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Jakke Neiro

@jakkeneiro.bsky.social
267 followers 529 following 108 posts

Postdoc, András Simon Lab, Karolinska Institutet @ki.se - DPhil, University of Oxford @biology.ox.ac.uk - Regeneration - Salamander Sorcerer - Worm Wizard - Embryo '24 linktr.ee/jakkeneiro

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Reposted by Jakke Neiro
Nicolas Di-Poi @nicolasdipoi.bsky.social · 31/08/2026
Ever wondered why snake embryos coil?🐍 A beautifully simple question with a fascinating answer: a growth mismatch between body & gut shapes the coil Our study from @helsinki-biotech.bsky.social @helsinki.fi with T. Miyashita & R.E. Diaz in @currentbiology.bsky.social www.cell.com/current-biol...
cell.com
How snake embryos coil
Snake embryos coil, but how and why they corkscrew remains unexplored. Weber et al. find that the embryos wind up clockwise via buckling of the rapidly elongating axial body against the slow-growing, ...
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Maria Antonietta Tosches @matosches.bsky.social · 27/07/2026
Excited to share a new preprint from the lab, by @andrewmatheson.bsky.social and team, where we dive into the superpower of newts: plasticity! www.biorxiv.org/content/10.6... Like many good projects, this started with a serendipitous observation... 🧵1/5
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Zebrafish Rock! 🎃 @zebrafishrock.bsky.social · 03/07/2026
Everyone might need to update medaka from “non-regenerative” to “slightly less-regenerative” 😬 New work from @nadiamercader.bsky.social et al. 🐟🫀 #zebrafish #medaka 🔗 www.nature.com/articles/s41...
nature.com
Comparison of cardiac regeneration capacity between zebrafish and medaka reveals a regenerative response in both teleost species - npj Regenerative Medicine
npj Regenerative Medicine - Comparison of cardiac regeneration capacity between zebrafish and medaka reveals a regenerative response in both teleost species
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Anna Czarkwiani @aniaczark.bsky.social · 01/07/2026
We're very excited to announce the official launch of the Journal of Regeneration. Together with the amazing team from @pensoft.net and my two co-EICs Loriano Ballarin and Buki Rinkevich, it is such a pleasure to share this new platform for bringing together the regeneration biology community.
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Journal of Regeneration
 Journal of Regeneration is an international peer-reviewed, Open Access journal aiming to provide a platform for the dissemination of research results on regeneration and tissue repair across phy...
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Jakke Neiro @jakkeneiro.bsky.social · 27/06/2026
Maybe that family farm in Ostrobothnia with 18C is going to be worth something, after all.
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J Pardo @jdpardo.bsky.social · 18/06/2026
New in @science.org ...since our first discoveries of early tetrapods, they have been thought of as "amphibians" characterized by aquatic larvae. But is this true? For the first time, we report exceptional fossils of stem tetrapod babies that upend this paradigm. 1/n www.science.org/doi/10.1126/...
science.org
Direct development of stem tetrapods across the fin-to-limb transition
Modern amphibians are characterized by an aquatic larval stage that ends abruptly with a period of widespread tissue remodeling (metamorphosis) upon transition to terrestrial adulthood. A transient la...
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paveltomancak.bsky.social @paveltomancak.bsky.social · 18/06/2026
Big paper from @hejnol.bsky.social lab. Title says it all. Congrats, Stanislav Kremnyov and the team. www.nature.com/articles/s41...
nature.com
A blastoporal organizer in a ctenophore - Nature
Experiments using the comb jelly Mnemiopsis leidyi and the sea anemone Nematostella vectensis reveal that the emergence of a core signalling pathway may have been a key innovation enabling the transit...
