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Alexander Taylor

@alextaylor314.bsky.social
65 followers 82 following 9 posts

Postdoc at the Astbury Centre, Leeds, UK | Biophysics and chemical biology | Protein folding, intrinsic disorder, self-assembly, amyloid.

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Reposted by Alexander Taylor
Faculty of Biological Sciences @bioscienceleeds.bsky.social · 06/11/2025
Leeds researchers have secured two major Wellcome Trust Discovery Awards. The awards bring £3.4 million to support research exploring life at the molecular level and to deepen our understanding of disease. 🔗Full story: bit.ly/4oW3D99 @astburycentre.bsky.social @universityofleeds.bsky.social
bit.ly
Two more Wellcome Discovery Awards reinforce Leeds as leader in biological research
Some of Leeds’ top biological researchers have received two new Wellcome Discovery Awards, confirming the university’s status as a centre of excellence in biological research.
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Reposted by Alexander Taylor
Paul Robustelli @paulrobustelli.bsky.social · 10/10/2025
Our work developing a maximum entropy reweighting method to refine all-atom ensembles of IDPs with extensive NMR and SAXS datasets is now out in @natcomms.nature.com: rdcu.be/eKlK7 Led by @dartmouthchem.bsky.social graduate student Kaushilk Borthakur in collaboration with @bonomimax.bsky.social
rdcu.be
Determining accurate conformational ensembles of intrinsically disordered proteins at atomic resolution
Nature Communications - This study demonstrates how to combine molecular dynamics computer simulations with experimental biophysical data to determine accurate atomic-resolution ensembles of...
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Reposted by Alexander Taylor
Nature @nature.com · 01/10/2025
The obsession with economic output as a measure of human development puts sustainability on the back burner go.nature.com/4pNC96G
go.nature.com
End GDP mania: how the world should really measure prosperity
The obsession with economic output as a measure of human development puts sustainability on the back burner. Researchers can now help to devise better indicators.
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Reposted by Alexander Taylor
Paul Robustelli @paulrobustelli.bsky.social · 27/09/2025
Excited to share a new preprint: "Monomer binding modes of small molecules that modulate the kinetics of hIAPP amyloid formation" by graduate student Michelle Garcia together with post-doc Korey Reid. Paper: www.biorxiv.org/content/10.1... Code + Ensembles: github.com/paulrobustel...
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Nature @nature.com · 25/09/2025
A one-time gene therapy can markedly slow the progression of Huntington’s disease, potentially paving the way for the first ever treatment to alter the course of this rare, inherited brain disorder. go.nature.com/4nu6YMs
go.nature.com
Huntington’s disease treated for first time using gene therapy
Preliminary results from a small trial offer the clearest evidence yet that the brain disease’s progression can be slowed.
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Reposted by Alexander Taylor
Emily Byrd @emilyjbyrd.bsky.social · 25/09/2025
🚨 Excited to share our paper in JACS! 📈 We show that Zn²⁺ ions modulate the conformational ensemble of N-acetylated α-synuclein which directly influences its amyloidogenic behaviour. 🧩 Our approach combines ion mobility mass spec with ThT fluorescence, NMR and MD. 👉🏼 pubs.acs.org/doi/10.1021/...
pubs.acs.org
Zn2+ Binding Shifts the Conformational Ensemble of α-Synuclein Monomers toward Accelerated Amyloid Formation
Alpha-synuclein (αS) is an intrinsically disordered protein (IDP) that can self-assemble into amyloid fibrils, undergoing a transition from disordered monomers to ordered β-sheet-rich fibrils. The amy...
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Reposted by Alexander Taylor
RCSB Protein Data Bank @rcsbpdb.bsky.social · 19/09/2025
September 21 is #WorldAlzheimersDay Alzheimer's disease and prion diseases are linked to unnatural aggregation of proteins into amyloid fibrils.
pdb101.rcsb.org
PDB101: Molecule of the Month: Amyloids
Alzheimer's disease and prion diseases are linked to unnatural aggregation of proteins into amyloid fibrils.
