Sign in

Doug Fowler

@dougfowler.bsky.social
1.5K followers 346 following 12 posts

Genomics, technology and human genetics @University of Washington. Working to create an atlas of variant effects and resolve VUS.

PostsRepliesMedia
Doug Fowler @dougfowler.bsky.social · 16/09/2025
So excited to see you all in Melbourne next year!!!
040
Reposted by Doug Fowler
The American Journal of Human Genetics @ajhgnews.bsky.social · 15/09/2025
📣New today! 📄Landscapes of missense variant impact for human superoxide dismutase 1 🧑‍🤝‍🧑 @axakova.bsky.social @fritzroth.bsky.social & co
cell.com
Landscapes of missense variant impact for human superoxide dismutase 1
SOD1 variants cause the motor neuron disease amyotrophic lateral sclerosis. Axakova et al. functionally assay ∼86% of all possible SOD1 missense variants, producing a variant-effect map resource that ...
065
Reposted by Doug Fowler
Nature Reviews Genetics @natrevgenet.nature.com · 10/09/2025
Interested in using MAVEs for variant classification? Read our review by Abbye E. McEwen, Malvika Tejura, @shawnfayer.bsky.social, @leastarita.bsky.social & @dougfowler.bsky.social: Multiplexed assays of variant effect for clinical variant interpretation go.nature.com/3IdCfUb rdcu.be/eFmll
go.nature.com
Multiplexed assays of variant effect for clinical variant interpretation - Nature Reviews Genetics
Multiplexed assays of variant effect (MAVEs) are highly scalable experimental approaches used to generate functional data for genetic variants. In this Review, McEwen et al. discuss the advances in MA...
1144
Reposted by Doug Fowler
Andrew Glazer @amglazer.bsky.social · 03/09/2025
📝Check out our review “Creating an atlas of variant effects to resolve variants of uncertain significance and guide cardiovascular medicine”, out in @natrevcardiol.nature.com. We review the use of Multiplexed Assays of Variant Effect and variant effect predictors in cardiovascular disease.
1107
Reposted by Doug Fowler
Renee Geck @reneegeck.bsky.social · 15/08/2025
It's been a long time coming but, my postdoc work characterizing thousands of variants in G6PD is now available! Many thanks to @maitreya.bsky.social @dougfowler.bsky.social @afrubin.bsky.social and their labs! www.biorxiv.org/content/10.1...
biorxiv.org
Functional evidence for G6PD variant classification from mutational scanning
G6PD deficiency is the most common enzyme deficiency worldwide, and increases the likelihood of adverse reactions to certain drugs and foods. Identifying people at risk is challenging, since most are ...
0266
Reposted by Doug Fowler
Atlas of Variant Effects Alliance @varianteffect.bsky.social · 04/08/2025
‪🗓️ Join us tomorrow! August 5 with @nurdankuru.bsky.social (CSHL) @cshlnews.bsky.social and Ferdy van Geest (ErasmusMC) #Genetics #RareDisease #MedicalGenetics ℹ️ www.varianteffect.org/seminar-seri...
062
Reposted by Doug Fowler
Atlas of Variant Effects Alliance @varianteffect.bsky.social · 04/08/2025
Ever wondered how your genes shape your health? Dive into the Variants and Us (VUS) Podcast—where cutting-edge science meets real-world impact. 🎧 varianteffect.org/podcast/ #Genetics #RareDisease #VariantEffect #SciencePodcast #PersonalizedMedicine
023
Doug Fowler @dougfowler.bsky.social · 21/07/2025
Interested in using functional data to understand clinical variants? Been hunting for a good review of the topic? We just wrote one! rdcu.be/exaEU
nature.com
Multiplexed assays of variant effect for clinical variant interpretation
Nature Reviews Genetics - Multiplexed assays of variant effect (MAVEs) are highly scalable experimental approaches used to generate functional data for genetic variants. In this Review, McEwen et...
