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Genome Biology and Evolution

@genomebiolevol.bsky.social
4.8K followers 60 following 635 posts

GBE publishes leading original research at the interface between evolutionary biology and genomics. 🔗 academic.oup.com/gbe 🏠 @official-smbe.bsky.social 🤝 @molbioevol.bsky.social #genome #evolution #science #biology #societyjournal

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Reposted by Genome Biology and Evolution
Wen-Cong Huang @wentsunghwang.bsky.social · 19h
Excited to join such a wonderful team! I look forward to strengthening my scientific communication skills and making meaningful contributions to the society’s journals @molbioevol.bsky.social @genomebiolevol.bsky.social !
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Reposted by Genome Biology and Evolution
Róisín Long @roisinlong.bsky.social · 20h
Delighted to be part of this brilliant team and excited to build my SciComm skills writing Highlights for MBE and GBE 🧬🥳
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Reposted by Genome Biology and Evolution
Fabricio Almeida-Silva @almeidasilvaf.bsky.social · 20h
Thrilled to join this fantastic team of talented people and contribute to my favorite society-owned journals. #PublishingWithPurpose
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Genome Biology and Evolution @genomebiolevol.bsky.social · 09/10/2026
@csengepetak.bsky.social @jcbnunez.bsky.social et al. provide the first evidence for regions of low recombination in the purple sea urchin genome, several of which display genomic signatures of structural variants. 🔗 academic.oup.com/gbe/article/... #societyjournal #genome #evolution
academic.oup.com
Signals of Natural Selection across Regions of Low Recombination in Wild Populations of the Purple Sea Urchin, Strongylocentrotus purpuratus
Abstract. Structural variants (SVs) are increasingly recognized as important components of genetic architecture. Yet our understanding of the evolutionary
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Genome Biology and Evolution @genomebiolevol.bsky.social · 09/10/2026
Tian & Meyer report alternatively spliced genes with functions related to microtubule organization and neural development, and several genes showing isoform usage strongly associated with behavioral laterality. 🔗 academic.oup.com/gbe/article/... 🖌️ Weiwei Li #societyjournal #genome #evolution
academic.oup.com
Lateralized Gene Splicing in the Brain is Associated With Lateralized Feeding Behavior in an Asymmetrical Scale-eating Cichlid Fish
Abstract. Lateralized behavior (“handedness”) is a trait observed across all vertebrates, including humans. As an adaptive trait involved in both intraspec
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Reposted by Genome Biology and Evolution
DBSB_Juntendo / Susaki-lab @susaki-lab.bsky.social · 08/10/2026
Thank you for introducing our hydra study!
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Genome Biology and Evolution @genomebiolevol.bsky.social · 07/10/2026
Nojiri, @susaki-lab.bsky.social et al. compared the genomes of the immortal Hydra vulgaris and the aging Hydra oligactis. Results suggest that extended lifespan may reflect differences in how core biological processes are organized. 🔗 academic.oup.com/gbe/article/... #societyjournal #genome
GBE | Comparative Genomics Reveals Signatures of Distinct Metabolic Strategies and Gene Loss Associated With Hydra Immortality 

An image of Hydra vulgaris strain AEP.JNIG overlaid with the distribution of aging-related genes across the metazoan phylogeny. Yellow dots represent H. oligactis-specific aging-related genes, while the blue dots represent those specific to H. vulgaris.
