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in silico Plants

@insilicoplants.bsky.social
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in silico Plants is an open-access journal dealing with all aspects of computational plant science. academic.oup.com/insilicoplants

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in silico Plants @insilicoplants.bsky.social · 1h
📢 Job Alert: Molecular Biologist at the Plant Biology Institute, Oxford buff.ly/BSl9MhC #PlantSciJobs
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Scientist, Molecular Biology - Plant Biology Institute - Ellison Institute of Technology
Join us at EIT:At the Ellison Institute of Technology (EIT), we’re on a mission to translate scientific discovery into real world impact. We bring together visionary scientists, technologists,…
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in silico Plants @insilicoplants.bsky.social · 3h
📢 EOIs are open until 2 October to attend a workshop on Agricultural Horizons: What Will It Take to Feed the World by 2050? More info: buff.ly/ivPVT9Z #PlantScience ...
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in silico Plants @insilicoplants.bsky.social · 02/10/2026
💧 Phloem anatomy restricts root system architecture development: theoretical clues from in silico experiments buff.ly/kcoaRfU #PlantScience #CPlantBox #RootScience
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Phloem anatomy restricts root system architecture development: theoretical clues from in silico experiments
Abstract. Plant growth and development involve the integration of numerous processes, influenced by both endogenous and exogenous factors. At any given tim
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in silico Plants @insilicoplants.bsky.social · 02/10/2026
💧 CPlantBox: a fully coupled #modelling platform for the water and carbon fluxes in the soil-plant-atmosphere continuum buff.ly/0XmEEOc #PlantScience
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CPlantBox: a fully coupled modelling platform for the water and carbon fluxes in the soil–plant–atmosphere continuum
Abstract. A plant’s development is strongly linked to the water and carbon flows in the soil–plant–atmosphere continuum. Expected climate shifts will alter
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in silico Plants @insilicoplants.bsky.social · 01/10/2026
🌾 #Wheat #crop traits conferring high yield potential may also improve yield stability under climate change buff.ly/LzCZgeQ #PlantScience #ClimateChange
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Wheat crop traits conferring high yield potential may also improve yield stability under climate change
Abstract. Increasing genetic wheat yield potential is considered by many as critical to increasing global wheat yields and production, baring major changes
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in silico Plants @insilicoplants.bsky.social · 01/10/2026
💻 🍃 Bridging photosynthesis and #crop yield formation with a mechanistic #model of whole-plant carbon-nitrogen interaction buff.ly/7Umb15f #PlantScience
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Bridging photosynthesis and crop yield formation with a mechanistic model of whole-plant carbon–nitrogen interaction
Abstract. Crop yield is determined by potential harvest organ size, source organ photosynthesis and carbohydrate partitioning. Filling the harvest organ ef
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Agricultural Model Intercomparison and Improvement Project @agmip.bsky.social · 28/09/2026
AgMIP11 abstract submission is now open! Submit your research for consideration for presentation at AgMIP’s 11th Global Workshop. 📝 Abstract submission deadline: October 23, 2026 at 11:59 PM ET 🔗 Submit your abstract: agmip.org/agmip11-abst... 🌍 Learn more and register: agmip.org/agmip11/
agmip.org
AgMIP11 Homepage - agmiporg
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in silico Plants @insilicoplants.bsky.social · 30/09/2026
ISHS GREENSYS 2027: An international symposium on Smart and Sustainable Greenhouse Systems symposium Wageningen | 6–10 June 2027 HURRY! The abstract submission deadline is 1 October 2026! buff.ly/hpvDbcX
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GreenSys 2027: International symposium on Smart and Sustainable Greenhouse Systems - Home
