Joaquin Nunez @jcbnunez.bsky.social · 22/07/2026We're turning the official semester Nunez lab photo into a tradition, and I'm absolutely here for it. Every semester it's a chance to see all the wonderful people doing science in my lab, both old and new. Feeling grateful for this amazing group and excited for what we'll accomplish together. 060
Reposted by Joaquin NunezJan Broder Engler @jbengler.de · 25/06/2026This is how you can compare groups in #tidyplots 🦊 #rstats #dataviz #phd 0152
Joaquin Nunez @jcbnunez.bsky.social · 19/06/2026Sea star wasting disease has killed billions of sea stars along North America’s Pacific Coast since 2013. Our latest work helped identify a key bacterial culprit, Vibrio pectenicida! Press Release: www.uvm.edu/uvmnews/news... Paper: royalsocietypublishing.org/rspb/article...uvm.eduEarly Warning Signs: UVM Scientists Offer New Clues in...| The University of Vermont 061
Joaquin Nunez @jcbnunez.bsky.social · 19/06/2026What a tiny coastal snail can tell us about a changing climate? See our latest paper! royalsocietypublishing.org/rspb/article... And the UVM Q&A: www.uvm.edu/cas/news/wha...royalsocietypublishing.orgGeographic divergence in population genomics and shell morphology reveal history of glacial refugia in a coastal dogwhelkAbstract. Studying contemporaneous spatial patterns of genomic diversity can yield important insights into the evolutionary processes that structure popula 051
Joaquin Nunez @jcbnunez.bsky.social · 19/06/2026End of an era in the lab! Luke Proud was one of my first undergrads, and over 3 years we worked on multiple projects. He completed his thesis with Molly Stanley and me, then spent a year as a bioinformatician collaborating with @droseu.bsky.social. Proud to share he is off to a PhD at @upenn.edu! 040
Reposted by Joaquin NunezSusana Wadgymar🌿🔬 @smwadgymar.bsky.social · 04/06/2026HUGE kudos to SSE leadership for spearheading collective action against OMB's proposed rule. 👏🏼👏🏼👏🏼🧪 Societies matter!! Support them with your engagement, conference attendance, and choice of journals. SSE members: please consider signing these letters! SSE non-members: please consider joining ☺️ 02315
Reposted by Joaquin NunezDrosEU @droseu.bsky.social · 01/06/2026Save the date! The 17th DrosEU workshop will be held in České Budějovice on the 24th to 26th May 2027. Thanks to @janhreck.bsky.social for hosting us! #Drosophila #genomics 01211
Reposted by Joaquin NunezDrosEU @droseu.bsky.social · 15/04/2026Day 1 of the #Drosophila #Suzukii Meeting kicks off today in #Montpellier, France 🇫🇷 (15–17 April 2026)! #DrosEU2026 182
Reposted by Joaquin NunezDrosEU @droseu.bsky.social · 14/04/2026🪰🧬 Day 2 at #DrosEU2026! Another inspiring day at #Genopolys in Montpellier, France 🇫🇷 Great talks and lively discussions on #Drosophila cutting-edge #populationgenomics Looking forward to following up tomorrow #DrosophilaSuzukii Meeting Conference 1113
Reposted by Joaquin NunezDrosEU @droseu.bsky.social · 14/04/2026🪰🧬 What a fantastic start! Yesterday kicked off #DrosEU2026 at #Genopolys in Montpellier, France 🇫🇷 Exciting discussions on #Drosophila research, #genomics, #evolution, and #CitizenScience. 1145
Reposted by Joaquin NunezDr. K. Lotterhos @drk-lo.bsky.social · 24/03/2026Seasonal job available in Burlington, VT in invasive pest ecologcal genomics! The successful candidate will work with myself and @jcbnunez.bsky.social on seasonal adaptation in Drosophila susukii. #popGen #evolution #genomics 🧪🧬🖥️ Apply by April 7: northeastern.wd1.myworkdayjobs.com/careers/job/...northeastern.wd1.myworkdayjobs.comResearch AssistantAbout the Opportunity JOB SUMMARY The Lotterhos Lab at Northeastern University, in collaboration with the Nunez lab and the Institute for Agroecology at the University of Vermont (UVM), invites applic... 11316