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Genome Biology and Evolution @genomebiolevol.bsky.social · 06/10/2026
Yerka et al. assembled the first Johnsongrass genome, revealing an evolutionary history of genome instability, including the loss of distinct parental subgenomes. 🔗 academic.oup.com/gbe/article/... #societyjournal
academic.oup.com
A High-Quality Genome Assembly of Johnsongrass Illuminates Relationships Between Polyploidization, Crop-Wild Hybridization, and Reproductive Biology
Abstract. Johnsongrass [Sorghum halepense (L.) Pers.] is an allopolyploid, rhizomatous, perennial grass species and one of the most troublesome weeds in gl
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Genome Biology and Evolution @genomebiolevol.bsky.social · 06/10/2026
This article is the focus of our October Highlight and leads our newest Virtual Collection on the Evolution of Sociality. E Pluribus Unum: GBE Virtual Collection on the Evolution of Sociality 🔗 academic.oup.com/gbe/article/...
academic.oup.com
E Pluribus Unum: GBE Virtual Collection on the Evolution of Sociality
Evolution is sometimes construed as a “selfish” process, as selection favors individual reproductive success. However, benefiting your kin can also enhance
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Genome Biology and Evolution @genomebiolevol.bsky.social · 06/10/2026
Sociality has evolved repeatedly across the tree of life. @meganbarkdull.bsky.social & @corriemoreau.bsky.social review how insect sociality both arises from and influences genome evolution. 🔗 academic.oup.com/gbe/article/... 📷 Philipp Hoenle #societyjournal
GBE | Genome Evolution in Social Insects 

Tetramorium fulviceps. Photo: Philipp Hoenle
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Genome Biology and Evolution @genomebiolevol.bsky.social · 05/10/2026
We love this Review! Thank you, Megan and Corrie, for preparing this and publishing it in GBE!
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Reposted by Genome Biology and Evolution
Megan Barkdull @meganbarkdull.bsky.social · 05/10/2026
I’m really happy to share that my invited review on social insect genome evolution, co-authored with @corriemoreau.bsky.social, is out now in @genomebiolevol.bsky.social 🐝🐜 This is the paper I wish I’d had when studying for quals in grad school, and was a ton of fun to write.
Greyscale illustrations of eight social taxa: the wasp Parischnogaster nigricans; the bee Ceratina calcarata; the thrips Kladothrips; the aphid Pseudoregma bambucicola; the bee Austroplebeia cincta; the ambrosia beetle Austroplatypus incompertus; and the ants and termites.
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Megan Barkdull @meganbarkdull.bsky.social · 05/10/2026
Thanks to @genomebiolevol.bsky.social for highlighting our piece by featuring it on the October cover, and huge thanks to Phil Hoenle (@myrmecophip on iNat) for the gorgeous image that we chose.
The cover of the October 2026 issue is Genome Biology and Evolution. On a dark blue background it features an image of Pristomyrmex inermis ants on a piece of wood. Image by Phil Hoenle.
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Genome Biology and Evolution @genomebiolevol.bsky.social · 02/10/2026
The October 2026 issue of GBE is now live - new articles, methods, and genome reports will be published throughout the month, so visit our website regularly. 🔗 academic.oup.com/gbe/issue/18... #societyjournal #genome #evolution
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Genome Biology and Evolution @genomebiolevol.bsky.social · 01/10/2026
The southern corn rootworm is a leaf beetle native to N. America that infests >50 crops. Coates et al. generated a chromosome-level reference assembly for a male, including the first assembled supernumerary B chromosome for a rootworm. 🔗 academic.oup.com/gbe/article/... #societyjournal #genome
academic.oup.com
A Chromosome-scale Assembly for the Genome of Southern Corn Rootworm, Diabrotica Undecimpunctata
Abstract. Diabrotica undecimpunctata ssp. howardi, the southern corn rootworm or eastern 12-spotted cucumber beetle, is a generalist insect herbivore that
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Genome Biology and Evolution @genomebiolevol.bsky.social · 01/10/2026
@michid73.bsky.social et al. show that Norwegian kveik forms a distinct and early branch among European brewing yeasts, originating from ancestral populations 4,000 to 8,000 years ago. 🔗 academic.oup.com/gbe/article/... #societyjournal #genome #evolution
academic.oup.com
Genomic Evidence of Early-Diverging Domesticated Lineages in Norwegian Farmhouse Yeast
Abstract. The use of Saccharomyces cerevisiae to ferment alcoholic beverages is an ancient tradition, with genetic evidence indicating origins in Neolithic
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Reposted by Genome Biology and Evolution
Michael Dondrup @michid73.bsky.social · 01/09/2026
Farmhouse brewers in western Norway have kept a living yeast #kveik in the house for centuries. New paper: Kveik is an early-branching lineage found nowhere else; reported Asian admixture is likely a statistical artefact. @elixirnorway.bsky.social @cbubergen.bsky.social doi.org/10.1093/gbe/...
