Sign in

Oscar Silva

@oscar-silva.bsky.social
591 followers 525 following 343 posts
PostsRepliesMedia
Reposted by Oscar Silva
Gustavo Acosta @cyber_gusy @cybergusy.bsky.social · 10h
Las izquierdas siempre tienen algo que las derechas nunca tendrán: diseño. Y más en la época del techno-facismo donde la IA es la que les hace unos diseños y videos feísimos a las derechas. Bora Lula
021
Reposted by Oscar Silva
Working Class History @workingclasshistory.com · 02/10/2026
#OtD 2 Oct 1968 the Tlatelolco massacre took place in Mexico City when police murdered hundreds of students demonstrating peacefully, just prior to the start of the Olympic Games in the city stories.workingclasshistory.com/article/9228...
15323
Reposted by Oscar Silva
Mark Bitter @markcbitter.bsky.social · 01/10/2026
New Perspective w/ @petrovadmitri.bsky.social and Paul Schmidt! We ask what evolution-in-action studies tell us about an old question: what genetic variation matters for fitness, and what maintains it? ecoevorxiv.org/repository/v...
ecoevorxiv.org
Common, consequential, and actively maintained: a neo-balance view of genetic variation
14126
Oscar Silva @oscar-silva.bsky.social · 30/09/2026
www.nature.com/articles/s41...
nature.com
Developmental contexts of gene-regulatory evolution following whole genome duplication in salmonids - Nature Ecology & Evolution
A comparative analysis of multiomics data from embryonic and adult tissues of Atlantic salmon and rainbow trout reveals developmental and tissue-specific constraints shaping regulatory evolution follo...
000
Reposted by Oscar Silva
Chemistry World @chemistryworld.com · 30/09/2026
‘How, after all, can replicators make copies without something to power that process?’, asks Phil Ball in his latest for Chemistry World. Read here: @philipcball.bsky.social #ChemSky www.chemistryworld.com/opinion/auto...
chemistryworld.com
Autocatalytic networks could lie at the beginning of evolution
New modelling suggests how compartmentalised cross-catalysing networks can evolve adaptations that are passed on through chemical states
051
Reposted by Oscar Silva
bioRxiv Evolutionary Biology @biorxiv-evobio.bsky.social · 30/09/2026
On the mapping between evolutionary scenarios and governing rules in state-dependent speciation-extinction models www.biorxiv.org/content/10.64898/20…
021
Reposted by Oscar Silva
Josef Uyeda @pseudacris.bsky.social · 29/09/2026
New preprint led by grad student Caleb Charpentier that I'm very excited about! This is a hefty review & perspective on how we can close the gap in trust between new "Deep comparative methods", and the biological meaning & inferences that systematists want. ecoevorxiv.org/repository/v...
ecoevorxiv.org
On the Promise (and Practice) of Deep Comparative Methods: Expressivity, Limitations, and Design
21713
Reposted by Oscar Silva
Andrej Spiridonov @andrejpaleo.bsky.social · 29/09/2026
Dynamical [chemical] systems view on the emergence of heredity in evolution: "This paper proposes that early chemical systems could preserve and pass on differences through stable chemical states rather than through stored sequences like DNA or RNA" www.pnas.org/doi/10.1073/... 🧪 #Complexity #EvoBio
Behavior of compartments in environments selecting for different autocatalyst composition.
0177
Oscar Silva @oscar-silva.bsky.social · 29/09/2026
www.nature.com/articles/s44...
nature.com
Evolution by natural selection can be complex yet predictable - Nature Reviews Biodiversity
Evolution by natural selection is a well-evidenced and well-understood process, but predicting the course that it will take in the future is less clear. In this Perspective, Nosil and Gompert argue th...
001
Reposted by Oscar Silva
📑 EvoDevo Papers @evodevo-papers.bsky.social · 29/09/2026
Directional Internal Selection onlinelibrary.wiley.com/doi/10.1002… #EvoDevo
022
Reposted by Oscar Silva
epithelial mechanics fan club @epimechfc.bsky.social · 27/09/2026
Can mathematics explain how biological patterns are formed? Alan Turing thought so. Join me, @benswedlund.bsky.social , as we explore his reaction-diffusion theory and how it transformed our understanding of pattern formation and self-organisation.