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Wouter Masselink @woutermasselink.bsky.social · 24/05/2026
🚨 New preprint 🚨 Massive shoutout to first author @abinagui.bsky.social !!! The common view is that regenerative competence declines with age. We challenge this idea by showing that axolotl tail regenerative competence is emerges during a defined embryonic window. www.biorxiv.org/content/10.6...
biorxiv.org
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Berta Verd @bertaverd.bsky.social · 21/04/2026
New Pre-Print Alert! Evolving initial conditions: an alternative developmental route to morphological diversity with Shannon Taylor and @jamesehammond.bsky.social www.biorxiv.org/content/10.6...
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canaztekin.bsky.social @canaztekin.bsky.social · 10/04/2026
🚨 Why can’t mammals regenerate limbs like frog tadpoles or salamanders? In our new paper in @science.org , we show that species-specific oxygen sensing acts as a gatekeeper for initiating limb regeneration 🐭🐸 🔗 www.science.org/doi/10.1126/... #EvoDevo
science.org
Species-specific oxygen sensing governs the initiation of vertebrate limb regeneration
Why mammals cannot regenerate limbs like amphibians do presents a long-standing puzzle in biology. To uncover the underlying differences, we compared amputation responses of embryonic mouse (Mus musculus) and Xenopus laevis tadpole limbs. Lowering ...
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Antonia Weberling @a-weberling.bsky.social · 07/04/2026
PREPRINT ALERT !!! Excited to share our #reptile #embryo cryopreservation method optimised on peri-gastrulation veiled chameleon embryos! This lays the foundation for functional studies & reptile #conservation efforts! #devbio #squamates #evodevo www.biorxiv.org/content/bior...
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The Royal Society @royalsociety.org · 07/03/2026
In 1928, Sidnie Manton FRS published ‘On the embryology of a mysid crustacean, Hemimysis lamornae’, a landmark paper in descriptive arthropod embryology. See more on our #WomenInSTEM publishing timeline: royalsociety.org/news-resources/wom…
a scientific diagram in black and white showing sections of embryos of Hemimysis lamornae, a small shrimp-like crustacean that lives in the seas around the UK.
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Nikos Konstantinides @nkonst4.bsky.social · 10/01/2026
I am very happy (and a bit scared) to present to you what we have been working on over the last 4 years. This manuscript is exactly what I dreamt of when I started the lab and I could not be happier and prouder of the outcome!
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Tatiana Sandoval Guzmán @tatianasg.bsky.social · 26/02/2026
Just published from our group! Study of a family of genes, one of them previously associated to regeneration in axolotls (Kazald2) and now we associate its expression during regeneration ancestral of bony vertebrates. www.cell.com/iscience/ful...
cell.com
Differential fates of Kazald gene quartet: Ancestral roles in skeletogenesis and regeneration to putative innovations in fish and birds
Natural sciences; Evolutionary biology; Evolutionary developmental biology; Evolutionary history
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Margarida Cardoso Moreira @margaridamcm.bsky.social · 25/02/2026
Our internal organs are evolutionary marvels. New technologies are transforming our understanding of the evolution of vertebrate organs. You can find more by reading here: rdcu.be/e5EgU #EvoBio #EvoDevo 🐟🦎🐢🦇🐊🦜
rdcu.be
The molecular evolution of vertebrate organs
Nature Ecology & Evolution - This Review discusses recent advances in the molecular evolution of vertebrate organs, including rates of evolution of organs and cell types, molecular mechanisms...
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EMBO @embo.org · 14/12/2025
Investigate regeneration and repair using whole animals or organ/tissue systems at EMBO Workshop "The molecular and cellular basis of #regeneration and #TissueRepair" in #Krems, AT, 21–25 Sep 2026. Deadline: 20 May meetings.embo.org/event/26-tissue-r… #EMBORegeneration #EMBOevents 🧪
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Rottinger Lab @rottingerlab.bsky.social · 17/12/2025
Stoked that this paper, summarizing a vast series of experiments from past and present members of the team is out. A great way to end this year. www.nature.com/articles/s41...
nature.com
Whole body regeneration deploys a rewired embryonic gene regulatory network logic - Nature Communications
To what extent regeneration recapitulates embryonic development is a longstanding question. Here, they show that embryonic gene modules are re-used, rewired, and interconnected to specific injury-indu...