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Reposted by Alexander Taylor
RadfordLab @radford-lab.bsky.social · 08/09/2025
Our review on CPEB and memory published today- thanks to all authors. Enjoy the read
Front cover
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Reposted by Alexander Taylor
Nature Chemical Biology @natchembio.nature.com · 26/08/2025
Tau’s microtubule-binding repeat regions interact with amyloid-β (Aβ) to form hetero-assemblies, which can modify Aβ amyloidogenesis and alleviate Aβ-induced cytotoxicity www.nature.com/articles/s41...
nature.com
Interactions with tau’s microtubule-binding repeats modulate amyloid-β aggregation and toxicity - Nature Chemical Biology
The interplay between tau and amyloid-β (Aβ) in the development of Alzheimer’s disease is not fully understood. It has now been shown that tau’s microtubule-binding repeat regions, which contain a com...
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Reposted by Alexander Taylor
RadfordLab @radford-lab.bsky.social · 29/07/2025
Interested in amyloid polymorphs? Our latest paper with PhD student Jack Connor is just out. Have a read and do try out his analysis on your favourite amyloid structures! doi.org/10.1016/j.st...
Image of paper cover
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Reposted by Alexander Taylor
Cecilia Clementi @cecclementi.bsky.social · 18/07/2025
Our development of machine-learned transferable coarse-grained models in now on Nat Chem! doi.org/10.1038/s415... I am so proud of my group for this work! Particularly first authors Nick Charron, Klara Bonneau, Aldo Pasos-Trejo, Andrea Guljas.
doi.org
Navigating protein landscapes with a machine-learned transferable coarse-grained model - Nature Chemistry
The development of a universal protein coarse-grained model has been a long-standing challenge. A coarse-grained model with chemical transferability has now been developed by combining deep-learning m...
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Jerelle Joseph @jerelleaj.bsky.social · 03/07/2025
Huge congratulations to @alinaemelianova.bsky.social Pablo and Daniel on their paper on small-molecule partitioning into condensates now published in JACS Au and selected as ACS Editor’s Choice!!! pubs.acs.org/doi/full/10....
pubs.acs.org
Prediction of Small-Molecule Partitioning into Biomolecular Condensates from Simulation
Predicting small-molecule partitioning into biomolecular condensates is the key to developing drugs that selectively target aberrant condensates. However, the molecular mechanisms underlying small-mol...
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Reposted by Alexander Taylor
Gene Chong @chongg.bsky.social · 23/06/2025
A new paper from the Institute for Protein Design at UW presents RFpeptides, an extension of RoseTTAFold2 and RFdiffusion for de novo design of macrocyclic peptide binders www.nature.com/articles/s41...
nature.com
Accurate de novo design of high-affinity protein-binding macrocycles using deep learning - Nature Chemical Biology
A method for de novo design of peptide macrocyles called RFpeptides has been developed. RFpeptides is an extension of RoseTTAFold2 and RFdiffusion and combines structure prediction and protein backbon...
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Reposted by Alexander Taylor
RCSB Protein Data Bank @rcsbpdb.bsky.social · 08/06/2025
Researchers have discovered previously undetected chemical bonds within archived protein structures, revealing an unexpected complexity in protein chemistry. phys.org/news/2025-0...
phys.org
A new complexity in protein chemistry: Algorithm uncovers overlooked chemical linkages
Proteins are among the most studied molecules in biology, yet new research from the University of Göttingen shows they can still hold surprising secrets. Researchers have discovered previously undetected ...
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Reposted by Alexander Taylor
Kresten Lindorff-Larsen @lindorfflarsen.bsky.social · 08/06/2025
Looks useful: CGBack: Diffusion Model for Backmapping Large- Scale and Complex Coarse-Grained Molecular Systems Includes applications to reverse-CG/backmap multi-chain molecular systems, including densely packed condensates. doi.org/10.1101/2025...