doi.org
Genomic evidence of early-diverging domesticated lineages in Norwegian farmhouse yeast
Abstract. The use of Saccharomyces cerevisiae to ferment alcoholic beverages is an ancient tradition, with genetic evidence indicating origins in Neolithic
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Genome Biology and Evolution @genomebiolevol.bsky.social · 01/10/2026
Diepeveen, Bellés & @mikkelschierup.bsky.social analysed T2T primate genomes to show that several X chr. gene families evolve under strong positive selection, whereas Y chr. families predominantly show purifying selection. 🔗 academic.oup.com/gbe/article/... #societyjournal #genome #evolution
academic.oup.com
Pervasive Positive Selection on X-linked Ampliconic Genes in Primates
Abstract. Mammalian sex chromosomes harbor ampliconic gene families, which are multicopy genes with ≥97% sequence identity, predominantly expressed in test
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Reposted by Genome Biology and Evolution
Ellen Leffler @ellenleffler.bsky.social · 30/09/2026
Led by @helenahopson.bsky.social, with ERC doyen @nclark.bsky.social and labwork in collab with @sigalalab.bsky.social, we are happy to release an Evolutionary Rate Covariation (ERC) resource for Plasmodium, published in @genomebiolevol.bsky.social. academic.oup.com/gbe/article/...
academic.oup.com
Evolutionary Rate Covariation Across Malaria Parasite Species Enables Inference of Protein Interactions
Abstract. Despite publication of the Plasmodium falciparum reference genome over 20 years ago, one-third of its genes remain functionally unannotated, and
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Genome Biology and Evolution @genomebiolevol.bsky.social · 28/09/2026
Laizé, @joao-pedro-marques.bsky.social @gubrins.bsky.social et al. tested whether nuclear oxidative phosphorylation genes preferentially co-introgress with mitochondrial DNA, allowing for the mitigation of incompatibilities. 🔗 academic.oup.com/gbe/article/... #societyjournal #genome #evolution
academic.oup.com
Weak but Repeated Patterns of Co-Introgression of Nuclear OXPHOS Genes and Mitochondrial DNA in Iberian Wall Lizards
Abstract. In this study, we took advantage of the previously reported instances of mitochondrial DNA (mtDNA) capture in the Podarcis Iberian group, a speci
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Genome Biology and Evolution @genomebiolevol.bsky.social · 28/09/2026
Echeverry-Pérez et al. show that tick endosymbionts form a sister group to opportunistic lineages, consistent with repeated host shifts during their evolutionary history. 🔗 academic.oup.com/gbe/article/... #societyjournal #genome #evolution
academic.oup.com
Genomic Evolution of Francisella: Metabolic Innovation, Endosymbiotic Transitions to Ticks, and Biogeographic History
Abstract. Ticks (Ixodida) are the second most important vectors of infectious diseases in vertebrates, after mosquitoes. Beyond vector roles, they maintain
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Genome Biology and Evolution @genomebiolevol.bsky.social · 25/09/2026
Esdras Tuyishimire⁠, Molly K Burke & Elizabeth G King develop a theoretical model defining the conditions under which recurrent, strong oscillations in allele frequencies are predicted to occur because of fluctuating selection. 🔗 academic.oup.com/gbe/article/... #societyjournal #genome #evolution
academic.oup.com
Dissecting Fluctuating Selection: A Unified Population and Quantitative Genetics Framework
Abstract. One of the longstanding debates in evolutionary biology is the effect of fluctuating selection on genetic changes in populations. However, the ex
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Genome Biology and Evolution @genomebiolevol.bsky.social · 22/09/2026
@alexrepgh.bsky.social et al. identify SNP associated with genes involved in physiological processes such as ion regulation in gills and fatty acid metabolism in the brain during freshwater adaptation by oceanic sticklebacks. 🔗 academic.oup.com/gbe/article/... #societyjournal #genome #evolution
academic.oup.com
Genomic Signatures of Selection Are Enriched in Differentially Expressed Genes in Sticklebacks Adapting to Contrasting Environments
Abstract. Whole genome scans have identified numerous adaptive alleles in many species; however, linking these alleles to specific phenotypes remains a maj
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Molecular Microbiology @molmicrounihoh.bsky.social · 07/09/2026
super interesting paper: 👇 Evolutionary Maintenance of Amino Acid Prototrophy in Escherichia coli! academic.oup.com/gbe/article/...
