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Michele Avissar-Whiting

@madubs.bsky.social
408 followers 178 following 127 posts

Director, Open Science Strategy @ HHMI My posts, my opinions

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Reposted by Michele Avissar-Whiting
Leah Houri-Zeevi @leahhouri.bsky.social · 25/09/2026
🩸🩸🩸TODAY WE SHARE TWO MAJOR DISCOVERIES🩸🩸🩸 1. We peered into genomes and brains of the rare mosquitoes that QUIT feeding on blood and found what biting is built from 2. Humans got rid of isoleucine in their blood, malaria suffers from it, and mosquito proteomes budget for it THREADS>
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Richard Sever @richardsever.bsky.social · 21/09/2026
"any answer to 'is AI good for science' that neatly fits into a single yes or no is unserious...here is an invitation to join the real discussion" Thoughtful piece by @blekhman.bsky.social on a subject that provokes knee-jerk responses for and against. blekhman.substack.com/p/the-ai-dis...
blekhman.substack.com
The AI Discourse in Academia is Toxic. It Doesn’t have to be.
You are allowed to have a nuanced opinion about AI
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Open Research Funders Group @orfg.bsky.social · 26/08/2026
ORFG members Michael J. Fox Foundation and @asapresearch.parkinsonsroadmap.org are leading the way with their access-to-research policies. Read more in this @sparcopen.bsky.social impact story. sparcopen.org/impact-story... #OpenScience #ResearchPolicy #OpenResearch
sparcopen.org
Parkinson’s Research Funders Lead the Way with Progressive Open Access and Open Science Policies - SPARC
To accelerate the understanding of Parkinson’s disease, improve treatment, and, ultimately, find a cure, two prominent funders in the field have recently expanded their requirements for grantees to…
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Reposted by Michele Avissar-Whiting
Richard Sever @richardsever.bsky.social · 13/08/2026
bioRxiv/medRxiv have been dealing with endless bot attacks recently (plus usual DDOS stuff, etc). Tricky to address without impacting genuine users - many of you affected. Apologies. We're working with our hosting service on solutions & think we're getting there [he shouts in his Red Queen costume].
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Open Research Funders Group @orfg.bsky.social · 17/08/2026
🎉 ORFG is pleased to welcome The Michael J. Fox Foundation for Parkinson's Research as its newest member! We're excited to have the foundation as an open science leader and collaborator in our community. www.orfg.org/news/2026/3/...
orfg.org
Michael J. Fox Foundation Joins ORFG — Open Research Funders Group
The Open Research Funders Group (ORFG) is pleased to welcome The Michael J. Fox Foundation for Parkinson’s Research (MJFF) as its newest contributing member.
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Michele Avissar-Whiting @madubs.bsky.social · 01/08/2026
"Once there is no need for humans to run the economy anymore, the AGI oligarchy begins harvesting the organic biosphere, including humans, as building materials and fuel for manufacturing a next generation of carbon-based AI systems." Happy Friday, y'all 📎 arxiv.org/pdf/2507.09369
arxiv.org
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Reposted by Michele Avissar-Whiting
Richard Sever @richardsever.bsky.social · 03/07/2026
Last month was another record for bioRxiv submissions. The pandemic surge and lag now clearly in the past and the growth continues. Thanks as ever to all the authors, readers affiliates, funders and amazing internal openRxiv team who make this happen!
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Reposted by Michele Avissar-Whiting
Harmit Singh Malik @harmitmalik.bsky.social · 24/06/2026
I know it seems like a heretical idea, but one way to figure out if a preprint is really interesting (to you) is... to read the preprint. Then, in the spirit of sharing, send a note to authors: a simple kudos or a more detailed question. I do this a dozen times a year. It's awesome. Try it.
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Michele Avissar-Whiting @madubs.bsky.social · 06/05/2026
No, we don't need better tools to detect AI - that horse bolted last year. We need to move upstream. Stop incentivizing volume, raise the bar for legitimacy, require verifiable provenance, and solve the identity validation problem. www.nature.com/articles/d41...
nature.com
How much of the scientific literature is generated by AI?
Tools for reliably estimating what artificial intelligence is being used for are still lacking.
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Richard Sever @richardsever.bsky.social · 29/04/2026
Despite its importance, peer review is something rarely taught. HHMI have a new peer review training program that takes advantage of preprints openrxiv.org/peer-review-...
openrxiv.org
Peer review training with preprints [Guest post] - openRxiv
About Guest Posts The openRxiv blog includes occasional guest posts on different aspects of science communication and open research. This allows us to provide space for new perspectives from groups pi...