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Roger Revilla-i-Domingo @revillalab.bsky.social · 11/12/2025
Proud of organizing the EMBO Regeneration Workshop 2026 in Krems, in the heart of Austria, together with @simoesfilipa.bsky.social, @jordisolana.bsky.social, Anna Jazwinska, Mansi Srivastava, MaxYun and Juanma González-Rosa! Registration is open! #EMBORegeneration meetings.embo.org/event/26-tis...
meetings.embo.org
The molecular and cellular basis of regeneration and tissue repair
Over the past decades, this EMBO Workshop on Regeneration & Tissue Repair has become the key international meeting for scientists investigating basic biological questions in regeneration and repa…
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Jacob Schreiber @jmschreiber91.bsky.social · 10/12/2025
After a huge amount of work w/ @alex-stark.bsky.social's group, a new version of our Ledidi preprint is now out! In an era of AI-designed proteins, the next leap will be controlling when, where, and how much of these proteins are expressed in living cells. www.biorxiv.org/content/10.1...
biorxiv.org
Programmatic design and editing of cis-regulatory elements
The development of modern genome editing and DNA synthesis has enabled researchers to edit DNA sequences with high precision but has left unsolved the problem of designing these edits. We introduce Le...
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Benjamin Friedrich @friedrich-group.bsky.social · 26/11/2025
Axolotl can regrow lost limbs, matching their body size. How? Our new theory-experiment paper in @pnas.org proposes how oppositely oriented morphogen gradients scaling with animal size promote proportional growth. Great collaboration with @tatianasg.bsky.social @cmcb-tud.bsky.social
Schematic of limb regeneration in axolotl, with growth controlled by two oppositely oriented morphogen gradients (SHH, FGF8).
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Jakke Neiro @jakkeneiro.bsky.social · 01/12/2025
1880s kids most likely had a better understanding of organismal structure
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Tessmar-Raible Labs @tessmarraiblelabs.bsky.social · 01/12/2025
Freshly out at @natcomms.nature.com ! Our @univie.ac.at @awi.de @viennabiocenter.bsky.social @ercgrantees.bsky.social research into neurogenic plasticity of adult worm brains, and similarities in stem cells supporting growth of camera-type eyes. www.nature.com/articles/s41... [1/7]
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Fabian Rentzsch @fabianrentzsch.bsky.social · 18/11/2025
Our paper on the role of neurons in Nematostella head regeneration is now out at @currentbiology.bsky.social Big thank you to all collaborators, it was a pleasure! Ectopic head regeneration after nervous system ablation in a sea anemone: Current Biology www.cell.com/current-biol...
cell.com
Ectopic head regeneration after nervous system ablation in a sea anemone
Via genetic ablation of neurons, Mazloumi Gavgani et al. show that the nervous system is essential for defining axial polarity during whole-body regeneration in the sea anemone Nematostella vectensis.
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Jakke Neiro @jakkeneiro.bsky.social · 03/11/2025
Exactly. So that I know when to avoid it.
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Jakke Neiro @jakkeneiro.bsky.social · 01/11/2025
Ylen jutusta "Suomalaisilla opiskelijoilla on korkeakouluopintojen alussa keskimäärin paremmat kriittisen ajattelun taidot kuin yhdysvaltalaisten verrokkiyliopistojen opiskelijoilla. Alemman korkeakoulututkinnon loppuvaiheessa merkittävää osaamiseroa ei enää ole."
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Allan Carrillo-Baltodano @allancarbal.bsky.social · 31/10/2025
The Spiralian Organiser (enriched with dpERK1/2) 🪱🎃🪱🎃🪱 #DevBio #EvoDevo #SciArt
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Jakke Neiro @jakkeneiro.bsky.social · 31/10/2025
*almost* all What is the unit of morphological evolution, and how many of these units amount to almost all?
