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Mike Pazin

@mikepazin.bsky.social
204 followers 194 following 62 posts

All views/posts are my personal opinions; Functional genomics program officer; drums and music; running and bicycling; photography; learning how things work; creative thinking

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Reposted by Mike Pazin
Jeremy Berg @jeremymberg.bsky.social · 01/10/2026
From a discussion of updating a department website...
A photo with baby Yoda and adult Yoda with the caption "Could it be time for a new photo?"
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Guitar World [Unofficial] @guitarworld.com.web.brid.gy · 26/09/2026
guitarworld.com
Tony Levin’s lessons from Steve Vai, Robert Fripp and Peter Gabriel
The BEAT man charts his career from upright to his first Fender, sessions with Lou Reed and Alice Cooper, and the instrument you might be surprised to know he plays…
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Lord Sedge of Sedgley @lordsedge.bsky.social · 25/09/2026
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Sonya Neal @neal-lab.bsky.social · 02/09/2026
Come be my colleague!! 🎉 We’re hiring an Assistant Professor in Developmental Biology at UCSD! If you’re doing exciting work in development or regeneration, come join us!! Please spread the word and apply! apol-recruit.ucsd.edu/JPF04591
apol-recruit.ucsd.edu
Assistant Professor of Developmental Biology
University of California, San Diego is hiring. Apply now!
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Samantha Butler @samanthabutler.bsky.social · 02/09/2026
Please spread the news - the Department of Neurobiology at UCLA is hiring. This is an open rank search for all and any amazing neuroscientists! Please apply here by Nov 15th, first review end of October : recruit.apo.ucla.edu/JPF11296
recruit.apo.ucla.edu
Open-rank tenure-track faculty position
University of California, Los Angeles is hiring. Apply now!
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Graham Erwin @grahamerwin.bsky.social · 18/08/2026
The Baylor College of Medicine Conference on Structural Variants and DNA Repeats is back, and this year it has a new home! Join us in person in Houston November 19th–20th. Or join online. Virtual registration is FREE! ErwinLab.org/svar-conference
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Guitar World [Unofficial] @guitarworld.com.web.brid.gy · 05/08/2026
guitarworld.com
Steve Vai and Adrian Belew announce new BEAT tour, with lineup change
A new member has been drafted in as the King Crimson offshoot announce more US and Canadian dates
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Shawn Burgess @burgesslab.bsky.social · 30/07/2026
Yet another #zebrafish genome update: We just updated our ZebrafishGenomics public datahub for the UCSC browser (available all the way at the bottom here: genome.ucsc.edu/cgi-bin/hgHu...). We added several useful tracks including:
genome.ucsc.edu
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Nucleic Acids Research @narjournal.bsky.social · 31/07/2026
📣NAR is recruiting a new Executive Editor!📣Seeking an established researcher with expertise in RNA biology and translation mechanisms to help shape the journal's scientific direction, oversee peer review, and support its growth. Apply by 30 Sept 2026: academic.oup.com/nar/pages/ex...
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Itai Yanai @itaiyanai.bsky.social · 15/07/2026
‘Inhabiting the data’ is how CalTech Professor Ellen Rothenberg describes her process for coming up with a new idea, in the very first episode of the Night Science Podcast. (@nightsciencepod.bsky.social)
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Atlas of Variant Effects Alliance @varianteffect.bsky.social · 01/07/2026
Missed Abbye McEwan's excellent introduction to MAVE technology? It's now available on YouTube: www.youtube.com/watch?v=FeUp... Learn more about how to use MAVE data to inform clinical variant classification, and discover how these datasets may help resolve variants of uncertain significance.
youtube.com
VSN presents Beyond the VUS Using MAVE Data to Inform Clinical Variant Classification
YouTube video by Variant Scientists Network
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Mike Pazin @mikepazin.bsky.social · 07/07/2026
link.springer.com/article/10.1...
link.springer.com
Pan-cell type continuous chromatin state annotation of all epigenomes from the International Human Epigenome Consortium - Genome Biology
Background The International Human Epigenome Consortium has generated thousands of datasets profiling transcription factor binding, histone modification, and DNA accessibility. Existing segmentation a...
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Mike Pazin @mikepazin.bsky.social · 02/07/2026
www.nobelprize.org/prizes/econo...
nobelprize.org
Sveriges Riksbank Prize in Economic Sciences in Memory of Alfred Nobel 2025
The Sveriges Riksbank Prize in Economic Sciences in Memory of Alfred Nobel 2025 was awarded "for having explained innovation-driven economic growth" with one half to Joel Mokyr "for having identified ...