We invite you for the International symposium on Smart and Sustainable Greenhouse Systems. Are you from a academics, industry, a start-up or large-scale company or any other professional? Are you…
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in silico Plants @insilicoplants.bsky.social · 30/09/2026
NEW! Optimising the specific adaptation of #sorghum in variable water-limited environments in Australia buff.ly/FCcJu3y #PlantScience #drought @coeplantsuccess.bsky.social
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https://doi.org/10.1093/insilicoplants/diag02
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in silico Plants @insilicoplants.bsky.social · 29/09/2026
🧬🌽 Ensembles of Graph Attention Networks Supervised by Genotype-to-Phenotype Structures Improved Genomic Prediction Performance by Shunichiro Tomura, Owen Powell, Melanie Wilkinson, Mark Cooper @qaafi.bsky.social buff.ly/5uimYqT buff.ly/zmgesLv #PlantScience #GenomicPrediction #Ensemble
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Ensembles of graph attention networks supervised by genotype-to-phenotype structures improved genomic prediction performance
Abstract. Accurate selection of favourable crop genotypes has motivated the exploration of diverse prediction algorithms for crop breeding applications. On
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in silico Plants @insilicoplants.bsky.social · 29/09/2026
Job Alert Postdoctoral Researcher in Autonomous Controlled Environmental Agriculture at Maastricht University buff.ly/vEdlpgX #PlantSciJobs
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Postdoctoral Researcher in Autonomous Controlled Environmental Agriculture
Postdoctoral Researcher in Autonomous Controlled Environmental Agriculture
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in silico Plants @insilicoplants.bsky.social · 28/09/2026
🌾💧 Increasing transpiration sensitivity to rising vapor pressure deficit raises U.S. spring #wheat yields under current and future climates by Xiaoxing Zhen and Walid Sadok buff.ly/TmRv1cV #PlantScience #drought #APSIM
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Increasing transpiration sensitivity to rising vapour pressure deficit raises US spring wheat yields under current and future climates: a two-model simulation study
Abstract. Limited wheat transpiration under rising vapour pressure deficit (VPD), i.e. VPD-sensitivity, has been shown to improve yields under terminal dro
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in silico Plants @insilicoplants.bsky.social · 28/09/2026
🧬🍃 Can Deep Learning Predict Inducibility of Stress-Responsive Gene Expression from DNA Sequence in Arabidopsis thaliana?  by Jordi Alonso Esteve, Niels Aerts, Saskia C M van Wees, Dick de Ridder, and Aalt D J van Dijk buff.ly/0u8dPMI #PlantScience #genetics
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Can deep learning predict inducibility of stress-responsive gene expression from DNA sequence in Arabidopsis thaliana?
Abstract. Noncoding regions mediate transcriptional adaptation to stress in plants, yet the genomic determinants driving gene expression responses remain p
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in silico Plants @insilicoplants.bsky.social · 25/09/2026
Job alert Tenure Track: Assistant Professor – Artificial Intelligence in Soil and Crop Sciences at Texas A&M buff.ly/YW1cO41 #PlantSciJobs #SoilSciJobs
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Apply - Interfolio
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in silico Plants @insilicoplants.bsky.social · 25/09/2026
🌽 Optimisation of Weighted Ensembles of #Genomic Prediction Models in #Maize by Shunichiro Tomura, Owen Powell, Melanie J Wilkinson, James Lefvre, and Mark Cooper @coeplantsuccess.bsky.social @qaafi.bsky.social buff.ly/wdm6aAa #PlantScience
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Optimization of weighted ensembles of genomic prediction models in maize
Abstract. Ensembles of multiple genomic prediction models have demonstrated improved prediction performance over the individual models contributing to the
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in silico Plants @insilicoplants.bsky.social · 24/09/2026