Reposted by Joaquin NunezUniversity of Vermont @uvmvermont.bsky.social · 09/01/2026New UVM research published in PNAS shows that life stages evolve differently in response to changes in the environment, challenging a long-standing belief that genes guiding embryonic development don’t readily evolve in response to environmental pressures. For more: go.uvm.edu/xw7v0go.uvm.eduNew Study Reveals Climate Adaptation Begins Early | College of Arts and Sciences | The University of VermontNew Study Reveals Climate Adaptation Begins Early Breadcrumb Home College of Arts and Sciences CAS News New Study Reveals Climate Adaptation Begins Early Explore show menu hide menu College of Arts and Sciences Home About Overview College Board of Advis... 051
Joaquin Nunez @jcbnunez.bsky.social · 08/01/2026New paper out in the Proceedings of the National Academy of Sciences. We identify regulatory variants shaping embryonic heat tolerance in Drosophila, linking lab selection to clinal and seasonal patterns in wild populations. Link: www.pnas.org/doi/10.1073/...pnas.orgPNASProceedings of the National Academy of Sciences (PNAS), a peer reviewed journal of the National Academy of Sciences (NAS) - an authoritative source of high-impact, original research that broadly spans... 073
Joaquin Nunez @jcbnunez.bsky.social · 15/12/2025We’re hiring a Planetary Health Postdoc at UVM! Join the Lauterbur, Nunez & Pespeni labs in the Department of Biology for an interdisciplinary fellowship exploring evolutionary & ecological infectious disease dynamics. 📅 Start: Flexible (May–Sept 2026) 🔗 Details: www.jcbnunez.org/planetaryhea...lnkd.inLinkedInThis link will take you to a page that’s not on LinkedIn 031
Reposted by Joaquin NunezEuropean Society for Evolutionary Biology @eseb.bsky.social · 24/11/2025NEW DEADLINE - Global Evolutionary Biology Initiative 📣 🌍MARCH 1st 2026🌍 GEBI provides financial, organisational & strategic support to foster growth of local evolutionary biology communities in various parts of the world. eseb.org/prizes-fundi... 052
Reposted by Joaquin NunezJacob Schreiber @jmschreiber91.bsky.social · 20/11/2025My first @umasschan.bsky.social/@impvienna.bsky.social affiliated paper is up! tomtom-lite is a re-implementation of tomtom targeting the ML age of genomics. Fast annotations ("what is this motif?") and simple large-scale discovery of motifs. Check it out! academic.oup.com/bioinformati...academic.oup.comTomtom-lite: accelerating Tomtom enables large-scale and real-time motif similarity scoringAbstractSummary. Pairwise sequence similarity is a core operation in genomic analysis, yet most attention has been given to sequences made up of discrete c 13514
Reposted by Joaquin NunezDrosEU @droseu.bsky.social · 19/10/2025We are in Bluesky and we are happy to share our two last consortium publications: the DrosEU expanded DEST dataset and a Continent-wide study of phenotypic differentiation among European #Drosophila melanogaster populations (1/7) 25035
Reposted by Joaquin NunezNature Ecology & Evolution @natecoevo.nature.com · 18/09/2025Measuring selection and dominance in fitness of the insecticide-resistant Ace alleles in Drosophila melanogaster, the authors show evidence for beneficial reversal of dominance, a mechanism that can stabilize large-effect polymorphisms in nature. 🧪 www.nature.com/articles/s41...nature.comBeneficial reversal of dominance maintains a large-effect resistance polymorphism under fluctuating insecticide selection - Nature Ecology & EvolutionMeasuring selection and dominance in fitness of the insecticide-resistant Ace alleles in Drosophila melanogaster, the authors show evidence for beneficial reversal of dominance, a mechanism that can s... 0124