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Reposted by Mike Pazin
Randall Munroe @xkcd.com · 02/07/2026
Asteroid Threat xkcd.com/3265/
Comic. [Two images of Earth, one centered on Africa, with a dotted line behind, and the other in the foreground with a target marked in the Indian Ocean.] [caption] Dire news: An asteroid is on course to hit the Earth exactly *opposite* the Yucatán Peninsula, bringing *back* the dinosaurs.
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Guitar World [Unofficial] @guitarworld.com.web.brid.gy · 28/06/2026
guitarworld.com
“I was driving home, and I thought of this chord sequence. I was about 20 minutes away from the studio. I turned around and went back”: Robert Smith on the flash of inspiration that shaped the Cure's biggest hit
Proving beyond doubt that the band's range extended far beyond dense, brooding epics, it remains the Cure song to reference for those who know only of the band's name and maybe their frontman's inimitable hairdo
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Jeremy Berg @jeremymberg.bsky.social · 25/06/2026
Foundational! "The scientist doing basic research may not be at all interested in the practical applications of his work, yet the further progress of industrial development would eventually stagnate if basic scientific research were long neglected." From Science: The Endless Frontier, Bush, 1945
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Oded Rechavi @odedrechavi.bsky.social · 19/06/2026
Nothing is more annoying than seeing a badge telling you there's one unread message or task in an app, then going through every corner of the app and not finding it.
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Atlas of Variant Effects Alliance @varianteffect.bsky.social · 17/06/2026
Don't miss Abbye McEwen's deep dive into interpretation of variants of unknown significance (VUS) - happening today (12.00 pm ET / 9.00 am PT / 5.00 pm BST). Join here: bit.ly/3Seq0LL #DeepMutationalScanning #VariantScientistNetwork #AtlasOfVariantEffects
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Atlas of Variant Effects Alliance @varianteffect.bsky.social · 15/06/2026
This Wednesday, are you ready to go beyond the VUS and learn more about using multiplexed assays of variant effects (MAVEs) to inform clinical variant classification? It's free to sign up: bit.ly/3Seq0LL #DeepMutationalScanning #VariantScientistNetwork #VUS #MAVE #AtlasOfVariantEffects
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Michael Love @mikelove.bsky.social · 30/04/2026
Bioconductor 3.23 is released! Thanks to the core team for all the hard work that goes into a release, and to the package reviewers. The lab has a bunch of updates in here that I'll post in 🧵 over the next few days:
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Itai Yanai @itaiyanai.bsky.social · 12/04/2026
There's a strange myth about science: that theory comes first, and that data cannot show anything new. But anyone who's ever done science knows the truth that there's a long conversation between data & hypotheses. Back & forth.. until the discovery. And if you think about it, it has to be this way!
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National Academy of Sciences @nasonline.org · 06/04/2026
Congratulations to NAS President-Elect @neilshubin.bsky.social on winning @sse-evolution.bsky.social's Stephen Jay Gould Prize! The award honors individuals who have advanced public understanding of evolutionary science in the spirit of #NASmember Stephen Gould. evolutionsociety.org/index.php?mo...
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Itai Yanai @itaiyanai.bsky.social · 03/04/2026
Professors: come get trained by us in how to teach the Night Science Workshop on the creative scientific process to your students who are thirsty for this material! Our Train-the-Trainer 1day program in NYC April 24 is in partnership with the NY Academy of Sciences! night-science.org/train-the-tr...
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Job Dekker @jobdekker.bsky.social · 17/12/2025
A major output of the 4D Nucleome project appeared today. This is the joint effort of many scientists working together and (publicly) sharing data and results for several years. We hope this is of interest to many genome biologists! www.nature.com/articles/s41...
nature.com
An integrated view of the structure and function of the human 4D nucleome - Nature
The 4D Nucleome Project demonstrates the use of genomic assays and computational methods to measure genome folding and then predict genomic structure from DNA sequence, facilitatin...
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Genetics Society of America @genetics-gsa.bsky.social · 21/10/2025
🎉 New in #GENETICS: Functional Genomics & Systems Biology section! Highlighting cutting-edge studies on molecular networks, systems-level insights, and innovative methods. Read more: buff.ly/wWVZdrS%F0%9...
buff.ly
Announcing the new “Functional Genomics and Systems Biology” section in GENETICS
The GSA Journals are introducing Functional Genomics and Systems Biology, a new section led by Brenda Andrews and Marian Walhout that highlights systems-level studies of genetic networks and pathways.