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Michele Avissar-Whiting @madubs.bsky.social · 20/04/2026
"We propose a fundamental change in what counts: researchers should be assessed not by journal publications or journal-based metrics, but by the outputs they have publicly shared themselves..." HHMI's pitch for a healthier research assessment paradigm 🚀 zenodo.org/records/1960...
zenodo.org
Realigning incentives for biomedical researchers and journals through researcher-shared outputs
In this preprint the authors propose a shift in what counts in the biomedical sciences: researchers should be recognized for what they choose to share on their own terms and timeline (for example as p...
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Michele Avissar-Whiting @madubs.bsky.social · 16/04/2026
I think I'm not old enough to be watching Euphoria.
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Michele Avissar-Whiting @madubs.bsky.social · 16/04/2026
"Maybe truly revolutionary theories must follow that trajectory. If a scientific idea is young and it’s not cringe, it probably has no promise. But if it’s old and it’s still cringe, it probably has no merit." www.experimental-history.com/p/nothing-ev...
experimental-history.com
Nothing ever dies. It merely becomes embarrassing.
OR: the Halo theory of science
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Michele Avissar-Whiting @madubs.bsky.social · 31/01/2026
This is hands down the best article I've read on this topic: the imperative to transcend the superficiality of the pdf for research outputs. "This is the bridge from search to understanding: from “find me a paper about X” to “help me reason whether X applies in context Y.”
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Reposted by Michele Avissar-Whiting
Drug Monkey @drugmonkey.bsky.social · 13/01/2026
GLP-1 agonists (eg Ozempic) are showing promise to reduce alcohol drinking and perhaps opioid use. This is, of course, a potential therapeutic success which arises from the random walking of science, not an “efficient” directed research program.
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Richard Sever @richardsever.bsky.social · 12/01/2026
Preprints of pandemic potential - new historical piece from me on the history of bioRxiv/medRxiv, their role in the pandemic, and the way forward. 1/n journals.asm.org/doi/10.1128/...
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Helen Branswell 🇨🇦 @helenbranswell.bsky.social · 09/01/2026
Did slashing multiple vaccines from the childhood vaccine schedule bring the US in line with other countries? In a word, no. The US now recommends all kids be protected against fewer diseases than South Korea, Israel, Saudi Arabia, Taiwan & many more. www.statnews.com/2026/01/09/c...
statnews.com
When it comes to vaccine schedules, the U.S. is now the outlier
A STAT analysis of vaccine recommendations in 38 countries suggests the U.S. is now an outlier.
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Michele Avissar-Whiting @madubs.bsky.social · 09/01/2026
"[Our current ecosystem] treats shared infrastructure like a free beer rather than a free puppy." An important read on the dangers of open purism, though I'm not sure I agree with the ultimate conclusion. Maybe creative solutions will emerge. rosalynmetz.substack.com/p/openness-h...
rosalynmetz.substack.com
Openness Has Limits
Part 4 of a 5-part series on the politics of preservation and power.
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Michele Avissar-Whiting @madubs.bsky.social · 07/01/2026
I rarely appreciate a bumper sticker...
Bumper sticker that reads "How am I driving? How does an engine even work? How can a loving god cause such agony"
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Reposted by Michele Avissar-Whiting
Big Dracula Energy @mayawest.online · 31/12/2025
petition to make the entire winter as liminal as the space between Christmas and New Years.
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Michele Avissar-Whiting @madubs.bsky.social · 28/12/2025
Damn, Wendy’s
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Reposted by Michele Avissar-Whiting
Kenny Uong @kennyuong.bsky.social · 14/12/2025
Zoe Weissman - survivor of 2018 Marjory Stoneman Douglas High School shooting in Parkland, FL Mia Tretta - survivor of 2019 Saugus High School shooting in Santa Clarita, CA Both are now students at Brown University in Providence, RI.
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Michele Avissar-Whiting @madubs.bsky.social · 01/12/2025
"Reforms should be implemented in a coordinated and collective manner; otherwise, [those] who depart from journal-based metrics may risk a decline in international rankings, thereby reducing their competitiveness [...]." Ay, there's the rub utppublishing.com/doi/10.3138/...
utppublishing.com
Why the Current Model of Academic Publishing Is Ethically Flawed—and What We Can Do to Change It | Journal of Scholarly Publishing
This article offers a reasoned call for urgent reform of the academic journal publishing system. It focuses on the ethical flaws of the current for-profit model. This model enables the transfer of public funds into the profit margins of private companies that add no meaningful value to research and even limit access to knowledge. The article describes how feedback loops in metrics used in the evaluation of scientific publishing exacerbate structural inequalities and make it difficult to break out of the system. Moreover, the opportunity for easy profit attracts dishonest actors and fuels the rise of predatory journals, which in turn corrodes public trust in science. Without systemic reforms, the current system could also undermine artificial intelligence–driven research outcomes by enabling models to be trained on a growing number of substandard scientific publications. The article concludes with ten specific proposals for action, aimed at stimulating further discussion within and beyond academia.