academic.oup.com
The Evolutionary Maintenance of Amino Acid Prototrophy in Escherichia coli
Abstract. Escherichia coli is a prototroph and can synthesize all twenty proteinogenic amino acids when required to grow in minimal medium. There are appro
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Genome Biology and Evolution @genomebiolevol.bsky.social · 22/09/2026
Congratulations Joris and rest of the team!
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Genome Biology and Evolution @genomebiolevol.bsky.social · 21/09/2026
Authors on Bluesky: @sergiohidalgo.bsky.social @joanna-chiu.bsky.social
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Genome Biology and Evolution @genomebiolevol.bsky.social · 21/09/2026
Tabuloc et al. show that the fruit pest Drosophila suzukii, resistant to multiple insecticides, exhibits aberrant splicing in many classes of genes, including general stress response and insecticide resistance genes. 🔗 academic.oup.com/gbe/article/... #societyjournal #genome #evolution #pest
academic.oup.com
Changes in Alternative Splicing are Associated with Insecticide Response and Resistance
Abstract. Alternative splicing (AS) promotes phenotypic plasticity to adverse conditions by altering the transcripts of genes directly involved in adaptati
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Reposted by Genome Biology and Evolution
Joris Bertrand @jorisbertrand.bsky.social · 17/09/2026
Glad to see this work published in @genomebiolevol.bsky.social 😉
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Genome Biology and Evolution @genomebiolevol.bsky.social · 21/09/2026
Congratulations Alexander!👏
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Reposted by Genome Biology and Evolution
Alexander Kwakye @alexrepgh.bsky.social · 17/09/2026
Part of my PhD work is now published in @genomebiolevol.bsky.social academic.oup.com/gbe/article/...
academic.oup.com
Genomic Signatures of Selection Are Enriched in Differentially Expressed Genes in Sticklebacks Adapting to Contrasting Environments
Abstract. Whole genome scans have identified numerous adaptive alleles in many species; however, linking these alleles to specific phenotypes remains a maj
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Reposted by Genome Biology and Evolution
Zebrafish Rock! 🎃 @zebrafishrock.bsky.social · 18/09/2026
ICYMI... New #cichlid work from @astridboehne.bsky.social & team 🐠
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Genome Biology and Evolution @genomebiolevol.bsky.social · 18/09/2026
Authors on Bluesky @dgkontopoulos.io @bernhardbein.bsky.social @daniellelevesque.bsky.social @hillermich.bsky.social
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Genome Biology and Evolution @genomebiolevol.bsky.social · 18/09/2026
Kontopoulos et al. screened 190 placental mammal genomes to examine associations between loss, positive selection, and evolutionary rate shifts in protein-coding genes and evolutionary shifts in torpor use 🔗 academic.oup.com/gbe/article/... 📷 Danielle L Levesque #societyjournal #evolution
GBE | Lack of Evidence for Gene-Level Convergence Linked to Evolutionary Shifts in Torpor Among Placental Mammals

Photo: An eastern chipmunk (Tamias striatus) during torpor. Photo credit: Danielle L. Levesque (coauthor of this study).