NEW! Recommendation of Suitable Planting Locations for Hybrid #Maize Varieties Based on Graph Collaborative Filtering by Yanyun Han, Zhongqiang Liu, Aiwen Wang, Yong Zhang, Shouhui Pan, Xiangyu Zhao, Qiusi Zhang, Qi Zhang, Xinglin Piao, Kaiyi Wang buff.ly/8ExJabQ #PlantScience
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in silico Plants @insilicoplants.bsky.social · 24/09/2026
Job alert: Postdoctoral Research Fellow in Remote Sensing and Numerical Weather Modeling at the University of Louisville buff.ly/mEKZSvH #PlantSciJobs
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https://www.linkedin.com/jobs/view/4464203067/
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in silico Plants @insilicoplants.bsky.social · 24/09/2026
🌿 Do specific root zones shape plant net N uptake? Modeling insights from Root-CyNAPS buff.ly/NKoNVz9 #PlantScience #RootScience #FSPM
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in silico Plants @insilicoplants.bsky.social · 23/09/2026
💧☀️🌡️🌽 Technical Advance: Unlocking crop protection models for decision support: Web infrastructure and integration buff.ly/JRf4azS #PlantScience
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Unlocking crop protection models for decision support: web infrastructure and integration
Abstract. Decision support systems (DSS) in crop protection provide valuable support for pest risk prognosis and recommendations for pest control, enabling
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in silico Plants @insilicoplants.bsky.social · 23/09/2026
Job alert: Digital Plant Phenotyping & Machine Learning Co-Op with Bayer buff.ly/wsdISiD #PlantSciJobs
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Digital Plant Phenotyping & Machine Learning Co-Op | Chesterfield,Missouri,United States | Bayer
Join Bayer as we strive for a world where Health for all, Hunger for none is a real possibility. Explore our open roles and contribute to a better future.
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in silico Plants @insilicoplants.bsky.social · 23/09/2026
📢 Could you be the next Chief Editor of in silico Plants? We are seeking applications from established plant scientists with proven editorial experience and a passion for computational plant science. 📅 The application deadline is tomorrow (Sept 24) ℹ️ More information: buff.ly/DKuXDng #PlantSciJobs
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Elinor Lichtenberg @dremlichtenberg.bsky.social · 20/08/2026
Another PhD opportunity in my lab! Interdisciplinary NSF-funded project developing a new framework and tools for understanding and valuing ecosystem services, with a focus on crop #pollination. Details: cos.unt.edu/biology/lich... 🌐🌎👩🏿‍🔬
cos.unt.edu
Opportunities
Interested in joining the Lichtenberg Lab? See below. The Lichtenberg lab is committed to providing an inclusive and supportive environment to trainees from diverse backgrounds.
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International Journal of Plant Sciences @ijpsjournal.bsky.social · 12/08/2026
AOP @ijpsjournal.bsky.social Comparative Evolution of Photosynthetic Light Response Curves: Approaches and Pitfalls in Phylogenetic Modeling of a Function-Valued Trait Rebekah Evelyn Davis, @plantevoecophys.bsky.social, Eric Goolsby www.journals.uchicago.edu/doi/10.1086/... #PlantScience
journals.uchicago.edu
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Trends in Plant Science @cp-trendsplantsci.bsky.social · 08/07/2026
Digital twins for plant and crop improvement #plantscience
dlvr.it
Digital twins for plant and crop improvement
Plant digital twins (DTs) are dynamic, data-aware virtual representations that integrate plant structure, physiology, and environmental inputs to simulate plant function, growth, and performance. By combining process-based models, phenomics data, and environmental states in a continuous feedback loop linking physical and virtual plants, DTs offer a novel approach for investigating complex biological systems. In this opinion article, we outline the conceptual foundations of DTs and how they offer new opportunities to bridge the genotype-to-phenotype gap and aid in crop improvement. Despite their promise, major challenges remain in DT development, scalability, and accessibility. Addressing these challenges will be critical for enabling the broad adoption of DTs as transformative tools for accelerating plant science research and crop improvement.