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Mike Pazin @mikepazin.bsky.social · 20/05/2025
Possible new treatment for Lyme disease: pubmed.ncbi.nlm.nih.gov/40267215/
pubmed.ncbi.nlm.nih.gov
A high-resolution screen identifies a preexisting beta-lactam that specifically treats Lyme disease in mice - PubMed
Lyme disease, caused by <i>Borrelia burgdorferi</i> in the United States, is an escalating human health problem that can cause severe disease if not properly treated. Doxycycline is the primary treatm...
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Mike Pazin @mikepazin.bsky.social · 20/05/2025
Possible mechanism for chronic illness following Lyme disease pubmed.ncbi.nlm.nih.gov/40267217/
pubmed.ncbi.nlm.nih.gov
The peptidoglycan of Borrelia burgdorferi can persist in discrete tissues and cause systemic responses consistent with chronic illness - PubMed
Persistent symptoms after an acute infection is an emerging public health concern, but the pathobiology of such conditions is not well understood. One possible scenario involves the persistence of lin...
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Reposted by Mike Pazin
Neil deGrasse Tyson @neildegrassetyson.com · 17/05/2025
The 80-year recipe stoking America’s Prosperity: 1) Free-market capital investments in brilliant ideas… 2) enabled by Engineering Innovations… 3) based on Science Research in Universities… 4) funded by Grants from the US Government. It’s time more people understood this.
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Mike Pazin @mikepazin.bsky.social · 07/05/2025
pubmed.ncbi.nlm.nih.gov/40229440/ How the United States became a science superpower- and how quickly it could crumble
pubmed.ncbi.nlm.nih.gov
How the United States became a science superpower - and how quickly it could crumble - PubMed
How the United States became a science superpower - and how quickly it could crumble
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Mike Pazin @mikepazin.bsky.social · 05/05/2025
I ran the Pittsburgh marathon Sunday. I was thrilled with how the race and training went. Personal record for me for marathon, and better than my target for today. Thanks to my partner Andrea and my sons and Tiny Dog for their support from training to race day (coach Jack!).
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Mike Pazin @mikepazin.bsky.social · 29/04/2025
pubmed.ncbi.nlm.nih.gov/40147441/
pubmed.ncbi.nlm.nih.gov
Widespread variation in molecular interactions and regulatory properties among transcription factor isoforms - PubMed
Most human transcription factor (TF) genes encode multiple protein isoforms differing in DNA-binding domains, effector domains, or other protein regions. The global extent to which this results in fun...
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Mike Pazin @mikepazin.bsky.social · 29/04/2025
I ran the Nashville Rock ‘n’ Roll half marathon Saturday, benefitting cancer research at St. Jude Children’s Research Hospital. I loved running “with” my son. Personal record for me. Last tune up before next week’s marathon. I love that money is being raised to improve people’s health.
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Mike Pazin @mikepazin.bsky.social · 20/04/2025
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Mike Pazin @mikepazin.bsky.social · 01/04/2025
Economists consider impact of changes to funding science and universities www.nytimes.com/2025/03/31/b...
nytimes.com
Trump Science Funding Cuts May Hurt Economy, Experts Say
Since World War II, U.S. research funding has led to discoveries that fueled economic gains. Now cutbacks are seen as putting that legacy in jeopardy.
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Mike Pazin @mikepazin.bsky.social · 28/03/2025
www.theatlantic.com/ideas/archiv...
theatlantic.com
You Can Do Leisure Better, Seriously
If you think of personal time only as “not work,” you could be missing out on truly enriching experiences.
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Carl de Boer @carldeboer.bsky.social · 20/03/2025
Last call for a postdoc position in single cell analysis/perturb-seq with @nikashakiba.bsky.social at UBC in beautiful Vancouver Canada! ubc.wd10.myworkdayjobs.com/en-US/ubcfac...
Sunset on UBC campus
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Our World in Data @ourworldindata.org · 20/03/2025
Women live longer than men, but how much longer varies widely around the world
A world map illustrates the differences in life expectancy between females and males at birth in 2023. Areas shaded in darker purple indicate a greater male life expectancy compared to females, while lighter shades represent regions with higher female life expectancy. Notable data points include Ukraine with a difference of 13.3 years, Russia at 11.8 years, Togo at 0.4 years, and Nigeria at 0.6 years. The data source is the Human Mortality Database (2024) and UN World Population Prospects (2024). The map is attributed with a CC BY license and published by Our World in Data.