Inset: Phylogeny of 190 placental mammals analyzed in this study. Circles represent torpor use for both extant species and ancestral nodes with high-confidence reconstructions. Tree branches are annotated with patterns of positive selection and losses in the GPR35 protein-coding gene. This gene is among those most strongly associated with torpor evolution, yet explains less than 10% of variance in torpor use across species.
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Genome Biology and Evolution @genomebiolevol.bsky.social · 18/09/2026
Smith, Musilova & @astridboehne@bsky.social find new sex chromosomes in a group of cichlids from Lake Tanganyika and show that while these involve the same chromosome pairs, the sex chromosomes evolved independently. 🔗 academic.oup.com/gbe/article/... #societyjournal #genome #evolution
GBE | Same Sex Chromosomes With Independent Origins in Haplochromine Cichlids

Known sex chromosomes, and sex-linked regions thereof, of African haplochromine cichlid fishes, relative to the genome of Astatotilapia calliptera (bottom-left illustration). While there is great diversity of sex chromosomes and regions of sex linkage across this clade, LG5 and LG7 frequently reappear as sex-linked, particularly within the Lake Tanganyika-specific tribe of haplochromines, the Tropheini. Sex-linked regions on LG5 and LG7 are shown, highlighted in blue for XY systems and orange for ZW systems. In species in which sex-linkage is not known, this is marked with ‘?’. Other known sex chromosomes are listed on the right. Species included in this study are marked in bold. Proposed origins of different sex determination systems or genes are shown with yellow arrows on tree branches, while losses are shown with black arrows.
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Genome Biology and Evolution @genomebiolevol.bsky.social · 17/09/2026
Authors on Bluesky: @lvandenabeele.bsky.social @anaisgibert.bsky.social @jorisbertrand.bsky.social @pascaline27.bsky.social
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Genome Biology and Evolution @genomebiolevol.bsky.social · 17/09/2026
Vandenabeele et al. show that the numerous phylogenetic incongruences among gene tree topologies in orchids result from pervasive ILS, over which stand out several well-supported, ancient and potentially adaptive gene flow events between lineages. 🔗 academic.oup.com/gbe/article/... #societyjournal
academic.oup.com
Phylotranscriptomics Allows Distinguishing Major Gene Flow Events from Incomplete Lineage Sorting in Rapidly Diversifying Mimetic Orchids (Genus Ophrys)
Abstract. Ophrys orchids (or bee orchids) provide an outstanding example of a plant adaptive radiation. Over the last 5 million years, this genus has diver
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Genome Biology and Evolution @genomebiolevol.bsky.social · 17/09/2026
Authors on Bluesky: @annecmg.bsky.social @vakirlis.bsky.social @holmrenser.bsky.social
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Genome Biology and Evolution @genomebiolevol.bsky.social · 17/09/2026
Chen et al. show that a substantial fraction of predicted orphan genes lacks expression support, and they exhibit distinct sequence and evolutionary signatures from expressed orphans. 🔗 academic.oup.com/gbe/article/... #societyjournal #genome #evolution
academic.oup.com
Identification and Classification of Expressed Orphan Genes, Spurious Orphan Genes, and Conserved Genes in the Human Gut Microbiome
Abstract. Orphan genes (OGs)—genes lacking detectable homologs outside a species—are widespread in microbial genomes and are thought to contribute to their
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Genome Biology and Evolution @genomebiolevol.bsky.social · 16/09/2026
Amoroso et al. scanned whole-genome samples of round-tailed horned lizards and modeled their evolutionary history, identifying regions where genetic content differed significantly between populations of the species. 🔗 academic.oup.com/gbe/article/... #societyjournal #genome #evolution
academic.oup.com
Understanding Genomic Landscapes of Differentiation in Round-Tailed Horned Lizards (Phrynosoma modestum)
Abstract. Population divergence is promoted by divergent selection and inhibited by gene flow, but the mechanisms of and relationship between these two pro
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Reposted by Genome Biology and Evolution
Dimitris Kontopoulos @dgkontopoulos.io · 11/09/2026
Thrilled to share our new Genome Biology and Evolution paper! Here, we study the associations between evolutionary shifts in #torpor across placental mammals and changes in individual protein-coding #genes. 1/7 doi.org/10.1093/gbe/evag216
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Andrea Schreier @andrea-schreier.bsky.social · 15/09/2026
Love this post from GBE about Carlos’s WEBL genome paper!