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in silico Plants @insilicoplants.bsky.social · 21/09/2026
💧🌾 Disentangling sources of errors in simulated wheat evapotranspiration buff.ly/y4yVlbU #PlantScience #drought
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Abstract. Accurate simulation of crop evapotranspiration (ET) is critical for water management and for understanding the impacts of climate variability and
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in silico Plants @insilicoplants.bsky.social · 19/09/2026
All of the entries are outstanding! Here's my favorite. See them all: www.plantsuccess.org/21-ways-to-c...
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in silico Plants @insilicoplants.bsky.social · 16/09/2026
📢 Open call for contributions to our Special Issue “The Evolution and Future of #APSIM: 30 Years On” 📅 Deadline: 28 February 2027 👩‍🔬 Guest Editors: Alex Wu, Enli Wang, Scott Chapman @keithpembleton.bsky.social Matthew Knowling, and Karine Chenu 📝 Find out more: buff.ly/PnEFKZe
academic.oup.com
Calls for Papers: Virtual Special Issues
Increase the visibility of your research by submitting to one of our calls for papers listed below. Submissions to open calls are made via our regular submissi
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in silico Plants @insilicoplants.bsky.social · 16/09/2026
📢 Could you be the next Chief Editor of in silico Plants? We are seeking applications from established plant scientists with proven editorial experience and a passion for computational plant science. 📅 Hurry! The application deadline is next week ℹ️ More information: buff.ly/DKuXDng #PlantSciJobs
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in silico Plants @insilicoplants.bsky.social · 15/09/2026
Is your work accessible to everyone? 🌿💻 Submit a Methods for Plant Modelling article to assist non-modelling researchers and students use and build upon your ✅ Algorithms & software ✅ Models ✅ Frameworks, platforms, or languages Click here for more information: buff.ly/4ChzxST
Bridge the gap in plant science. Make your work accessible with our newest article type: Methods for Plant Modelling. Submit your work today! - in silico Plants
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in silico Plants @insilicoplants.bsky.social · 15/09/2026
🧬 Comparative analysis of gene regulatory networks identifies conserved regulators in seed plants by @donat.bsky.social and @andreabraeutigam.bsky.social buff.ly/O5G8I3I #PlantScience #genetics #model
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Abstract. Gene regulatory networks (GRNs) based on transcription factors (TFs) control development and environmental responses. In this study, GRNs were in
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Oxford Academic @academic.oup.com · 13/09/2026
🌱 We are currently inviting applications for the role of Editor-in-Chief for @insilicoplants.bsky.social ! Don't miss the opportunity to help shape the future of the journal during an exciting time of growth within the field. oxford.ly/4xF5Omk
Green card with text "Call for Editor-in-Chief"
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Plantae.org @plantaeofficial.bsky.social · 04/09/2026
#JustIn on Plantae: The Garden You Choose: A Post-PhD Career Guide for Plant Scientists. In this new piece, ASPB Plantae Fellows Jahed Ahmed and Gourav Arora offer a reflective, practical career guide for plant scientists nearing the end of their PhD. buff.ly/FjS3yMf #PlantScience
plantae.org
The Garden You Choose: A Post-PhD Career Guide for Plant Scientists | Plantae
The journey so far You finish high school, then a bachelor’s degree, then a master’s, and eventually a PhD. Each step can feel like the natural continuation of the one before it. Along the way…
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in silico Plants @insilicoplants.bsky.social · 14/09/2026
💻 🍃 A scalable pipeline to create synthetic datasets from functional-structural plant #models for deep learning buff.ly/JkFMyaa #PlantScience #FSPM
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Validate User