0149
Reposted by Oscar Silva
📑 EvoDevo Papers @evodevo-papers.bsky.social · 27/09/2026
The evolution of novel floral organs from an evo-devo perspective pubmed.ncbi.nlm.nih.gov/42799330 #EvoDevo
041
Oscar Silva @oscar-silva.bsky.social · 27/09/2026
El argumento que muchos votantes de partidos de extrema derecha en Europa dan para justificar su elección es que están “cansados de no poder expresar su orgullo nacional”. Por lo general, la “expresión del orgullo nacional“ luce así:
001
Reposted by Oscar Silva
Plant Science Spotlight @plant-sci.bsky.social · 25/09/2026
🌱🧬Plant defense chemicals serve more than defense. Non-defense functions arise via pleiotropy, shared regulation or correlated selection, shaping genetic constraints Understanding their evolution requires linking multifunctionality to genetics & selection nph.onlinelibrary.wiley.com/doi/10.1111/...
nph.onlinelibrary.wiley.com
Nondefense functions of plant specialized metabolites: ecological phenomena, molecular mechanisms, and evolutionary implications
Nonexhaustive overview of empirically validated nondefense functions caused by or correlated with variation in four well-studied classes of plant specialized metabolites (PSMs) – glucosinolates (gree...
054
Reposted by Oscar Silva
Ricard Solé @ricardsole.bsky.social · 24/09/2026
What if the origin of life was not a single transition, but a cascade of them? This paper by J. Aguirre & co offers a systems view of how complexity may have emerged across chemical, informational & ecological levels. @manlius.bsky.social @brionesci.bsky.social www.sciencedirect.com/science/arti...
1285
Reposted by Oscar Silva
Brian J. Enquist @bjenquist.bsky.social · 23/09/2026
A good reminder "Data science" isn't Science..."Without models, mathematical or conceptual, data are just noise...science advances only if it can provide explanations...there is an area where petabytes of information can be used...But don't call it science" link.springer.com/article/10.1... 🧪🌐
link.springer.com
The end of theory in science? - EMBO Reports
EMBO Reports -
45516
Reposted by Oscar Silva
Sasha (Alexandra) Khristich @khristich.bsky.social · 22/09/2026
I’m excited to share our preprint with @oliviamghosh.bsky.social, where we explore what it takes to ‘win’ in long-term evolutionary competition: www.biorxiv.org/content/10.1...
biorxiv.org
Adaptive evolution can overwrite initial natural fitness variation only in highest-fitness yeast isolates
The fitness of an organism determines its likelihood of succeeding in short-term competition, but many other factors can influence its long-term success. In this study, we investigate the relative con...
13929
Reposted by Oscar Silva
New Phytologist @newphyt.bsky.social · 21/09/2026
Adaptation in mixed-ploidy populations Grünig et al. nph.onlinelibrary.wiley.com/doi/10.1111/...
Distribution of genomic variation in diploid and tetraploid populations of Biscutella laevigata from low and high elevation.
053
Reposted by Oscar Silva
Molecular Biology and Evolution @molbioevol.bsky.social · 25/08/2026
Gaut et al. synthesize key lessons and outstanding challenges concerning the action of natural selection on plant genomes, revealing the power and some of the limits of population genomics to infer the dynamics of selection on plant genomes. 🔗 academic.oup.com/mbe/article/... #societyjournal
11310
Reposted by Oscar Silva
Petra Levin @redrockcity.bsky.social · 19/09/2026
4 years (!) in the making, in this review Jade Wang and I detail the fundamental processes underlying growth, the cell autonomous nature of homeostatic control, and the contribution of stochasticity to both. TL;DR Bacteria are more like teenagers than you think. www.nature.com/articles/s41...
nature.com
Bacterial growth rate in populations and single cells - Nature Microbiology
In this Perspective, Levin and Wang give a brief history of bacterial growth rate and discuss how it is connected to nutrient availability and macromolecule synthesis, with a focus on (p)ppGpp as a ce...
17430
Reposted by Oscar Silva
Sandra Álvarez @sabifo4.bsky.social · 08/09/2026
Keen on learning how to use Bayesian model selection to test different hypotheses of diversification? 🦴🧬🕰️ Check our latest work in Molecular Biology and Evolution! academic.oup.com/mbe/article/... With @zihengyang.bsky.social, @phil-donoghue.bsky.social, and @mariodosreis.bsky.social 💫 (1/2)
academic.oup.com
On the origin of animals and placental mammals: a critique of literalist readings of the fossil record
Abstract. The fossil record is incomplete, as evidenced by the pervasive presence of ghost lineages throughout the Tree of Life. For example, across placen
13923
Oscar Silva @oscar-silva.bsky.social · 19/09/2026
www.theguardian.com/science/ng-i...