Reposted by Joaquin NunezAlbert Vilella, PhD. @albertvilella.bsky.social · 14/09/2025Genome assembly is a software+data problem, and since the latest version of hifiasm, the best data is Oxford @nanopore data. github.com/chhylp123/hi...github.comWhich assembly should be chosed `hifiasm HiFi+HiC+ONT->Cphasing Pore-C` or `hifiasm ONT` · Issue #874 · chhylp123/hifiasmHi, I used two assemble strategy, first version is hifiasm with HiFi+HiC+ONT data, then Cphasing scaffold with Pore-C data, second version is hifiasm with ONT data. However, first version genome ha... 1174
Reposted by Joaquin NunezAlbert Vilella, PhD. @albertvilella.bsky.social · 05/09/2025Pretty amazing observation in nature rdcu.be/eEebwrdcu.beOne mother for two species via obligate cross-species cloning in antsNature - In a case of obligate cross-species cloning, female ants of Messor ibericus need to clone males of Messor structor to obtain sperm for producing the worker caste, resulting in males from... 0143
Joaquin Nunez @jcbnunez.bsky.social · 04/09/2025Exciting to see Sara Helms Cahan quoted in Science, offering her perspective on the awesome reproductive strategies of Iberian harvester ants! www.science.org/content/arti...science.orgAnt queen lays eggs that hatch into two speciesBizarre discovery of interspecies cloning “almost impossible to believe,” biologists say 021
Reposted by Joaquin NunezLotus Lofgren @lotuslofgren.bsky.social · 02/09/2025Our department (Berkeley PMB) is hiring an asst. prof. in Plant Resilience to Climate Change! aprecruit.berkeley.edu/JPF05049aprecruit.berkeley.eduAssistant Professor - Plant Resilience to Climate Change - Department of Plant and Microbial BiologyUniversity of California, Berkeley is hiring. Apply now! 113489
Reposted by Joaquin NunezProf Neil Martin @thatneilmartin.bsky.social · 24/08/2025I'm no Cassandra, but I've been exploring this alternative to GS if the Sentient AI Overlords pull the plug on GS. It's this and it is, currently, terrible: openalex.orgopenalex.orgOpenAlex 152
Reposted by Joaquin NunezMolecular Biology and Evolution @molbioevol.bsky.social · 20/08/2025@jcbnunez.bsky.social et al. present an expanded release of the community-generated resource Drosophila Evolution over Space and Time (DEST 2.0), and showcase it by studying the species' demographic history and signatures of adaptation. 🔗 doi.org/10.1093/molbev/msaf132 #evobio #molbio #drosophila 11910
Reposted by Joaquin NunezMolecular Biology and Evolution @molbioevol.bsky.social · 20/08/2025An immense effort with contributions from many authors: @gonzalezlabbcn.bsky.social @geneticament.bsky.social @petrovadmitri.bsky.social @mgda76.bsky.social @rawwiberg.bsky.social @juliabeets.bsky.social @paucarazo.bsky.social ...and many others... ⬇️ Please tag yourself or other authors below 133
Joaquin Nunez @jcbnunez.bsky.social · 19/08/2025doi.org/10.1093/molb... Thrilled to share our new paper in MBE! 🎉 Presenting DEST 2.0: 530 pooled Drosophila populations spanning 12 years across 6 continents. We map genomic footprints of adaptation, from pesticide resistance to seasonal changes. #PopulationGenetics #Drosophila #Genomics #Evolutiondoi.orgFootprints of Worldwide Adaptation in Structured Populations of Drosophila melanogaster Through the Expanded DEST 2.0 Genomic ResourceAbstract. Large-scale genomic resources can place genetic variation into an ecologically informed context. To advance our understanding of the population g 12813