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Mathieu Preußner @mathpreu.bsky.social · 31/10/2025
Can't believe it — my first‑author paper is out and my image graces the cover of @dev-journal.bsky.social 🎉 Here, we reveal how early developmental programs shape and maintain #zebrafish gill architecture throughout life 🔗 journals.biologists.com/dev/issue/15... #FluorescenceFriday #LifelongDevSI
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INOUE, Takeshi @planarian-brain.bsky.social · 28/10/2025
Exploring the potential of Schmidtea mediterranea as a model for reproductive toxicity through analysis of sterility caused defective m6A RNA regulation - ScienceDirect www.sciencedirect.com/science/arti...
sciencedirect.com
Exploring the potential of Schmidtea mediterranea as a model for reproductive toxicity through analysis of sterility caused defective m6A RNA regulation
Development of alternative methods for analysis of reproductive toxicity is a challenge that requires the characterization of mechanistic endpoints li…
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Leslie Anthony @docleslie.bsky.social · 28/10/2025
Just going to leave this rather frightening reference about the change in global mammalian biomass from 1860 to now here. 😳🧪 www.nature.com/articles/s41...
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Jakke Neiro @jakkeneiro.bsky.social · 27/10/2025
Been there, done that.
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Jakke Neiro @jakkeneiro.bsky.social · 26/10/2025
Probably sunshine
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Lucas Farnung @lucas.farnunglab.com · 24/10/2025
I love AlphaFold—but please include PAE (Predicted Aligned Error) plots for every “interaction.” Pretty PDBs ≠ proof. If the PAE doesn’t show an interface, it ain’t one. Show the plots. Structural biology's reputation is on the line.
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The Harvard Crimson @theharvardcrimson.bsky.social · 21/10/2025
The Faculty of Arts and Sciences slashed the number of Ph.D. student admissions slots for the Science division by more than 75 percent and for the Arts & Humanities division by about 60 percent for the next two years. William C. Mao and Veronica H. Paulus report. www.thecrimson.com/article/2025...
thecrimson.com
Harvard FAS Cuts Ph.D. Seats By More Than Half Across Next Two Admissions Cycles | News | The Harvard Crimson
The Faculty of Arts and Sciences slashed the number of Ph.D. student admissions slots for the Science division by more than 75 percent and for the Arts & Humanities division by about 60 percent for…
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Olli Bäckström @ollibackstrom.bsky.social · 13/10/2025
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Ben Sheldon @sheldonbirds.bsky.social · 10/10/2025
Honouring the life of Sir John Gurdon, who died earlier this week: awarded the Nobel Laureate in Physiology or Medicine for seminal work carried out in Oxford Zoology (now @biology.ox.ac.uk) showing that mature cells could be reprogrammed to become pluripotent. www.nobelprize.org/prizes/medic...
nobelprize.org
Nobel Prize in Physiology or Medicine 2012
The Nobel Prize in Physiology or Medicine 2012 was awarded jointly to Sir John B. Gurdon and Shinya Yamanaka "for the discovery that mature cells can be reprogrammed to become pluripotent"
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Jakke Neiro @jakkeneiro.bsky.social · 07/10/2025
John Gurdonin muistoa kunnioittaen - kävi myös Suomessa aikoinaan saamassa Yrjö Reenpään mitalin vuonna 1979.
John Gurdon ja Lauri Saxén vuonna 1979.