theguardian.com
‘A map is never neutral’: meet the cartographers who took on centuries of western bias
Equal Earth projection, adopted by the UN last week, provides an alternative to 16th-century Mercator display
010
Reposted by Oscar Silva
📑 EvoDevo Papers @evodevo-papers.bsky.social · 19/09/2026
Mechanisms of Phenotypic Evolution from Molecules to Organisms: Integrating Evolutionary Biochemistry and Evolutionary Developmental Biology pubmed.ncbi.nlm.nih.gov/42751651 #EvoDevo
084
Reposted by Oscar Silva
agenciasinc.es @agenciasinc.es · 18/09/2026
Tres de los mayores expertos españoles en IA advierten de que el discurso apocalíptico sobre la superinteligencia y el “riesgo de extinción” sirve como cortina de humo para ocultar problemas reales e inmediatos de la tecnología
agenciasinc.es
Distracción, ‘marketing’ y cero responsabilidades: expertos analizan los verdaderos riesgos tras el pánico por la IA
Tres de los mayores expertos españoles en inteligencia artificial advierten de que el discurso apocalíptico sobre la superinteligencia y el “riesgo de extinción” sirve como cortina de humo para oculta...
03137
Reposted by Oscar Silva
Daohan "Rex" Jiang @rexjiang.bsky.social · 18/09/2026
New work from my former labmate Mark Kim on the origin of multicellularity. www.biorxiv.org/content/10.6...
biorxiv.org
Unicellular and Multicellular Modes of Selection Impose Distinct Constraints on Cellular Phenotype Evolution
Single-cell sequencing data have revealed that cellular phenotypes, such as gene expression states, are often low-dimensional, suggesting that cellular variation may arise from combinations of a small...
031
Reposted by Oscar Silva
Genetics Society of America @genetics-gsa.bsky.social · 17/09/2026
🧬🌱 Using QTL mapping, a new study characterizes #Sorghum diploid and tetraploid interspecific families to understand how polyploid-derived chromosomes behave when returned to diploidy. Find out more in the September issue of #G3journal 🔗 buff.ly/BpWEuP8
022
Reposted by Oscar Silva
Rob Waterhouse @rmwaterhouse.bsky.social · 17/09/2026
Today in @ergabiodiv.bsky.social Sequencing & Assembly Committee meeting with a presentation from Dmitry Antipov! TTT www.sciencedirect.com/science/article/pii/S2666979X26001850 - Automatic generation of model sequences for complex regions in assembly graphs with TTT #biodiveristy #genomics
sciencedirect.com
043
Reposted by Oscar Silva
Working Class History @workingclasshistory.com · 16/09/2026
#OtD 16 Sep 1973 Chilean communist folk singer and musician Victor Jara was murdered by Pinochet's troops following his US-backed coup a few days before. He was brutally tortured and shot over 40 times in the Chile Stadium stories.workingclasshistory.com/article/8846...
312969
Reposted by Oscar Silva
Working Class History @workingclasshistory.com · 16/09/2026
#OtD 16 Sep 1874 (or 1873) Mexican anarchist communist Ricardo Flores Magón was born in an Indigenous Mazatec community in Oaxaca. He was one of the major thinkers of and activists in the Mexican revolution stories.workingclasshistory.com/article/8835...
111036
Reposted by Oscar Silva
Systematics Association @systassn.bsky.social · 15/09/2026
Join us Nov 13th for #YSF2026, a completely free, online conference where postgraduate students (and other early career researchers) present their work on systematics, taxonomy and/or phylogenetics. Abstract submission closes Oct 24th! REGISTER: tinyurl.com/bdzxt2ht systass.org/young-system...
tinyurl.com
YSF2026 Registration Form
Welcome to the YSF2026 Registration and Abstract Submission form. This year the conference will be held online on Friday, November 13th 2026. We look forward to seeing old and new faces from across t...