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Dan Goodman @neural-reckoning.org · 27/11/2025
Nature Sci Rep publishes incoherent AI slop. eLife publishes a paper which the reviewers didn't agree with, making all the comments and responses public with thoughtful commentary. One of these journals got delisted by Web of Science for quality concerns from not doing peer review. Guess which one?
Two posts from Bluesky. The first one shows a figure from a paper published in Nature Scientific Reports full of totally incoherent AI fabricated gibberish words. The other a comment on a recently published paper by eLife discussing the paper and its peer reviews which were published along with the paper.
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Richard Sever @richardsever.bsky.social · 22/11/2025
Image screening is going to fail. We need audit trails for data provenance.
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Michele Avissar-Whiting @madubs.bsky.social · 21/11/2025
"The actors with real power are funders (government, foundations) and institutions, who can set the policies that determine what can be published where, and who shape the incentive structures used in promotion and hiring." blogs.lse.ac.uk/impactofsoci...
blogs.lse.ac.uk
Money, Time, Trust, Control – How commercial publishers drain science - Impact of Social Sciences
Have the interests of commercial publishers now become antithetical to the pursuit of knowledge?
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Michele Avissar-Whiting @madubs.bsky.social · 19/11/2025
We have to get serious about identity verification in scientific publishing. It is the fundamental problem at the core of many of the integrity issues we're seeing. I realize this is not straightforward... www.nytimes.com/2025/11/04/s...
nytimes.com
The Editor Got a Letter From ‘Dr. B.S.’ So Did a Lot of Other Editors.
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Ardem Patapoutian @ardemp.bskyverified.social · 07/11/2025
RIP Jim Watson. You inspired many of us to pursue a life in research. I wish you had made it easier for us to celebrate your legacy.
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Michele Avissar-Whiting @madubs.bsky.social · 01/11/2025
I’m finding I’m now at lot less likely to correct my kids’ grammar/phrasing for school assignments. Fuck it - at least it’s obvious they wrote themselves.
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Michele Avissar-Whiting @madubs.bsky.social · 18/10/2025
Some of y'all have never heard the thing about letting the perfect be the enemy of the good - and it shows.
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SPARC @sparcopen.bsky.social · 10/10/2025
We just posted an impact story on policies at HHMI, Gates & Astera promoting #OpenAccess #OpenScience #OpenData. Powerful signals to other funders to accelerate discovery in science. Well done @madubs.bsky.social @openaccessmaven.bsky.social @pracheeac.bsky.social! sparcopen.org/impact-story...
sparcopen.org
Funders Roll Out Next Gen Open Policies - SPARC
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Reposted by Michele Avissar-Whiting
Richard Sever @richardsever.bsky.social · 06/10/2025
New blog post. In which I analyze the new HHMI announcement and what it means for the science publishing ecosystem openrxiv.org/preprint-man...
openrxiv.org
Preprint mandates gather momentum - openRxiv
By Richard Sever, PhD. Chief Science & Strategy Officer, openRxiv Preprints speed up science by enabling researchers to disseminate reports of new findings immediately. They also represent a simple wa...
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Stowers Institute @stowersinstitute.bsky.social · 30/09/2025
(Part 1) Hear from @hhmi_news Investigator David Stern about his research program and what he's uncovering in the lab. Stern will join the Institute in February 2026, bringing his lab and HHMI appointment to Kansas City. @hhmi.org Read more: bit.ly/4np96Fb
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Michele Avissar-Whiting @madubs.bsky.social · 26/09/2025
Feeling profound gratitude for my incredible colleagues and getting to play a part in change that really matters. With the Immediate Access to Research policy, we are shifting our focus from journal-curated articles toward researcher-shared preprints. hhmicdn.blob.core.windows.net/policies/Imm...
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Health Nerd @gidmk.bsky.social · 24/09/2025
"Tylenol can't cause autism, autism came first!" This is a terrible argument, stop making it. There are GOOD arguments against the claim, but this is obviously missing the point and makes you sound extremely ignorant to anyone who has looked into the issue.