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in silico Plants @insilicoplants.bsky.social · 14/09/2026
💻 🍃 A mathematical #model of photoinhibition: exploring the impact of quenching processes by Tim Nies, Shizue Matsubara, Oliver Ebenhoeh doi.org/10.1093/insi... #PlantScience
doi.org
A mathematical model of photoinhibition: exploring the impact of quenching processes
Abstract. Plants are constantly exposed to changing environments, sometimes leading to extreme conditions and stress. For example, sudden exposure to high
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in silico Plants @insilicoplants.bsky.social · 14/09/2026
💻 🍃 Are we focusing on the right parameters? Insights from Global Sensitivity Analysis of a Functional-Structural Plant #model by Rik J. L. Rutjens, Jochem B. Rutjens, Leah R. Band, Matthew D. Jones, Markus R. Owen doi.org/10.1093/insi... #PlantScience #FSPM
doi.org
Are we focusing on the right parameters? Insights from Global Sensitivity Analysis of a Functional-Structural Plant Model
Abstract. Performing global sensitivity analysis on functional-structural plant models (FSP models) can greatly benefit both model development and analysis
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in silico Plants @insilicoplants.bsky.social · 14/09/2026
♪🌾 Playing a #crop simulation #model using symbols and sounds: the 'mandala' by Simone Bregaglio, Giulia Carriero, Roberta Calone, Maddalena Romano, Sofia Bajocco doi.org/10.1093/insi... #PlantScience
doi.org
Playing a crop simulation model using symbols and sounds: the ‘mandala’
Abstract. Abstract. Simulation models are primary tools for synthesizing plant physiological knowledge, supporting farmers’ decisions and predicting crop y
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in silico Plants @insilicoplants.bsky.social · 14/09/2026
📢 Open call for contributions to our Special Issue "Simulating plant-plant interactions and community dynamics" organized by Andrew Friend, Univ Cambridge (@camunigeography.bsky.social) 📝 Find out more: buff.ly/quEsNrC #PlantScience
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Calls for Papers: Virtual Special Issues
Increase the visibility of your research by submitting to one of our calls for papers listed below. Submissions to open calls are made via our regular submissi
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in silico Plants @insilicoplants.bsky.social · 11/09/2026
💻 🍃 Connecting detailed photosynthetic kinetics to #crop growth and yield: a coupled #modelling framework by Yufeng He, Yu Wang, Douglas Friedel, Meagan Lang, Megan L. Matthews doi.org/10.1093/insi... #PlantScience
doi.org
Connecting detailed photosynthetic kinetics to crop growth and yield: a coupled modelling framework
Abstract. Photosynthesis and crop growth are inseparable processes that govern plant carbon assimilation and allocation. An accurate model description of t
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in silico Plants @insilicoplants.bsky.social · 11/09/2026
🌾 Identifying and quantifying the contribution of #maize plant traits to nitrogen uptake and use through plant #modelling by Jie Lu, Tjeerd Jan Stomph, Guohua Mi, Lixing Yuan, Jochem Evers doi.org/10.1093/insi... #PlantScience
doi.org
Identifying and quantifying the contribution of maize plant traits to nitrogen uptake and use through plant modelling
Abstract. Breeding for high nitrogen-use efficient crops can contribute to maintaining or even increasing yield with less nitrogen. Nitrogen use is co-dete
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Association of Applied Biologists @aabiologists.bsky.social · 10/09/2026
🚨 Only 2 days left to submit an abstract!! 🚨 Present your work at Sustainable Crop Nutrition this November👇 #plantscience #soilhealth
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in silico Plants @insilicoplants.bsky.social · 10/09/2026
🌿Are you teaching or learning plant modeling? Discover our latest article type: Methods for Plant Modeling articles describe software, tools, models, and other resources in an accessible way, making them suitable for educational use. 📰 See the collection at buff.ly/P1GV8q6
Learn how to use plant models!
