A rust implementation of STAR. Contribute to scverse/rustar-aligner development by creating an account on GitHub.

Frameworks, formats and Interoperability

The NOMIS Foundation, in collaboration with the DFG-funded Munich Cluster for Systems Neurology (SyNergy), invites exceptional early-career scientists from around the world to apply for elite…

The European Molecular Biology Laboratory (EMBL) is Europe’s life sciences laboratory – an intergovernmental organisation with more than 110 independent research groups and service teams covering the ...

Gene regulatory networks encode the fundamental logic of cellular functions, but systematic network mapping remains challenging, especially in cell states relevant to human biology and disease. Here, ...

Motivation: Single-cell sequencing data analysis requires robust quality control (QC) to mitigate technical artifacts and ensure reliable downstream results. While tools like alevin-fry and simpleaf (...

The MackeLab is a research group at the Excellence Cluster Machine Learning at Tübingen University!

Automatically annotate cell types, consistently across samples. - quadbio/cell-annotator

Multimodal weakly supervised learning to identify disease-specific changes in single-cell atlases - theislab/multimil

Practitioners in the field of single-cell omics are now faced with diverse options for analytical tools to process and integrate data from various molecular modalities. In an Expert Recommendation art...

Version 1.11: 1.11.0 2025-02-14: Release candidates: rc2 2025-01-24, rc1 2024-12-20. Features: rc1 sample() supports both upsampling and downsampling of observations and variables. subsample() is n...

A Nextflow pipeline to play Doom. Contribute to nextflow-io/doom development by creating an account on GitHub.

We're pleased to announce the next Scverse Hackathon will take place in the Owkin offices in Paris from 17/03/2025 9am to 19/03/2025 1:30pm. This hackathon is a joint initiative between the scverse c...

Perturbation Analysis in the scverse ecosystem. Contribute to scverse/pertpy development by creating an account on GitHub.

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Computational biology is undergoing a revolution. Recent advances in microfluidic technology enable high-throughput and high-dimensional of individual cells at unprecedented scale. But there’s a…

A human neural organoid cell atlas integrating 36 single-cell transcriptomic datasets shows cell types and states and estimates transcriptomic similarity between primary and organoid counterparts, sho...