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Edda Schulz @eddaschulz.bsky.social · 06/10/2025
⚠️ Paper alert: Using a novel CRISPR screening approach, we mapped the entire regulatory network controlling Xist—key for X-chromosome inactivation. 👉 We discover how sex and development signals are decoded at a single gene locus. www.nature.com/articles/s41... 👇 Bluetorial
nature.com
Reporter CRISPR screens decipher cis-regulatory and trans-regulatory principles at the Xist locus - Nature Structural & Molecular Biology
Here Schwämmle et al. develop CRISPR reporter screens to map transcription-factor-regulatory element interactions at the Xist locus, revealing a two-step mechanism integrating developmental and X-dosage signals to initiate X-chromosome inactivation.
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Bart Deplancke @bartdeplancke.bsky.social · 06/10/2025
🧵1/ Excited to share our new paper introducing a new #singlecell assay: scTF-seq, a high-throughput single-cell approach to explore how transcription factor (TF) dose shapes cell identity and reprogramming outcomes. 🔗 www.nature.com/articles/s41... Big congrats to the entire team @EPFL & @SIAT_China
nature.com
Dissecting the impact of transcription factor dose on cell reprogramming heterogeneity using scTF-seq - Nature Genetics
This study introduces single-cell transcription factor (TF) sequencing, a single-cell barcoded and doxycycline-inducible TF overexpression approach that reveals dose-sensitive functional classes of TFs and cellular heterogeneity by mapping TF dose-dependent transcriptomic changes during the reprogramming of mouse embryonic multipotent stromal cells.
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Barriga Lab @eliasbarrigalab.bsky.social · 02/10/2025
New Review! #devbiol #bioelectricity #CellBiology #tissueregeneration In our new @annualreviews.bsky.social piece, we explore how bioelectricity is generated, sensed & translated into responses that sculpt tissues, guide growth & enable tissue regeneration. www.annualreviews.org/content/jour...
annualreviews.org
Bioelectricity in Morphogenesis
Bioelectricity is likely as old as life itself. From the moment the first proto-cell was enclosed in a lipid bilayer, a membrane potential arose. Thus, one can expect that bioelectrical activities inf...
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Greg Priest @gregpriest.bsky.social · 26/09/2025
Rachel Carson’s Silent Spring was published OTD in 1962. “[W]e have now acquired a fateful power to alter and destroy nature. But man is a part of nature, and his war against nature is inevitably a war against himself.” 🌱🐋 # HistSTM 🧪🌎 #philsci #philsky #WomeninSTEM
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Jakke Neiro @jakkeneiro.bsky.social · 26/09/2025
The salamander takes it all The loser's standing small Beside the victory That's her destiny
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Jakke Neiro @jakkeneiro.bsky.social · 25/09/2025
Tvärminne. The forsaken place where I have spent almost a fortnight dissecting amphipods and their eyes in darkness.
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Arnau Sebé-Pedrós @arnausebe.bsky.social · 24/09/2025
Happy to share the Biodiversity Cell Atlas white paper, out today in @nature.com. We look at the possibilities, challenges, and potential impacts of molecularly mapping cells across the tree of life. www.nature.com/articles/s41...
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Matthew Freeman @mjafreeman.bsky.social · 22/09/2025
Fab thread about one of the (many) things one walks past in Oxford without much thought...
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Knut and Alice Wallenberg Foundation @kawresearch.bsky.social · 01/09/2025
The Iberian ribbed newt has the ability to heal its own heart after an injury. The secret might lie in a specific protein also found in humans. Elif Eroglu @ki.se studies salamanders to discover new ways of regenerating our heart cells after a #heartattack. #research #medicine tinyurl.com/mssmcmc2
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Jakke Neiro @jakkeneiro.bsky.social · 15/09/2025
Do apply, especially for the position in Molecular Cell Biology!
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Max Telford @maxjtelford.bsky.social · 15/09/2025
My review of the evidence (morphological, embryological and molecular) for the deuterostomes clade is now available. www.annualreviews.org/content/jour...
Figure showing sagittal sections of a cephalochordate and a hemichordate highlighting potentially homologous structures
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Jakke Neiro @jakkeneiro.bsky.social · 08/09/2025
Slay
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