Joaquin Nunez @jcbnunez.bsky.social · 03/07/2025Summer research hits different in Vermont. Lucky to spend the season doing cool science with even cooler people. ☀️✨ 030
Joaquin Nunez @jcbnunez.bsky.social · 12/06/2025🎉 Excited to learn that our paper “A cosmopolitan inversion facilitates seasonal adaptation in overwintering Drosophila” is among the most cited recent papers in GENETICS! ☀️❄️ In(2L)t is a key player in seasonal adaptive tracking in fruit flies. academic.oup.com/genetics/art... #Evolution #Geneticsacademic.oup.comA cosmopolitan inversion facilitates seasonal adaptation in overwintering DrosophilaAbstract. Fluctuations in the strength and direction of natural selection through time are a ubiquitous feature of life on Earth. One evolutionary outcome 020
Joaquin Nunez @jcbnunez.bsky.social · 14/05/2025🚨 There is still time to submit a poster for our upcoming Gordon Research Seminar in Ecological & Evolutionary Genomics: Elucidating the Evolutionary Dynamics of Adaptation in Fluctuating Environments! 🧬 Apply now 👉 www.grc.org/ecological-a... 012
Joaquin Nunez @jcbnunez.bsky.social · 10/05/2025Some happy news to share: today we celebrate the inaugural class of the Nunez Lab at UVM! :) 030
Reposted by Joaquin NunezJason Moore @moorejh.bsky.social · 01/04/2025Unless there is free lunch.... 181
Reposted by Joaquin NunezVincent Ledvina @vincentledvina.bsky.social · 26/03/2025Glorious red aurora occurring now! One of the most pronounced auroral curtains I have ever witnessed. Such a sharp contrast. 1442832
Reposted by Joaquin NunezDan Schrider @samurscicop.bsky.social · 24/03/2025stdpopsim v0.3.0 is out! You can now mix and match your simulations of different demographic histories with published distributions of fitness effects along with gene annotations, and you can even throw in sweeps for good measure. Check out the new manuscript for more info: doi.org/10.1101/2025...doi.orgAccessible, realistic genome simulation with selection using stdpopsimSelection is a fundamental evolutionary force that shapes patterns of genetic variation across species. However, simulations incorporating realistic selection along heterogeneous genomes in complex de... 03722
Reposted by Joaquin NunezHeng Li @lh3lh3.bsky.social · 24/03/2025longcallD is a new variant caller for genomic long reads. It jointly calls phased small and structural variants. Single binary, one command line for the whole process. Comparable accuracy to mainstream callers. Great work by Yan Gao. github.com/yangao07/lon...github.comGitHub - yangao07/longcallD: A local-haplotagging-based small and structural variant callerA local-haplotagging-based small and structural variant caller - yangao07/longcallD 310449
Reposted by Joaquin NunezLandscapehead @landscapehead.com · 19/03/2025Photo by Manu Rodriguez (manurs.es) #landscape #landscapephotography #photography 1079241
Reposted by Joaquin NunezMike Melton @mikemelton.bsky.social · 20/03/2025Crimson-collared Tanager at @tapirvalley.bsky.social #birds #costarica #nature 1692488
Reposted by Joaquin NunezJocelyn Anderson Photography @jocelynanderson.bsky.social · 18/03/2025The bluebird carries the sky on his back. - Henry David Thoreau 📷: Eastern Bluebird 164131731296
Reposted by Joaquin NunezKaryn Murphy 𓇼𓇼 🐙 @staycurious.bsky.social · 17/03/2025Watching barnacles sweep the ocean for food is so mesmerizing. They look like eyelashes opening and closing. I could watch this for hours. #barnacles #intertidal #marinelife 🦑 626075
Reposted by Joaquin NunezRebekah Rogers @evolscientist.bsky.social · 14/03/2025@jcbnunez.bsky.social at UNCC Bioinformatics Seminar. 272