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Elisha Krieg @elishakrieg.bsky.social · 15/09/2025
AI can now generate fake microscopy images that are nearly impossible to detect. A serious threat to scientific integrity—and we’re not prepared for it. Commentary in @natnano.nature.com #nanotechnology
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Michele Avissar-Whiting @madubs.bsky.social · 20/08/2025
This year, my kid’s school has rolled out a house system a la Harry Potter. The houses are named for constellations: Phoenix, Hydra, Orion, Pegasus, and - wait for it - Draco! 😣 Yes, I know it’s the Dragon but was there no better option?! IYKYK
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Michele Avissar-Whiting @madubs.bsky.social · 20/08/2025
A lovely write-up of our panel at CSE on the Future of Scientific Editing and Publishing www.csescienceeditor.org/article/the-...
csescienceeditor.org
The Future of Scientific Editing and Publishing: Science Editor Symposium - Science Editor
MODERATOR:  Jonathan Schultz American Heart Association Editor-in-Chief, Science Editor SPEAKERS: Michele Avissar-Whiting Howard Hughes Medical Institute Chhavi Chauhan American Society for Investigat...
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The Transmitter @thetransmitter.bsky.social · 13/08/2025
FlyBase, a Drosophila database, will lose a third of its team in early October because the Harvard grant that covered the employees’ salaries was canceled. Scientists warn that losing FlyBase could devastate fly research. By @claudia-lopez.bsky.social www.thetransmitter.org/community/ha...
thetransmitter.org
Harvard University lays off fly database team
The layoffs jeopardize this resource, which has served more than 4,000 labs for about three decades.
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Kayla B @queenofthesouth.bsky.social · 13/08/2025
Dolly Parton has sent my daughter a new book every month for years as she does for thousands of children. She help fund the development of the Covid vaccine. She’s not a billionaire. I think as non wealthy people it’s hard to even imagine how much billionaires *could* be doing with their money.
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Michele Avissar-Whiting @madubs.bsky.social · 07/08/2025
"A system that showcases only the sanitized outcomes of editorial selection gives us just half the picture. We can – and must – aim higher." blogs.lse.ac.uk/impactofsoci...
blogs.lse.ac.uk
Nature’s decision to publish positive peer review reports only gives half the picture - Impact of Social Sciences
As the journal Nature moves to publish peer review reports for accepted papers, Bodo Stern argues this partial openness falls short of true transparency.
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James Fraser @fraserlab.com · 11/07/2025
Academia may be a prestige economy but it wasn’t some choice of scientific leadership- we do it to ourselves, every day. Leadership rarely makes tenure criteria too down - it’s a committee of peers that sets it up for institutions. Leadership doesn’t sit on study sections - it’s peers doing it!
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Kieron Gillen @kierongillen.bsky.social · 08/07/2025
I’m petrified about today’s science news. Genetically modifying crabs to have cheetah genes? This could go sideways fast.
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Michele Avissar-Whiting @madubs.bsky.social · 05/07/2025
Possibly the most worrying part of this story is that the authors using this hack are assuming that reviewers are using LLMs to write their reviews (and they're probably right) 😣 asia.nikkei.com/Business/Tec...
asia.nikkei.com
'Positive review only': Researchers hide AI prompts in papers
Instructions in preprints from 14 universities highlight controversy on AI in peer review
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Paolo Crosetto @paolocrosetto.bsky.social · 15/06/2025
Springer-Nature launched a series of "Discover" journals that closely mimic MDPI titles -- sharing *identical* journal names, and likely similar business model. What is going on, and why researcher will - as always - fall for it? A 🧵 the-strain-on-scientific-publishing.github.io/website/post...
the-strain-on-scientific-publishing.github.io
Springer Nature Discovers MDPI – The Strain on Scientific Publishing
Home page for the paper ‘The Strain on Scientific Publishing’ by Mark A Hanson, Dan Brockington, Paolo Crosetto and Pablo Gomez Barreiro
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Adam Sternbergh @sternbergh.bsky.social · 05/06/2025
must be incredibly frustrating and disheartening to have federal funding that was promised to you for important work suddenly and arbitrarily ripped away
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Michele Avissar-Whiting @madubs.bsky.social · 03/06/2025
Brilliant
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lastpositivist.bsky.social @lastpositivist.bsky.social · 25/05/2025
It's all so farcical. Nobody could seriously believe that there's some plan here which goes step 1: cancel all foreign student visas at Harvard, step 2: ?????, step 3: increase replication rates in biology. The lie is so transparent as to be insulting.
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Gillian Branstetter @gbbranstetter.bsky.social · 20/05/2025
The level of surveillance and policing demanded by transphobia will always be more disruptive to your life than the rights and demands of trans people ourselves
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