06932
Reposted by Doug Fowler
The American Journal of Human Genetics @ajhgnews.bsky.social · 05/06/2025
🚨In this issue🚨 A trio of papers provide key insights for integrating functional data into clinical variant interpretation #MAVE #VUS @dougfowler.bsky.social @clareturnbull.bsky.social @leastarita.bsky.social @gregfindlay.bsky.social @afrubin.bsky.social
155
Reposted by Doug Fowler
Sriram Pendyala @treependyala.bsky.social · 07/07/2025
🚨 Most variant screens measure growth or abundance. What do they miss? That variants impact a spectrum of protein and cellular phenotypes. Variant in situ sequencing (VIS-seq) finds what’s missing: image cells 🔬 first, decode later, revealing multi-scale phenotypes for thousands of variants.👇 1/9
25018
Reposted by Doug Fowler
RedPen/BlackPen @redpenblackpen.bsky.social · 19/02/2025
A reminder in these hard times. #sciencestrong
Cartoon showing a woman looking in to a microscope saying "Whoaah!!!" The caption states "The best part of Science is knowing, for a moment, something that nobody else in the world knows"
313345
Doug Fowler @dougfowler.bsky.social · 05/06/2025
Exciting recent work from colleagues @leastarita.bsky.social and Andrew Stergachis surveying clinical variant interpreters on the use of functional data! TLDR: huge demand for functional data WITH standardization, quality metrics, and better access. @ajhgnews.bsky.social shorturl.at/f8N4A
sciencedirect.com
Insights on improving accessibility and usability of functional data to unlock their potential for variant interpretation
Variant-level functional data are a core component of clinical variant classification and can aid in reinterpreting variants of uncertain significance…
071
Reposted by Doug Fowler
Brotman Baty Institute @brotmanbaty.bsky.social · 02/06/2025
TOMORROW - June 3 - at 9 AM - The Variant Effects Seminar Series will feature Ben Li (U of Michigan) & Vahid Aslanzadeh (U of Edinburgh) Details: www.varianteffect.org/seminar-seri... @varianteffect.bsky.social @uwmedicine.bsky.social
032
Doug Fowler @dougfowler.bsky.social · 18/05/2025
Build power, protect science! Thanks @sufsseattle.bsky.social @standupforscience.bsky.social
0111
Reposted by Doug Fowler
Brotman Baty Institute @brotmanbaty.bsky.social · 16/05/2025
'Science can feel like magic. When you begin to understand how and why things work, it’s incredible.' Learn more about Katie Partington, an 'intellectually adventurous' promising young scientist in the lab of BBI's Dr. Doug Fowler. brotmanbaty.org/news/promisi... @dougfowler.bsky.social @hmc.edu
063
Doug Fowler @dougfowler.bsky.social · 15/05/2025
So excited for and proud of @muffley.bsky.social!!! Since she joined our team, she's accomplished the impossible, knitting together international collaborations, empowering our team and making everything sing. We're so lucky to work with her!!!
010
Doug Fowler @dougfowler.bsky.social · 15/05/2025
Our "Atlas of Variant Effects 2030 Roadmap" is live: zenodo.org/records/1542... 1/n
zenodo.org
Atlas of Variant Effects 2030 Roadmap: resolving human variants of uncertain significance
At the Clinical Atlas of Variant Effects meeting (CLAVE meeting, July 2024, Pittsburgh USA), we developed recommendations for a draft atlas that can be realized by 2030, with a focus on empowering gen...
13627
Reposted by Doug Fowler
Kresten Lindorff-Larsen @lindorfflarsen.bsky.social · 15/05/2025
Led by @vvouts.bsky.social in @rhp-lab.bsky.social, we measured the degron potency of >200,000 30-residue tiles from >5,000 cytosolic human proteins and trained an ML model for degrons 📜 www.biorxiv.org/content/10.1... 🖥️ github.com/KULL-Centre/...