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Reposted by Genome Biology and Evolution
carlosesperanza.bsky.social @carlosesperanza.bsky.social · 14/09/2026
@peimeng.bsky.social
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Genome Biology and Evolution @genomebiolevol.bsky.social · 14/09/2026
The western bluebird is a cavity-nesting thrush that experienced historical population declines. @carlosesperanza.bsky.social @andrea-schreier.bsky.social et al. present the first high-quality reference genome for the species 🔗 academic.oup.com/gbe/article/... 📷 Peimeng Xu #societyjournal #genome
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Genome Biology and Evolution @genomebiolevol.bsky.social · 11/09/2026
Pau, @syngnathid.bsky.social et al. find that chromosome-wide dosage compensation can be maintained by global regulatory mechanisms that persist through sex chromosome turnover, even when gene-by-gene constraints are weak. 🔗 academic.oup.com/gbe/article/... #societyjournal #genome #evolution
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Genome Biology and Evolution @genomebiolevol.bsky.social · 11/09/2026
Her current focus is on rice. In her new GBE article, she searched the genomes of wild Oryza for footprints of ancient introgression between lineages now separated by continents. She is now interested in the genomic changes that arose during domestication and improvement of rice and other crops
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Genome Biology and Evolution @genomebiolevol.bsky.social · 11/09/2026
Kanako is an associate professor at Hokkaido University. She earned her PhD from Kyoto University, where she studied gene duplication in animals. She has long been interested in reading the past from present-day genomic and other molecular information using phylogenetic and comparative approaches
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Genome Biology and Evolution @genomebiolevol.bsky.social · 11/09/2026
This month's GBE Author Spotlight focuses on Kanako Koyanagi of Hokkaido University, first author of this month's article on the evolution of wild rice species. #societyjournal
GBE Author Spotlight

Kanako O. Koyanagi
Hokkaido University
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Genome Biology and Evolution @genomebiolevol.bsky.social · 10/09/2026
@guyleonard.eurosky.social @brockhurstlab.bsky.social et al. report a T2T genome for Micractinium conductrix, an endosymbiont of Paramecium bursaria, publishing one of the most complete Chlorellaceae algal genome assemblies to date 🔗 academic.oup.com/gbe/article/... #societyjournal #genome #algae
academic.oup.com
De Novo Genome Sequence Assembly of the Algal Endosymbiont Micractinium conductrix Derived From Its Host Paramecium bursaria 186b
Abstract. Endosymbiosis is a major driver of evolutionary innovation and underpins the function of diverse ecosystems. The origins and evolution of endosym
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Genome Biology and Evolution @genomebiolevol.bsky.social · 10/09/2026
The first author of the paper, Kanako Koyanagi, answered some of our questions about the paper: 🔗 smbe.short.gy/gbe2026rice
smbe.short.gy
Kanako Koyanagi on the evolution of wild rice | Notion
The evolutionary history of rice has traditionally been described as featuring a branching pattern. What led you to search for evidence of a more complex history?
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Genome Biology and Evolution @genomebiolevol.bsky.social · 10/09/2026
The September GBE Highlight features the article by Koyanagi, Kotoku & Kishima on the role of genetic exchange in the evolution of wild rice. Highlight: Ghosts of Long-Lost Connections in the Genomes of Wild Rice 🔗 academic.oup.com/gbe/article/... #societyjournal
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