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Kyle MacLea 🦠

@kmaclea.bsky.social
1.5K followers 1.5K following 115 posts

I study microbes (#Bacteria, #Phages) but love the whole #TreeOfLife @UofNH @UNHManchester associate professor #MicrobialGenomics #ScienceEd (he/him/his)

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Kyle MacLea 🦠 @kmaclea.bsky.social · 30/09/2026
A new primary endosymbiosis lineage is awesome. I enjoyed this.
onlinelibrary.wiley.com
Crawling under the radar: Two novel <fi>Paulinella</fi> species expand knowledge about the ecology and evolution of a primary plastid‐containing amoeba lineage
The genus Paulinella represents a rare, independent case of primary endosymbiosis, providing a unique system to study the early stages of organelle evolution. Here, we expand current understanding of...
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Kenneth Loi @kenjmloi.bsky.social · 18/09/2026
VIPR is now out in Science! What started with a mysterious RNA led us to an unexpected way of recognizing DNA, as well as some clues to CRISPR’s origins. So happy to share these two papers with an incredible team. Links below; original discovery thread here ↓
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Alex Ip 葉清霖 @alexip718.com · 01/09/2026
Ahem
Jamelle Bouie: 

the question to ask about this is, okay, he wants to cancel the midterms. how does he get the VA state board of elections to cancel the midterms? how does he get the georgia board of elections to do it? how does he convince republican house members to quit their jobs and give up their paychecks?

Me, quote posting Jamelle Bouie from seven months ago:

My hypothesis is that Trump will demand the Postmaster General to refuse delivering and collecting mail ballots, which would make free and fair elections practically impossible in the Western states
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STCmicrobeblog @stcmicrobeblog.bsky.social · 26/08/2026
ribosomologists of all colors take note 👇 a 28S rRNA variant that does not promote mRNA translation but 𝗶𝗻𝗵𝗶𝗯𝗶𝘁𝘀 it by blocking of the ribosomal exit tunnel 👀 «everything that can be regulated will be regulated» (murphy's law of molecular biology)
Figure 3. ... (c) Three-dimensional structure of the canonical P. falciparum A-type ribosome (left, PDB: 9J9H) and detailed view of the ribosomal exit tunnel (right). The insertion site of the LSUFPTC hairpin is highlighted in red (see also panel a).
source: https://www.biorxiv.org/content/10.64898/2026.06.17.732804v2.full
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Gulnara Tagirdzhanova @metalichen.bsky.social · 11/08/2026
Our study on giant transposons Starship 🚀🧬 in the genome of the lichen fungus Xanthoria is now out in @pnas.org! What did we find out about Starships in #lichen fungi? 👇Updated thread below 🖥️ 🧪 🦠 🧫 #SymbioSky 1/6 www.pnas.org/doi/10.1073/...
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Vaughn Cooper @vscooper.micropopbio.org · 26/07/2026
In 2014, Jason Rosch and I met at a GRC in Tuscany and sketched an idea on a cocktail napkin: what if we evolved S.pneumo in mice, treated them with antibiotics, varied their immune systems and watched what won? 11 years and a huge team effort later, it's out in @cp-cellhostmicrobe.bsky.social 🧵
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Michael Clemens @mclem.org · 18/07/2026
Yesterday the US Administration supercharged its explicit effort to bar international students from staying in the US after graduation. All Americans should know: 1/3 of *all* STEM PhDs working in the US are immigrants who graduated from US universities, then stayed. www.piie.com/index%2Ephp/...
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Kyle MacLea 🦠 @kmaclea.bsky.social · 06/06/2026
Couldn’t make this one but I was super interested to hear more—so cool!
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Jacquelyn Gill @jacquelyngill.bsky.social · 13/05/2026
On NSF’s postdoc page, the biology and earth science fields have been completely eliminated; the only remaining fellowships are in math, astronomy, engineering, and “entrepreneurship.” Weird choice not to support research on the life support system for 8 billion people. www.nsf.gov/funding/post...
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Kyle MacLea 🦠 @kmaclea.bsky.social · 06/05/2026
Man is constantly happy to see us suffer. Why else the constant smile?
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Ashwin Varma @ashwinvarma97.bsky.social · 05/04/2026
Here are a couple of examples. Lung cancer survival rates for EGFR+ mutated Lung cancer.