Figure 4 from the paper showing backmapping of TDP-43 droplet systems ranging in size and with what appears to be roughly linear scaling in compute time
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Alexander Taylor @alextaylor314.bsky.social · 16/04/2025
Flow forces are widespread in both in vitro experiments and aggregation in vivo. Straight onto the reading list!
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Reposted by Alexander Taylor
Alexander Taylor @alextaylor314.bsky.social · 10/04/2025
Thrilled to share our new paper on the front cover of JACS! 🧪💊🍾 Kinetic inhibitors of the early steps of #amyloid formation can profoundly affect the resulting fibril polymorphism – suggesting a new strategy to treat protein aggregation diseases. 🔗 pubs.acs.org/doi/10.1021/... 🧵... (1/6)
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Kresten Lindorff-Larsen @lindorfflarsen.bsky.social · 15/04/2025
Do you like CALVADOS but are not quite sure how to make it? We’ve got your back! @sobuelow.bsky.social & @giuliotesei.bsky.social—together with the rest of the team—describe our software for simulations using the CALVADOS models incl. recipes for several applications. 1/5 doi.org/10.48550/arX...
Figure showing the architecture of the CALVADOS package.
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RadfordLab @radford-lab.bsky.social · 10/04/2025
At last our paper is out at JACS and we made the front cover! Thanks to Phospho animation for the image. See doi.org/10.1021/jacs....
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Alexander Taylor @alextaylor314.bsky.social · 10/04/2025
Thrilled to share our new paper on the front cover of JACS! 🧪💊🍾 Kinetic inhibitors of the early steps of #amyloid formation can profoundly affect the resulting fibril polymorphism – suggesting a new strategy to treat protein aggregation diseases. 🔗 pubs.acs.org/doi/10.1021/... 🧵... (1/6)
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University of Leeds @universityofleeds.bsky.social · 28/03/2025
High above the Parkinson steps, a pair of Peregrine Falcons are tending to five eggs! Since 2008, Peregrine Falcons have been nesting intermittently on the Parkinson Tower. During that time, the University has seen fourteen chicks successfully hatch 🐣
Peregrine on the ledge of the Parkinson tower guarding over five eggs
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Chemistry World @chemistryworld.com · 24/03/2025
Biomolecular condensates are fluid blobs that form inside cells. New research finds that they can change the electrochemical gradients at their interfaces, changing their properties, @philipcball.bsky.social reports. #ChemSky
chemistryworld.com
‘Ageing’ cellular blobs could be linked to neurodegenerative diseases
Over time biomolecular condensates' redox activity drops and tangled aggregates linked to conditions like Alzheimer's build-up
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Reposted by Alexander Taylor
bioRxiv Biophysics @biorxiv-biophys.bsky.social · 22/03/2025
Oligomerization enables the selective targeting of intrinsically disordered regions by small molecules www.biorxiv.org/content/10.1101/202…
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University of Leeds @universityofleeds.bsky.social · 21/03/2025
Today marks the first ever #WorldGlaciersDay ❄️ Glaciers are the water towers of the world, supplying freshwater to over half of humanity, but they are at the frontline of the climate crisis. Find out about the important research and glacier initiatives that Leeds academics are involved with 👇🧊
Mount Everest, with tents in the foreground, on a sunny day
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Kresten Lindorff-Larsen @lindorfflarsen.bsky.social · 21/03/2025
CALVADOS now has parameters for phosphorylated amino acids @asrauh.bsky.social @giuliotesei.bsky.social and Gustav Hedemark used a top-down approach in which we targeted experimental data to derive parameters or phosphorylated serine and threonine doi.org/10.1101/2025...
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RadfordLab @radford-lab.bsky.social · 23/02/2025
Delighted our latest paper on amyloid polymorphs is published in JACS- doi 10.1021/jacs.4c16743. Well done all- very proud!
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Alexander Taylor @alextaylor314.bsky.social · 20/03/2025
Initial indication that the onset of dominantly inherited Alzheimer's disease can be delayed by long-term removal of amyloid-β (Aβ) plaques. Not conclusive at this stage, but promising! #alzheimers #dementia See also the Lancet Neurology article itself www.thelancet.com/journals/lan...