067
Reposted by Oscar Silva
bioRxiv Evolutionary Biology @biorxiv-evobio.bsky.social · 17/09/2026
An explicit birth-death-reticulation model for studying the diversification of phylogenetic networks www.biorxiv.org/content/10.64898/20…
032
Reposted by Oscar Silva
Ed Yong is offline @edyong209.bsky.social · 17/09/2026
Briefly popping my head back in to unveil the cover of my upcoming book, LIFE BEYOND MEASURE: Nature's Hidden Wonders at Every Scale. It’ll be out on April 6 in the U.S. and April 29 in the U.K. and you can pre-order it right now! www.penguinrandomhouse.com/books/757705... 1/
A book cover featuring a beautiful closely cropped portrait of an Anna's hummingbird. The cover says LIFE BEYOND MEASURE: Nature's Hidden Wonders at Every Scale, by Ed Yong. The image also says US: 4/06/27 and UK: 4/29/27
271618359
Reposted by Oscar Silva
Trends in Genetics @cp-trendsgenetics.bsky.social · 08/09/2026
"The Study of Evolvability in Gene Regulatory Networks" by Alger Jorritsma, Aaron Kiggen, Steven Van Belleghem, & Pieter van den Berg FREE till Oct 27th at authors.elsevier.com/a/1nkTMcQbJI...
065
Oscar Silva @oscar-silva.bsky.social · 16/09/2026
Es cierto que el equipo aéreo, naval y terrestre de las fuerzas armadas de México pide a gritos por su reposo en el museo; pero no olvidemos que su función no es resistir una intervención extranjera, sino la contrainsurgencia*. *Y dar pena en cada desfile militar del 16 de septiembre.
110
Reposted by Oscar Silva
Harim B. Gutiérrez @harimbgutierrez.bsky.social · 16/09/2026
1- 🧵No fue don Porfirio Díaz, no fue Maximiliano de Habsburgo; el iniciador de la tradición de celebrar el grito de Independencia fue don Ignacio López Rayón. repositorio.inah.gob.mx/o-7016
repositorio.inah.gob.mx
Ignacio López Rayón.
1119
Reposted by Oscar Silva
British Journal for the Philosophy of Science @thebjps.bsky.social · 14/09/2026
From the new issue: Interpretative Models and the Biological Significance of Fisher’s Fundamental Theorem of Natural Selection – Zhixiang Cheng Abstract in alt text or read it here: www.journals.uchicago.edu/doi/10.1086/... #philsci #philsky
ABSTRACT. This article addresses the ongoing controversy over the biological significance of Fisher’s fundamental theorem of natural selection. The differences and commonality between the modern and traditional interpretations of the theorem are presented. I argue that both the traditional and modern assessments are implicitly guided by a bipartite, ‘laws of nature–world’ framework, which has constituted a hindrance to properly appreciating the biological significance of the theorem. Instead of approaching it as if it were a standalone empirical law of nature, we had better adopt a tripartite, ‘theory–model–world’ framework and consider the theorem as a product of a special kind of ideal ‘interpretative model’. By doing so, and by comparing the corresponding interpretative model with two other ones of different kinds, we could reach a better characterization of the significance of the theorem.
054
Reposted by Oscar Silva
in silico Plants @insilicoplants.bsky.social · 15/09/2026
🧬 Comparative analysis of gene regulatory networks identifies conserved regulators in seed plants by @donat.bsky.social and @andreabraeutigam.bsky.social buff.ly/O5G8I3I #PlantScience #genetics #model
doi.org
Validate User
Abstract. Gene regulatory networks (GRNs) based on transcription factors (TFs) control development and environmental responses. In this study, GRNs were in
053
Reposted by Oscar Silva
Plant Science Spotlight @plant-sci.bsky.social · 11/09/2026
🌱🧬Single-cell & spatial omics reveal cellular heterogeneity in plants but data integration & interpretation remain challenging Embedding these data in evolutionary models & moving from atlases to mechanisms could unlock their potential for crop improvement #plantsci academic.oup.com/plcell/artic...
academic.oup.com
Decoding plants cell by cell: opportunities and challenges in single-cell and spatial biology
Single-cell and spatial biology techniques present new opportunities for plant research but also come with methodological considerations, technical limitat
1115
Reposted by Oscar Silva
Joelle Lafond, PhD @joellelafond.bsky.social · 08/09/2026
🚨Our new preprint is out! 🤩 🌟 Mutation rates vary widely across taxa, and decades of research have sought to explain why. ♀️♂️ Reproductive modes, and evolutionary shifts between them, could help explain some of this variation. ❓ So what does the evidence tell us? 👀 Read our preprint to find out!
doi.org
Reproductive mode and the evolution of mutation rate
11713
Reposted by Oscar Silva
Working Class History @workingclasshistory.com · 14/09/2026
#OtD 14 Sep 1867 volume one of Karl Marx's Capital first appeared in Germany. Since then it has been studied widely by workers around the world wanting to understand capitalism. While long, it is definitely worth reading for all working-class militants stories.workingclasshistory.com/article/8625...