03317
Reposted by Doug Fowler
Atlas of Variant Effects Alliance @varianteffect.bsky.social · 09/05/2025
Coming up in June! You can find more information on our website www.varianteffect.org
063
Reposted by Doug Fowler
Brotman Baty Institute @brotmanbaty.bsky.social · 08/05/2025
Are you or someone you know affected by Hemophilia B? BBI's Drs. Jill Johnsen & Doug Fowler have advanced genetic understandinng of the blood disorder. Learn more. brotmanbaty.org/news/new-mut... @uwmedicine.bsky.social @dougfowler.bsky.social @hemophilia.bsky.social
brotmanbaty.org
New Mutational Scanning Method Advances Genetic Understanding of Hemophilia B | Brotman Baty Institute
BBI
011
Reposted by Doug Fowler
Jeremy Berg @jeremymberg.bsky.social · 23/04/2025
ACTION ITEM-----ACTION ITEM Implementation of Schedule F This is what a lot of us have been worried about. This allows for many civil service positions to replaced with political appointees. This could include NIH institute directors and even POs. BUT THERE IS A COMMENT PERIOD... 1/n
media.tenor.com
the word alert is in a purple circle
ALT: the word alert is in a purple circle
17362446
Reposted by Doug Fowler
Nadav Ahituv @nadavahituv.bsky.social · 22/04/2025
MPRAbase (mprabase.ucsf.edu) , a customized database for massively parallel reporter assays (MPRAs) to easily find and download MPRA data. Amazing work by Jingjing Zhao, Fotis Baltoumas, Georgios Pavlopoulos, @vagar.bsky.social, ilias Georgakopoulos-Soares & others. genome.cshlp.org/content/earl...
genome.cshlp.org
MPRAbase a Massively Parallel Reporter Assay database
An international, peer-reviewed genome sciences journal featuring outstanding original research that offers novel insights into the biology of all organisms
02910
Reposted by Doug Fowler
Joe Marsh @jmarshlab.bsky.social · 15/04/2025
New paper out in Genome Biology! 🎉 We lay out best-practice guidelines for releasing variant effect predictors, developed through the Atlas of Variant Effects Alliance @varianteffect.bsky.social Open, interpretable, and clinically useful VEPs are the goal. 📄 doi.org/10.1186/s130...
doi.org
Guidelines for releasing a variant effect predictor - Genome Biology
Computational methods for assessing the likely impacts of mutations, known as variant effect predictors (VEPs), are widely used in the assessment and interpretation of human genetic variation, as well...
23320
Reposted by Doug Fowler
Itai Yanai @itaiyanai.bsky.social · 14/04/2025
My guidelines for exploratory data analysis
310519
Reposted by Doug Fowler
Jess Ewald @ewaldlab.org · 31/03/2025
Two days left before the application closes!
032
Reposted by Doug Fowler
American Society of Human Genetics (ASHG) @geneticssociety.bsky.social · 24/03/2025
#ASHG is delighted to announce the appointment of Kiran Musunuru MD, PhD, as the new Editor-in-Chief of @ajhgnews.bsky.social. Join us in welcoming him ahead of the start of his tenure on January 1, 2026: www.ashg.org/publications... #ASHG
Kiran Musunuru MD, PhD
093
Reposted by Doug Fowler
Andrew Glazer @amglazer.bsky.social · 22/03/2025
It was great to attend the ACMG clinical genetics meeting for the first time, including a fun session on advances in cardiovascular genomics.
061
Reposted by Doug Fowler
Mike Schatz @mikeschatz.bsky.social · 18/03/2025
Still processing what this means. www.statnews.com/2025/03/17/t...
statnews.com
Eric Green is out as head of National Human Genome Research Institute
The longtime director of the National Human Genome Research Institute is stepping down, as the larger NIH braces for more changes.
85936
Reposted by Doug Fowler
Atlas of Variant Effects Alliance @varianteffect.bsky.social · 13/03/2025
📌🗓️ April 1st 2025 ℹ️ www.varianteffect.org/seminar-series #FunctionalGenomics #Seminar with Joyce Kang and Yiyun Rao
The image is a promotional poster for the "Variant Effects Seminar Series" taking place on April 1st, 2025. The top section has a blue pixelated background with white text stating the seminar details, including differing time zones. Below this, on a light background, two speaker portraits are prominently displayed in circular frames. Each portrait is accompanied by the speaker’s name in bold, dark blue text and their presentation title. On the left, an abstract DNA helix graphic in black adds a scientific element. The bottom section contains a Zoom link, additional information, and a QR code for direct access. A butterfly icon and a social media handle are included for contact.