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Reposted by Alexander Taylor
Elton Zeqiraj @zeqiraj.bsky.social · 17/03/2025
Excited to report our latest research on new “molecular glues” that specifically lock the BRCC36 isopeptidase complex (BRISC) in an autoinhibited state and reduce interferon signalling. This first-of-its-kind approach could reshape how we target large deubiquitylase (DUB) complexes. rdcu.be/edRwF
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Reposted by Alexander Taylor
Nature @nature.com · 15/03/2025
Researchers have identified 64 genes that help to shape how quickly a person’s brain ages go.nature.com/3DV9TvM
go.nature.com
How fast your brain ages is affected by these 64 genes
Nature - Scientists also identified anti-ageing drugs and experimental compounds that could target the genes to reverse decline.
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Reposted by Alexander Taylor
Nature Portfolio @natureportfolio.nature.com · 15/03/2025
A study in Nature Medicine shows the mechanisms driving amyloid-β clearance in both passively and actively Aβ immunized patients with Alzheimer’s disease. #alzsky 🧪
go.nature.com
Microglial mechanisms drive amyloid-β clearance in immunized patients with Alzheimer’s disease - Nature Medicine
Spatial transcriptomics reveals distinct microglial mechanisms driving amyloid-β clearance in both passively and actively immunized patients with Alzheimer’s disease.
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Reposted by Alexander Taylor
Alexander Taylor @alextaylor314.bsky.social · 28/02/2025
Thought-provoking and insightful new review on #amyloid fibril polymorphism by @ldaubrey.bsky.social and @radford-lab.bsky.social, with a useful simulation Colab alongside it (CoFiSim ☕👨‍💻). A must-read for those interested in how fibril polymorphs form, and why certain polymorphs dominate in vivo!
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Sylvie Callegari @sylviecallegari.bsky.social · 13/03/2025
Thrilled to share the structure of dimerised human PINK1 docked to an endogenous translocase array on the mitochondrial surface, composed of two TOM complexes, bridged by a VDAC2 dimer! Published today in Science www.science.org/doi/10.1126/... @wehi-research.bsky.social @komanderlab.bsky.social
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Eric Topol @erictopol.bsky.social · 13/03/2025
More than 2 decades ago the PINK1 protein was found to be linked to Parkinson's disease, but its structure and how it was activated was not known. Until @science.org today. A triumph for cryo-EM and structural biology, introducing new targets for drug intervention. www.science.org/doi/10.1126/...
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Science Magazine @science.org · 11/03/2025
In Science, researchers detail a nanoscale-resolution reconstruction of a millimeter-scale fragment of human cerebral cortex, giving an unprecedented view into the structural organization of brain tissue at the supracellular, cellular, and subcellular levels. scim.ag/3FvpAKy #BrainAwarenessWeek
A single neuron (white) shown with 5,600 of the axons (blue) that connect to it. The synapses that make these connections are shown in green. The cell body (central core) of the neuron is about 14 micrometers across.
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Kresten Lindorff-Larsen @lindorfflarsen.bsky.social · 12/03/2025
Our review on machine learning methods to study sequence–ensemble–function relationships in disordered proteins is now out in COSB authors.elsevier.com/sd/article/S... Led by @sobuelow.bsky.social and Giulio Tesei
Figure from the paper illustrating sequence–ensemble–function relationships for disordered proteins. ML prediction (black) and design (orange) approaches are highlighted on the connecting arrows. Prediction of properties/functions from sequence (or vice versa, design) can include biophysics approaches via structural ensembles, or bioinformatics approaches via other hetero- geneous sources. The lower panels show examples of properties and functions of IDRs for predictions or design targets. ML, machine learning; IDRs, intrinsically disordered proteins and regions.