06629
Oscar Silva @oscar-silva.bsky.social · 14/09/2026
www.pnas.org/doi/10.1073/...
pnas.org
Rethinking the origin of life at seafloor hydrothermal vents | PNAS
Alkaline vents have dominated a class of hypotheses for the origins of life since their discovery a quarter of century ago, but advances in underst...
000
Reposted by Oscar Silva
Evgenii Protasov @evgenii-protasov.bsky.social · 10/09/2026
Eras of bioinformatics technologies from command-line interfaces to artificial intelligence (AI) chatbots #bioinformatics #AI #MicroSky doi.org/10.1093/bib/...
doi.org
Eras of bioinformatics technologies from command-line interfaces to artificial intelligence (AI) chatbots
Abstract. Over the past 75 years, especially the recent quarter century, bioinformatics has undergone a profound transformation, evolving from a specialize
011
Reposted by Oscar Silva
Chuliang Song @clsong.com · 10/09/2026
A wonderful review by Stefano on 100 years of Lotka–Volterra models. Don’t miss the incredibly detailed Supplement, truly the “War and Peace” of LV models. I really wish it had existed when I was a grad student! doi.org/10.1146/annu...
doi.org
One Hundred Years of Lotka–Volterra Models
Over the past century, the generalized Lotka–Volterra (GLV) model has grown from a mathematical curiosity to a cornerstone of theoretical ecology. Here we celebrate the enduring legacy of Lotka and Vo...
08337
Reposted by Oscar Silva
Chuliang Song @clsong.com · 04/09/2026
Very grateful to the editorial board for the opportunity to write about a topic I care deeply about. This review is deliberately opinionated, a personal view of where theory in community ecology stands and where it might go next. Pushback and disagreement are very welcome! doi.org/10.1146/annu...
doi.org
Toward a Conceptual Commons for Theory in Community Ecology
Community ecology has developed a rich and increasingly diverse body of theory, but its rapid expansion has outpaced efforts to compare and synthesize competing frameworks. As a result, semantic ambig...
15213
Reposted by Oscar Silva
chris shambaugh @cshambaugh.bsky.social · 12/09/2026
Very excited for this guide to the history of Darwinian evolutionary biology from David Depew. It sheds great light on the creative power of natural selection, while offering characteristically insightful analyses of Darwinism's profound implications for science, society, philosophy, and politics.
cambridge.org
Darwinism
Cambridge Core - Philosophy of Science - Darwinism
0174
Reposted by Oscar Silva
Profesor Ego (Maik Civeira) @maikciveira.bsky.social · 11/09/2026
El 11 de septiembre de 1973: El golpe de Estado que derrocó a Salvador Allende y llevó a Augusto Pinochet al poder en Chile. youtu.be/6nOaPrXceFs?...
youtu.be
El golpe militar de Chile- Bully Magnets - Historia Documental
YouTube video by Bully Magnets - Historia Documental
011
Reposted by Oscar Silva
Journal of Evolutionary Biology @jevbio.bsky.social · 11/09/2026
Can selfish genetic elements get away with their selfishness? This depends on ecology of their host organisms. Under certain conditions, selfish genetic elements may spread virtually unopposed by selection: doi.org/10.1093/jeb/... @martijnschenkel.bsky.social @arvidagren.bsky.social & M. Patten
doi.org
The ecological theatre of selfish elements
Abstract. Some selfish genetic elements enhance their transmission to the next generation by interfering with and eliminating competing variants within the
0188
Reposted by Oscar Silva
Yann Dussert @yanndussert.bsky.social · 11/09/2026
The LBGB team at @genoscopeumr.bsky.social, led by @jm-aury.bsky.social, recently released Hobrac, a tool to investigate synteny between genomes! Can be used for assembly validation or comparative genomics. doi.org/10.64898/202... github.com/Genoscope-LB... See below for what Hobrac can do:
Figure showing some outputs of the Hobrac tool (e.g. ribbon plots & oxford plots), here illutrating synteny between bivalve genomes.
12218
Reposted by Oscar Silva
Evgenii Protasov @evgenii-protasov.bsky.social · 11/09/2026
Alternative genetic codes in bacteria and archaea identified with a fast k-mer–based algorithm #microbiology #genetics #archaea #bacteria #MicroSky @pnas.org www.pnas.org/doi/10.1073/...
175
Oscar Silva @oscar-silva.bsky.social · 09/09/2026
Should we take Richard Goldschmidt’s ideas about evolution more seriously from now on?
010