Methods for Plant Modelling
Every article contains an introduction to the model, essential equations, and instructions
EXPLORE THE COLLECTION! - in silico plants
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in silico Plants @insilicoplants.bsky.social · 10/09/2026
🌳 #modelBark: a toy #model to study bark formation in woody species by Alvaro Gutierrez-Climent, Juan Carlos Nuno, Unai Lopez de Heredia, Alvaro Soto buff.ly/PU2Y5Gk #PlantScience
doi.org
ModelBark: a toy model to study bark formation in woody species
Abstract. The study of growth of woody species is a challenging issue, primarily due to the complexity of the involved processes, which span broad spatial
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in silico Plants @insilicoplants.bsky.social · 09/09/2026
🌿 💻 Elements of a functional-structural plant model by Alejandro Morales, Jorad de Vries, Katarína Smoleňová, Franca J Bongers and Jochem B Evers buff.ly/F6740KI #PlantScience #FSPM
doi.org
Elements of a functional–structural plant model
Abstract. Functional–structural plant (FSP) models explicitly couple aspects of plant function with three-dimensional plant structure, enabling the analysi
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in silico Plants @insilicoplants.bsky.social · 09/09/2026
📢 The Call for Papers for in silico Plant’s Special Issue “Advances in Plant and Crop Modelling in the Era of Big Data and AI” is open until 30 September 2026 👩‍🔬 Guest Editors: Junqi Zhu, Karine Chenu, Bangyou Zheng, and Xinguang Zhu 📝 Find out more: buff.ly/NuXOA30 #PlantScience
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Calls for Papers: Virtual Special Issues
Increase the visibility of your research by submitting to one of our calls for papers listed below. Submissions to open calls are made via our regular submissi
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in silico Plants @insilicoplants.bsky.social · 09/09/2026
📢 Could you be the next Chief Editor of in silico Plants? We’re inviting applications from established plant scientists with proven editorial experience and a passion for computational plant science. 📅 Apply by Sept 24, 2026 ℹ️ More information: buff.ly/DKuXDng #PlantSciJobs
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Paula Elomaa @paulaelomaa.bsky.social · 06/09/2026
Open university lecturer position at @helsinki.fi Dept. of Agricultural Sciences! jobs.helsinki.fi/job/Helsinki...
jobs.helsinki.fi
University Lecturer in Crop science
University Lecturer in Crop science
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Nick Smith @nickgregsmith.bsky.social · 04/09/2026
New commentary by me and PhD student Monika Kelley: "A new tool for fitting C4 gas exchange response curves" in @jxbotany.bsky.social . The new tool should make it easier to extract interesting parameters from C4 plants that make them easier to understand and model academic.oup.com/jxb/article/...
academic.oup.com
A new tool for fitting C4 gas exchange response curves
This article comments on:Woodford R, Ermakova M, Furbank RT, von Caemmerer S. 2026. Fitting photosynthetic carbon dioxide and irradiance response curves fo
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Daniel Croll @danielcroll.bsky.social · 04/09/2026
Our lab is looking for PhD students to join us in 2027 🎓🎉 The projects can be structured around our research directions: - Transposable element dynamics - Fungal pangenomics - ML/language model genomics applications - Pathogen adaptation More here pathogen-genomics.org ("Jobs") and please share! 🙏
pathogen-genomics.org
Evolutionary genomics of pathogens
Croll lab at University of Neuchatel. The lab of Daniel Croll wants to understand how pathogens evolve to cause disease. For this, we mainly focus on major crop pathogens to unravel mechanisms of rapi...
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Laurent Laplaze @laplaze-laurent.bsky.social · 08/09/2026
OpenAlea.HydroRoot: A modelling framework to dissect, predict and phenotype branched #root hydraulic architecture academic.oup.com/insilicoplan...
academic.oup.com
OpenAlea.HydroRoot: A modelling framework to dissect, predict and phenotype branched root hydraulic architecture
Abstract. Drought is a significant factor in agricultural losses, making it imperative to understand how root system architecture and function (RSA) adapts
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Association for Women in Science @awisnational.bsky.social · 08/09/2026
Artificial intelligence is transforming every industry, and AWIS has the resources to help you navigate this revolution with confidence. Find the tools you need to shape your career. awis.org/ai #WomenInScience
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