling process that drives our intense attraction to sweet foods. Single-particle cryo-EM reve...
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Nick Polizzi @nickpolizzi.bsky.social · 28/04/2025
Super excited to share a new preprint from our lab on design of small-molecule binding proteins using neural networks! The paper has a bit of everything. A new graph neural network, new design algorithms, and experimental validation. www.biorxiv.org/content/10.1... 🧵🧪
biorxiv.org
Zero-shot design of drug-binding proteins via neural selection-expansion
Computational design of molecular recognition remains challenging despite advances in deep learning. The design of proteins that bind to small molecules has been particularly difficult because it requ...
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Stephen Turner @stephenturner.us · 12/04/2025
On the ancestry and evolution of the extinct dire wolf 🐺 www.biorxiv.org/content/10.1... 🧬🖥️🧪 Sequencing data: www.ncbi.nlm.nih.gov/bioproject/P...
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Phil Ross @philippzross.com · 27/03/2025
What a joke.
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Jeremy Berg @jeremymberg.bsky.social · 16/02/2025
Some glimmers of hope (but mostly confusion) this morning. I have heard that no intramural tenure track investigators were supposed to be on the termination list although some folks clearly got termination notices. I am actively checking into this every way I can. 1/2
media.tenor.com
a picture of a pikachu with the words " i still have hope " written below it
ALT: a picture of a pikachu with the words " i still have hope " written below it
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Jeremy Berg @jeremymberg.bsky.social · 16/02/2025
Thanks to all of the NIHers and their friends who reached out to me. I am still here (DM me or Signal jeremymberg.78) I still have a very incomplete picture but based on what I have been told, the damage to NIH and to many wonderful people who work(ed) there is/was impossible for me to imagine 1/n
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Phil Ross @philippzross.com · 06/02/2025
This feels not only pertinent to me personally, but also to the current happenings in the federal government. But I’m trying to figure out: is the current administration viewing the government as a strong or weak link problem? www.experimental-history.com/p/repost-sci...
experimental-history.com
REPOST: Science is a strong-link problem
OR: How to eat fewer asparagus beetles
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Harmit Singh Malik @harmitmalik.bsky.social · 28/01/2025
If you have been affected by the fires in LA, or are concerned about your ability to keep precious Drosophila strains going during the latest funding crisis, we will host your strains as a backup. Please email me. Please amplify. If you are also able to host fly strains, add your name as well.
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Stephanie Wankowicz @stephanieaw.bsky.social · 21/01/2025
This, my dear is the greatest challenge to being alive. To witness injustice in the world and to not allow it to consume our light. Thich Nhat Hahn
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Oded Rechavi @odedrechavi.bsky.social · 19/01/2025
"An Intuitive Primer on Effective Functional Genomics Study Design" - Check out @ygilad.bsky.social 's new text book! a.co/d/1bpE1zV
a.co
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BWJones @bwjones.bsky.social · 05/01/2025
I’m just remembering when companies sued kids for millions of dollars for sharing a few songs online. Now big business is saying they can’t stay in business without stealing everyone’s copyright.
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Phil Ross @philippzross.com · 04/01/2025
Just rewatched this great talk by Andy Dunn and wish more people thought this way about entrepreneurs and leaders in general
ted.com
Andy Dunn: Lessons from losing my mind
Neurodiversity and innovation often go hand in hand, but does that mean visionary entrepreneurs get a free pass to say and do anything they want? Bonobos founder and mental health advocate Andy Dunn s...
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Phil Ross @philippzross.com · 20/12/2024
Thrilled to finally share a manuscript from PhD work @UChicagoBMB all about peptides, protein structures, MHCs, and KIRs, inspired by a cool evolutionary backstory. Fun project started with @chaaawie, who was actually the first to teach me how to purify proteins! www.biorxiv.org/content/10.1...
biorxiv.org
Molecular characterization of the archaic HLA-B*73:01 allele reveals presentation of a unique peptidome and skewed engagement by KIR2DL2
HLA class I alleles of archaic origin may have been retained in modern humans because they provide immunity against diseases to which archaic humans had evolved resistance. According to this model, ar...
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Carl Zimmer @carlzimmer.com · 03/12/2024
I know there's so much news to track at the moment, but let me add some important science to the list: "An unknown disease killed 143 people in a south-west province of Democratic Republic of the Congo in November." www.theguardian.com/world/2024/d...
theguardian.com
Unknown disease kills 143 people in south-west DRC, local authorities say
Infected people described as having flu-like symptoms including high fever and severe headaches
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Phil Ross @philippzross.com · 05/12/2024
Well shit
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Ran Blekhman @blekhman.bsky.social · 03/12/2024
This keeps coming up, and I think there is ambiguity in the field that is really not helpful. So to be clear, based on my knowledge and experience in microbiome research, I am confident that there is no such thing as a "brain microbiome" www.theguardian.com/lifeandstyle... 1/2
theguardian.com
The brain microbiome: could understanding it help prevent dementia?
Long thought to be sterile, our brains are now believed to harbour all sorts of micro-organisms, from bacteria to fungi. How big a part do they play in Alzheimer’s and similar diseases?
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Jake Wintermute @synbio1.bsky.social · 02/12/2024
Boston-area locals! Join me and your new best biotech friends this Thursday, December 5 @ 5:30 for Engineering Biology Club! Jesse Cochrane, formerly of Tome Biosciences, will be talking about gene editors. Sign up here to attend: www.ginkgobioworks.com/learn/engine...
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