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Jed Brown @jedbrown.org · 02/03/2026
And yet universities continue behaving as though a heartfelt plea to Russ Vought will convince this administration on the merits to stop impounding funds and dismantling the agencies.
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Avigail Stokar-Avihail @aavihail.bsky.social · 05/02/2026
Two independent super-elegant studies from Maxwell & Laub labs find immune proteins that sense infection by binding to oligomeric phage protein rings (i.e phage portal), using them as a scaffold to assemble into their active immune effector form 🤯 Highly recommend read! 🤓📖l
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Tara C. Smith @aetiology.bsky.social · 27/01/2026
Had not heard that Duesberg had passed. One of the century's mass murderers.
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Tominaga K. (tomiken) @pacyc184.bsky.social · 19/01/2026
A family of archaeal hibernation factors that bind in tandem and protect ribosomes in dormant cells | bioRxiv www.biorxiv.org/content/10.64898/20…
biorxiv.org
A family of archaeal hibernation factors that bind in tandem and protect ribosomes in dormant cells
Under nutrient limitation or stress, ribosome hibernation factors inactivate and protect ribosomes. Although ribosome hibernation plays an important role in microbes, we lack a complete understanding of this process in archaea. Here, we identify a family of hibernation factors, which we designate as single ribosomal subunit inhibitors (SriA- SriD), from the methanogenic archaeon Methanosarcina acetivorans . All four sri genes are encoded in an operon and each Sri protein inhibits protein synthesis in vitro . Deletion of sri genes in M. acetivorans impaired growth recovery after prolonged stationary phase and also led to depletion of the small ribosomal subunit. Cryo-EM structures show that Sri proteins bind to the ribosome in tandem and form conserved protein-protein interfaces. Sri is broadly distributed across archaeal phyla and sri genes frequently co-occur. Together, these findings establish Sri proteins as a distinct group of hibernation factors that protect ribosomes during dormancy and expand our understanding of ribosome hibernation in archaea. ### Competing Interest Statement The authors have declared no competing interest. U.S. National Science Foundation, https://ror.org/021nxhr62, CHE-2002182 National Institutes of Health, https://ror.org/01cwqze88, 5T32GM132022 Life Sciences Research Foundation, https://ror.org/0195dxj21 Arnold and Mabel Beckman Foundation, https://ror.org/05avmtm72 Alfred P. Sloan Foundation, https://ror.org/052csg198 Simons Foundation, https://ror.org/01cmst727 David and Lucile Packard Foundation, https://ror.org/032atxq54 Chan Zuckerberg Biohub San Francisco
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Kyle MacLea 🦠 @kmaclea.bsky.social · 18/01/2026
I bet he really knows where his towel is!
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H. B. Beryl Rappaport @hbrappap.bsky.social · 25/11/2025
So happy to announce our new preprint, “A geothermal amoeba sets a new upper temperature limit for eukaryotes.” We cultured a novel amoeba from Lassen Volcanic NP (CA, USA) that divides at 63°C (145°F) 🔥 - a new record for euk growth! #protistsonsky 🧵
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Jeremy Berg @jeremymberg.bsky.social · 15/11/2025
@standupforscience.bsky.social #StandWithJenna 2/2
“The Trump administration is burning down our country’s most important public health agencies from the inside and pushing out anyone who dares to pull the fire alarm. Standing up for science is not a fireable offense and it should be seriously troubling to everyone who wants America to remain the world leader in biomedical research that this administration is not only running the NIH into the ground, but punishing anyone who has the courage to speak up about their concerns. When Director Bhattacharya testified before Congress in June, I made clear that not one employee who signed the Bethesda Declaration should face retaliation—yet that’s exactly what appears to be happening this week.
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Drug Monkey @drugmonkey.bsky.social · 19/10/2025
Dismantling the Institutional Review Board (IRB), that oversees all human subjects research, is bad. Really bad.
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jentrification ♎ @jentrification.com · 16/10/2025
New student loan limits could change who gets to become a professor, doctor or lawyer
theconversation.com
New student loan limits could change who gets to become a professor, doctor or lawyer
Tighter federal borrowing limits may deepen inequities, especially for students from underrepresented backgrounds.
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Suzanne Conklin Akbari @sakbari.bsky.social · 11/10/2025
“Private equity billionaire Marc Rowan was revealed last week to be the driving force behind a Trump administration campaign pressuring nine major U.S. universities. Apollo Global Management, which Rowan co-founded in 1990, own[s] the for-profit University of Phoenix.”