Joaquin Nunez @jcbnunez.bsky.social · 14/03/2025Excited to be at UNCC today to give the Larry Mays Seminar in Bioinformatics! Looking forward to great discussions with the Genomics and Bioinformatics department and connecting with the UNCC community. #Bioinformatics #Genomics #UNCC 030
Joaquin Nunez @jcbnunez.bsky.social · 12/03/2025🚨 Join us at the GRC/GRS in Italy 🚨 --> Ecological & Evolutionary Genomics Conference (2025)! 🌿🧬 📢 Submit your abstract by April 6 for a chance to give a talk! Co-chairs: @evobioclio.bsky.social and @jcbnunez.bsky.social 🔗 Apply here: www.grc.org/ecological-a... #Genomics #Evolution #Ecology #GRCgrc.org2025 Ecological and Evolutionary Genomics (GRS) Seminar GRCThe 2025 Gordon Research Seminar on Ecological and Evolutionary Genomics (GRS) will be held in Lucca (Barga), Lucca Italy. Apply today to reserve your spot. 041
Reposted by Joaquin NunezM. Elise Lauterbur @lauterbur.bsky.social · 03/03/2025Join us in Burlington to Stand up for Science! #StandUpForScience2025 033
Joaquin Nunez @jcbnunez.bsky.social · 28/02/2025Going Beyond the Data: UVM's new course explores how storytelling enhances science communication. The class empowers grad students to convey research through filmmaking. Check out their inspiring short films! www.uvm.edu/cas/news/bey...uvm.eduBeyond the Data | College of Arts and Sciences | The University of Vermont 000
Joaquin Nunez @jcbnunez.bsky.social · 19/02/2025🚨 Exciting event alert! 🚨 Join us at the Ecological & Evolutionary Genomics GRS 2025! 🌍🧬 A must-attend for early-career researchers diving into cutting-edge genomics. Don’t miss out—apply now! 👉 lnkd.in/eZK2C9pD hashtag#Genomics hashtag#Evolution hashtag#GRS2025 032
Reposted by Joaquin NunezM. Elise Lauterbur @lauterbur.bsky.social · 15/02/2025Myself and two awesome colleagues are recruiting a Postdoctoral Fellow in Planetary Health at the University of Vermont, application review begins March 17. We're committed to a supportive mentoring environment, please feel free to reach out with questions! drive.google.com/file/d/1OECG... 189
Reposted by Joaquin NunezCharikleia Karageorgiou (Clio) @evobioclio.bsky.social · 04/02/2025Join us at the Gordon Research Seminar on Ecological and Evolutionary Genomics in Tuscany, co-chaired by @jcbnunez.bsky.social and me. If you’d like to present your research and be considered for a talk, make sure to submit your application before April 6th! www.grc.org/ecological-a... 052
Reposted by Joaquin NunezScience Magazine @science.org · 25/01/2025In a new Science study, researchers present CASTER, a tool that uses arrangements in DNA sequences known as site patterns to infer “species trees,” which are diagrams that depict the evolutionary relationships among species. Learn more:scim.agCASTER: Direct species tree inference from whole-genome alignmentsGenomes contain mosaics of discordant evolutionary histories, challenging the accurate inference of the tree of life. While genome-wide data are routinely used for discordance-aware phylogenomic analyses, due to modeling and scalability limitations, the... 314738
Reposted by Joaquin NunezDarren Obbard @darrenobbard.bsky.social · 24/01/2025I love this! www.nature.com/articles/s41...nature.comPreference for and resistance to a toxic sulfur volatile opens up a unique niche in Drosophila busckii - Nature CommunicationsHow animals adapt to toxic ecological niches is poorly understood. This study shows that Drosophila busckii has evolved a tolerance to DMDS, a potent insecticide, likely due to an insensitivity in its... 151
Reposted by Joaquin NunezDarren Dahly @statsepi.bsky.social · 21/01/2025Taking the opportunity to repost this since people hate it BECAUSE I'M RIGHT. 1110123