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Nature @nature.com · 09/03/2025
A protein involved in Alzheimer’s disease progression has been linked to normal brain ageing, raising the prospect that researchers could target it to stave off age-related mental decline go.nature.com/3XqSge8
go.nature.com
This key protein could be responsible for brain ageing
Nature - An amyloid protein targeted by Alzheimer’s disease therapies seems to be involved in normal mental decline.
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Amyloidosis UK @amyloidosisuk.bsky.social · 06/03/2025
Amyloidosis diagnosis is often delayed, despite better tests and awareness. No matter the type or location, many face this struggle. Why? Read more: amyloidosisuk.org/news/the-dia... #Amyloidosis #RareDisease
The Diagnostic Odyssey

Amyloidosis diagnosis is often delayed, despite better tests and awareness. No matter the type or location, many face this struggle. Why? Read more via the link in the post.
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ldaubrey.bsky.social @ldaubrey.bsky.social · 26/02/2025
Suspect timing of @alextaylor314.bsky.social joining. It's almost like he's only here to see if anyone's talking about his excellent new JACS paper! doi.org/10.1021/jacs...
doi.org
Kinetic Steering of Amyloid Formation and Polymorphism by Canagliflozin, a Type-2 Diabetes Drug
Amyloid formation is involved in widespread health conditions such as Alzheimer’s disease, Parkinson’s disease, and type-2 diabetes. Amyloid fibrils have a similar cross-β architecture, but fibrils formed by a single protein sequence can have diverse structures, varying with time, self-assembly conditions, and sequence modifications. Fibril structure has been proposed to be diagnostic of disease, but why different structures result under different conditions, especially in vitro, remains elusive. We previously identified a small molecule, YX-I-1, which inhibits in vitro amyloid formation by islet amyloid polypeptide (IAPP), a peptide hormone whose amyloid formation is involved in type-2 diabetes. Here, using YX-I-1 as a lead, we identified regulator-approved drugs with similar structures by chemical similarity analysis and substructure searches and monitored the effect of 24 of these potential ligands on IAPP amyloid assembly in vitro. We show that one such compound, canagliflozin (Invokana), a type-2 diabetes drug already in clinical use, can strongly delay the kinetics of IAPP amyloid formation, an activity independent of its intended mode of action [sodium-glucose linked transporter 2 (SGLT2) inhibitor] that may have important therapeutic implications. Combining analysis of amyloid self-assembly kinetics, biophysical characterization of monomer and fibril binding, and cryo-EM of the assembly products, we show that YX-I-1 and canagliflozin target IAPP early in aggregation, remodeling the energy landscape of primary nucleation and profoundly altering the resulting fibril structures. Early binding events thus imprint long-lasting effects on the amyloid structures that form.
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RadfordLab @radford-lab.bsky.social · 02/03/2025
Proud to be part of this great article with @ldaubrey.bsky.social . Of interest to all working on amyloid polymorphs see doi.org/10.1016/j.jmb.2025.169008
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Alexander Taylor @alextaylor314.bsky.social · 28/02/2025
Thought-provoking and insightful new review on #amyloid fibril polymorphism by @ldaubrey.bsky.social and @radford-lab.bsky.social, with a useful simulation Colab alongside it (CoFiSim ☕👨‍💻). A must-read for those interested in how fibril polymorphs form, and why certain polymorphs dominate in vivo!
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Nature @nature.com · 27/02/2025
Slippery proteins in the brain’s blood vessels form a protective barrier that breaks down with age go.nature.com/4kjeHf2
go.nature.com
‘Slime’ keeps the brain safe ― and could guard against ageing
Slippery proteins in the brain’s blood vessels form a protective barrier that breaks down with age, studies in mice show.
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Kresten Lindorff-Larsen @lindorfflarsen.bsky.social · 26/02/2025
CALVADOS-RNA is now published doi.org/10.1021/acs.... This is a simple model for flexible RNA that complements and works with the CALVADOS protein model. Work led by Ikki Yasuda who visited us from Keio University. Try it yourself using our latest code for CALVADOS github.com/KULL-Centre/...
Table of Contents figure showing the CALVADOS-RNA model and a snapshot from a mixed protein-RNA condensate
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