052
Reposted by Doug Fowler
Atlas of Variant Effects Alliance @varianteffect.bsky.social · 06/03/2025
⏰❗Today (March 6) is the last day for early bird registration and abstract submission for the Mutational Scanning Symposium #VariantEffect25
011
Reposted by Doug Fowler
Jess Ewald @ewaldlab.org · 05/03/2025
🚨 We're hiring! 🚨 The Ewald Lab at EMBL-EBI is looking for a postdoctoral researcher in multi-omics, machine learning, and predictive toxicology to analyze a groundbreaking toxicology dataset as part of the OASIS Consortium. More details & application here: lnkd.in/eHD7DMdX
211556
Reposted by Doug Fowler
Nicky Whiffin @nickywhiffin.bsky.social · 28/02/2025
Today is #rareDiseaseDay2025 A chance to raise awareness, promote equality, drive progress, and together celebrate the amazing rare disease community, the people living with these conditions, and their carers. To mark the occasion, I want to share a story about this time last year. 🧵 1/8
Official picture for rare disease day 2025, with the text "I support Rare Disease Day"
1184
Reposted by Doug Fowler
Atlas of Variant Effects Alliance @varianteffect.bsky.social · 15/02/2025
Mutational Scanning Symposium "Mapping and Modelling Variant Effects at Scale" #VariantEffect25 🗓️ May 21-23, 2025 📍Barcelona (or online) Register soon to receive the early bird rate! ℹ️ www.varianteffect.org/mss2025
133
Reposted by Doug Fowler
Lara Muffley @muffley.bsky.social · 15/02/2025
#RareDiseaseDay (coming up on Friday, February 28, 2025) is a day dedicated to raise awareness of rare diseases and the people they affect. Tune in to this amazing podcast series that delves into the science behind mapping variants in diseases and rare diseases. www.varianteffect.org/podcast
The image showcases three separate podcast advertisement banners placed vertically. Each banner contains artwork on the left and text on the right. The top banner features a digital illustration of a double helix with scientific imagery and human figures on a teal background. The text reads "Variant Effect What?" for a podcast released on May 16. The middle banner, on a red background, depicts a circular illustration with intricate biological designs and a central glowing orb. The text states "Melanoma And Variant Effects: beyond sunscreen," dated June 6. The bottom banner, set on a teal background, presents another double helix with molecular designs. The text says "Your genes on drugs: context matters!" released on September 20.
0114
Reposted by Doug Fowler
Brotman Baty Institute @brotmanbaty.bsky.social · 12/02/2025
'Essential to the practice of precision medicine.' @uwmedicine.bsky.social piece examines BBI's global leadership in creating an atlas of genetic variant effects. @varianteffect.bsky.social @dougfowler.bsky.social @leastarita.bsky.social huddle.uwmedicine.org/mapping-gene...
huddle.uwmedicine.org
Mapping Genetic Variants and Their Ties to Disease - UW Medicine Huddle
Local Team Leads Global Research into Genomic Variants | UW Medicine Huddle
072
Reposted by Doug Fowler
Rachel 👩🏻‍🔬 @rachelbiology.bsky.social · 31/01/2025
Check out our updated preprint for MultiSTEP and coagulation Factor IX! This work highlights my most substantial contributions from my tech days in @dougfowler.bsky.social's lab 🧬 www.biorxiv.org/content/10.1...
biorxiv.org
Multiplex, multimodal mapping of variant effects in secreted proteins
Despite widespread advances in DNA sequencing, the functional consequences of most genetic variants remain poorly understood. Multiplexed Assays of Variant Effect (MAVEs) can measure the function of v...
011