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Arjun Raj @arjunraj.bsky.social · 18/03/2025
Sitting in a journal club-style class right now and after the main presenters present, there are "roles" from others in the group, like the "archeologist" who looks into the citation trail, the "private investigator" who tries to dig into the history, and the "industry practitioner", etc. Cool idea!
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Benoit Bruneau @benoitbruneau.bsky.social · 17/03/2025
oh this is so good
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Mike Pazin @mikepazin.bsky.social · 16/03/2025
Analysis of NIH found that for every $1.00 of funded research there was $2.56 in economic activity. See the jobs created and economic activity in your state. Read recent research highlights. The “business” of the NIH is improving our health. www.unitedformedicalresearch.org/wp-content/u...
unitedformedicalresearch.org
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Science Friday @scifri.bsky.social · 16/03/2025
90% of people diagnosed with pancreatic cancer die from the disease. That's why the medical community is excited about the results of a small trial in which nearly half of the pancreatic cancer patients who received an mRNA vaccine for the disease remained relapse-free three years later.
sciencefriday.com
A Vaccine For Pancreatic Cancer Continues To Show Promise
In a small trial, nearly half of pancreatic cancer patients who received an mRNA vaccine for the disease had no relapse three years later.
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Mike Pazin @mikepazin.bsky.social · 15/03/2025
I ran the DC Rock ‘n’ Roll half marathon today, benefitting cancer research at St. Jude Children’s Research Hospital. I was thrilled with how the race and training went. Personal record for me, much better than my previous best half marathon, and better than my target for today.
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Mike Pazin @mikepazin.bsky.social · 12/03/2025
Nice work assessing the effects of genetic variants in primary human T cells leading to enhanced T cell immunotherapy youtu.be/jO6ybztQnzs?...
youtu.be
"Massively scalable assessment of variant effects in primary human T cells" - Zachary Walsh
YouTube video by Variant Effects
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Eric Topol @erictopol.bsky.social · 10/03/2025
Who funds biomedical research? @nature.com www.nature.com/articles/d41...
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danapeer.bsky.social @danapeer.bsky.social · 11/03/2025
Congratulations to the new fellows.
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Mike Pazin @mikepazin.bsky.social · 07/03/2025
I think this short video does a great job explaining why we should all be happy that a small portion of our tax dollars funds basic research youtu.be/GmhD-RWNL6c?...
youtu.be
*Winner* Funding Basic Science to Revolutionize Medicine, 2013 FASEB Stand Up for Science
YouTube video by Federation of American Societies for Experimental Biology
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Mike Pazin @mikepazin.bsky.social · 05/03/2025
Exciting seminar on calibrating results from high-throughput functional genomics assays and predictive models for clinical interpretation. youtu.be/TY-C7Dz-Wi4?... @shawnfayer.bsky.social @dougfowler.bsky.social @leastarita.bsky.social #VESS
youtu.be
"Reassessing the Calibration of Variant Effect Predictors for Clinical Interpretation"
YouTube video by Variant Effects
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Mike Pazin @mikepazin.bsky.social · 05/03/2025
Overcoming challenges associated with broad sharing of human genomic data Thoughtful perspective on challenges of data sharing followed with recommendations pubmed.ncbi.nlm.nih.gov/39843657/
pubmed.ncbi.nlm.nih.gov
Overcoming challenges associated with broad sharing of human genomic data - PubMed
Since the Human Genome Project, the consensus position in genomics has been that data should be shared widely to achieve the greatest societal benefit. This position relies on imprecise definitions of...
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Mike Pazin @mikepazin.bsky.social · 04/03/2025
Exciting seminar on understanding receptor-ligand signaling using mutational scanning. How does a receptor decode ligands to decide whether to signal, or how strongly? youtu.be/hDlJU6HI9Os?...
youtu.be
"Mutational scanning to understand ligand efficacy and potency in GPCRs"- Matthew Howard
YouTube video by Variant Effects
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Mike Pazin @mikepazin.bsky.social · 03/03/2025
pubmed.ncbi.nlm.nih.gov/39579740/ I liked this thoughtful review
pubmed.ncbi.nlm.nih.gov
Genetic factors mediating long-range enhancer-promoter communication in mammalian development - PubMed
Enhancers are remotely located noncoding DNA sequences that regulate gene expression in response to developmental, homeostatic, and environmental cues. Canonical short-range enhancers located <50 kb f...
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