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Kyle MacLea 🦠 @kmaclea.bsky.social · 05/10/2025
@markowenmartin.bsky.social
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Evgenii Protasov @evgenii-protasov.bsky.social · 28/09/2025
Polysaccharide-degrading archaea dominate acidic hot springs: genomic and cultivation insights into a novel Thermoproteota lineage Candidatus Marsarchaeota is now isolated and renamed as Tardisphaerales (phylum Thermoproteota) 🤓 @asm.org journals.asm.org/doi/10.1128/...
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Kyle MacLea 🦠 @kmaclea.bsky.social · 28/09/2025
Is there an Omaha of the Rockies or something? :) That circle for Omaha (if Nebraska) seems way far west, unless it’s not to scale.
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Ryan Marino, MD @ryanmarino.bsky.social · 16/09/2025
~40% of Hepatitis B infections are caught in childhood. It is contagious enough that it can be spread just from sharing common household objects. The chance of chronic infection (ie does not clear, and is associated with high rates of liver failure and cancer) ranges from 50%-90% in this age group.
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Quanta Magazine @quantamagazine.org · 10/09/2025
Lokiarchaea are tricky to work with in the lab: they grow very slowly, exclusively in an oxygen free environment with the presence of symbiotic bacteria. But with careful nurturing, scientists hope to witness their cell division at work.
quantamagazine.org
Tiny Tubes Reveal Clues to the Evolution of Complex Life | Quanta Magazine
Scientists have identified tubulin structures in primitive Asgard archea that may have been the precursor of our own cellular skeletons.
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Kyle MacLea 🦠 @kmaclea.bsky.social · 09/09/2025
Sometimes I find myself in some kind of teaching fugue State where the metaphors and analogies come fast and furious too! Sometimes I feel like I could never really capture all of those a second time!
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Jim Shaw @jimshaw.bsky.social · 08/09/2025
Preprint out for myloasm, our new nanopore / HiFi metagenome assembler! Nanopore's getting accurate, but 1. Can this lead to better metagenome assemblies? 2. How, algorithmically, to leverage them? with co-author Max Marin @mgmarin.bsky.social, supervised by Heng Li @lh3lh3.bsky.social 1 / N
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James McInerney @jomcinerney.bsky.social · 07/09/2025
Extraordinary paper. I LOVE this sentence: “This translates to a net lateral gene transfer rate of ~250 genes L−1 seawater day−1 and involves both “flexible” and “core” genes. “ Must read in detail, but these numbers are amazing. academic.oup.com/ismej/advanc...
academic.oup.com
Net rate of lateral gene transfer in marine prokaryoplankton
Abstract. Lateral gene transfer is a major evolutionary process in Bacteria and Archaea. Despite its importance, lateral gene transfer quantification in na
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Andrew Roger @andrewjroger.bsky.social · 25/08/2025
I gave a symposium talk at the European Society for Evolutionary Biology 2025 (#eseb2025) meeting last week and this was my title slide showcasing how I was speaking as an independent scientist because @dalhousieu.bsky.social @dalhousie.bsky.social has locked us out.
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Kyle MacLea 🦠 @kmaclea.bsky.social · 25/08/2025
Yeah almost no one!
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ᐯIᑕTOᖇ ᑎIᘔET, ᗰᗪ @nizet.bsky.social · 15/08/2025
Saddened to learn of the passing of Moselio "Elio" Schaechter—Distinguished Professor at Tufts, SDSU and UCSD—humanist and visionary leader in the fields of microbiology and scientific communication—mentor, friend, and inspiration to me and so many others Small Things Considered Big Things Achieved
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Dr. David Miller 🏳️‍🌈 @davidimiller.bsky.social · 14/08/2025
🧪 Update: NSF will *appeal* an earlier court order that blocked 15% indirect rates. I'm mostly surprised it took this long for them to file an appeal. So the fight continues. See: storage.courtlistener.com/recap/gov.us... Article from June as context: www.insidehighered.com/news/quick-t...
storage.courtlistener.com
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Jacquelyn Gill @jacquelyngill.bsky.social · 10/08/2025
Do you love alpine plants, ancient DNA, and/or population genetics? My lab will be hiring a postdoc soon to be based at the University of Maine! We’re looking for someone who uses genetic tools and thinks like a community ecologist. Happy to chat at #ESA2025 if you’re interested.
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Michalis Averof @michalis-averof.bsky.social · 08/08/2025
Latest paper elifesciences.org/articles/107... closes an important cycle in our efforts to study regeneration: week-long recordings allow us to observe the behaviour of cells during the entire course of regeneration in a crustacean leg – bright objects in movie are fluorescent nuclei of cells. 1/6
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Phil PlAIt @philplait.bsky.social · 03/08/2025
W T A F This country is a joke. A very, very terrible joke.
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Kyle MacLea 🦠 @kmaclea.bsky.social · 29/07/2025
History of the English Language was fascinating. Intro to Linguistics too!
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Laura Helmuth @laurahelmuth.bsky.social · 28/07/2025
Bacteria from a Yellowstone hot spring do something no other organism has been found to do: breathe oxygen and sulfur at the same time. 🧪 It's both aerobic and anaerobic, a beautiful freaky creature from a beautiful freaky place
quantamagazine.org
The Cells That Breathe Two Ways | Quanta Magazine
In a hot spring at Yellowstone National Park, a microbe does something that life shouldn’t be able to do: It breathes oxygen and sulfur at the same time.
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Aude Bernheim @audeber.bsky.social · 24/07/2025
🦠🧍‍♀️From bacterial to human immunity. We report in @science.org the discovery of a human homolog of SIR2 antiphage proteins that participates in the TLR pathway of animal innate immunity. Co-led wt @enzopoirier.bsky.social by D. Bonhomme and @hugovaysset.bsky.social www.science.org/doi/10.1126/...
science.org
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Katelyn Burns @katelynburns.com · 24/07/2025
it's never been about antisemitism
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Kyle MacLea 🦠 @kmaclea.bsky.social · 22/07/2025
Once as postdoc/lab manager I asked the PI for help with setting the large floor centrifuge that I hadn’t used before. He set the rotor wrong and sheared off the pins, and centrifuge was out of commission for months. VERY glad it wasn’t me! 😅
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Kyle MacLea 🦠 @kmaclea.bsky.social · 19/07/2025
Very cool! One of my last pups was very picky as he got older and this would have been helpful I think!
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Kyle MacLea 🦠 @kmaclea.bsky.social · 19/07/2025
Wow didn’t know this kind of stuff existed for dogs!
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Gretchen Goldman, PhD @gretchentg.bsky.social · 19/07/2025
Terrible Friday news dump.The wealth of expertise. The decades of scientific progress. The emerging and urgent challenges we were focused on tackling. It is all so short-sided and cruel. www.nytimes.com/2025/07/18/c...
nytimes.com
E.P.A. Says It Will Eliminate Its Scientific Research Arm
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ᐯIᑕTOᖇ ᑎIᘔET, ᗰᗪ @nizet.bsky.social · 13/07/2025
M⃣I⃣S⃣S⃣I⃣N⃣G⃣ L⃣I⃣N⃣K⃣S⃣ 𝙉𝙖𝙩𝙪𝙧𝙚 paper by Sikora et al: metagenomic data from 1,313 ancient human remains over 37,000 years Identified >3,000 instances of known human pathogens Zoonotic pathogens begin to appear ~6,500 years ago coinciding with the rise of livestock domestication—major epidemiological shift
nature.com
The spatiotemporal distribution of human pathogens in ancient Eurasia - Nature
Screening shotgun-sequencing data from ancient humans covering 37,000 years of Eurasian history uncovers the widespread presence of ancient bacterial, viral and parasite DNA and zoonotic pathogens coi...
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Kyle MacLea 🦠 @kmaclea.bsky.social · 13/07/2025
Thanks!
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Kyle MacLea 🦠 @kmaclea.bsky.social · 12/07/2025
WTF? How did the faculty not get rather worked up about this change?
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Kyle MacLea 🦠 @kmaclea.bsky.social · 12/07/2025
Would like to do it the RIGHT way! Nice job!
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Kyle MacLea 🦠 @kmaclea.bsky.social · 12/07/2025
Yeah the only half I did (I didn’t really train for) and my feet felt like hamburger after! 😆
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Kyle MacLea 🦠 @kmaclea.bsky.social · 12/07/2025
Nice!!
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