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Cecilia Clementi

@cecclementi.bsky.social
2.1K followers 1.1K following 37 posts

Scientist & Scuba Diver - I love theoretical physics, sharks, and pygmy seahorses - www.instagram.com/clementicecilia - www.physik.fu-berlin.de/en/einricht…

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Cecilia Clementi @cecclementi.bsky.social · 10/11/2025
Our latest paper on the interpretation on Neural Network Potentials is now published on Nature Communications: nature.com/articles/s41.... Congratulations to Klara Bonneau, Jonas Lederer and all authors. In collaboration with Klaus-Robert Müller's group.
nature.com
Peering inside the black box by learning the relevance of many-body functions in neural network potentials - Nature Communications
Machine-learned force fields are becoming increasingly popular but suffer from their “black-box” nature. Here the authors adapt explainable AI techniques to coarse-grained graph neural network potenti...
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Cecilia Clementi @cecclementi.bsky.social · 18/07/2025
Our development of machine-learned transferable coarse-grained models in now on Nat Chem! doi.org/10.1038/s415... I am so proud of my group for this work! Particularly first authors Nick Charron, Klara Bonneau, Aldo Pasos-Trejo, Andrea Guljas.
doi.org
Navigating protein landscapes with a machine-learned transferable coarse-grained model - Nature Chemistry
The development of a universal protein coarse-grained model has been a long-standing challenge. A coarse-grained model with chemical transferability has now been developed by combining deep-learning m...
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Reposted by Cecilia Clementi
Günter Klambauer @gklambauer.bsky.social · 28/02/2025
Extending the RANGE of Graph Neural Networks: Relaying Attention Nodes for Global Encoding Virtual nodes introduced that pass information via attention; reduces oversquashing; improves GNN on molecules; MD22!! P: arxiv.org/abs/2502.13797
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ELLIS @ellis.eu · 26/02/2025
Meet @cecclementi.bsky.social, Einstein Prof. of Physics at @freieuniversitaet.bsky.social 🇩🇪. An ELLIS Fellow, she pioneers #AI4Science & is a member of #ELLISProgram ML for Molecule Discovery. Her research spans Biophysics & Theoretical/Chemical Physics. #WomenInELLIS
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Cecilia Clementi @cecclementi.bsky.social · 20/02/2025
Our new preprint is out: Extending the RANGE of Graph Neural Networks: Relaying Attention Nodes for Global Encoding. arxiv.org/abs/2502.13797 We present a new architecture to address the problem of "short-sightedness" of MLFF based on GNN, which outperform in speed and accuracy Ewald-based GNN.
arxiv.org
Extending the RANGE of Graph Neural Networks: Relaying Attention Nodes for Global Encoding
Graph Neural Networks (GNNs) are routinely used in molecular physics, social sciences, and economics to model many-body interactions in graph-like systems. However, GNNs are inherently local and can s...
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HITS - Heidelberg Institute for Theoretical Studies @hitsters.bsky.social · 11/02/2025
Many thanks to our colloquium speaker Cecilia Clementi @cecclementi.bsky.social from FU Berlin, for providing a deeper understanding of how machine learning and molecular simulations are leveraged to model protein dynamics. Keep an eye out for the video release on the HITS YouTube channel!
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Reposted by Cecilia Clementi
HITS - Heidelberg Institute for Theoretical Studies @hitsters.bsky.social · 03/02/2025
Don't miss our next HITS-SIMPLAIX Joint Colloquium on 10 February at 2:00 PM CET! Cecilia Clementi @cecclementi.bsky.social will talk about Modeling Protein Dynamics with Machine Learning and Molecular Simulation. Sign up ow.ly/h0Wl50UQ2kX to join via Zoom or just come by. @simplaix.bsky.social
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Cecilia Clementi @cecclementi.bsky.social · 13/01/2025
I made panettone tiramisu with mascarpone in the dough and inserts of pistachio coffee and chocolate. With my loyal sourdough starter.
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Reposted by Cecilia Clementi
Hannes Stark @hannes-stark.bsky.social · 12/01/2025
Awesome paper! BioEmu from MSR: Scalable emulation of protein equilibrium ensembles with generative deep learning www.biorxiv.org/content/10.1... Looking forward to hearing more explanainers in tomorrow's reading group session on zoom at 9am PT / 12pm ET / 6pm CET: portal.valencelabs.com/logg
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Cecilia Clementi @cecclementi.bsky.social · 09/01/2025
"[…] To me Physics was not defined by subject matter: the atom, the troposphere, a piece of glass, my bicycle, a magnet, these are all incidentally the subject matter." 🧵 John J. Hopfield (2024 Physics Nobel Prize)
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Cecilia Clementi @cecclementi.bsky.social · 08/01/2025
In 2024 I made a family of ceramic whales by throwing the main body on the wheel and altering the form. 🐳 Now deciding what other pottery animal I can build in 2025. Open for suggestions 😀 #ceramic #pottery
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Cecilia Clementi @cecclementi.bsky.social · 05/01/2025
I tried to make pandoro for the first time. It’s a recipe for pandoro al cappuccino e caramello from an Italian blog I follow. Not fully satisfied with the results but @franknoe.bsky.social is excited to eat it 😀. Next weekend I will try panettone.
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Cecilia Clementi @cecclementi.bsky.social · 25/12/2024
Merry #fishmas! Blue ringed octopus in Lembeh Strait, Indonesia, during a 2018 diving trip with @franknoe.bsky.social
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Cecilia Clementi @cecclementi.bsky.social · 25/12/2024
Merry #fishmas! Blenny from Bonaire, our favorite Caribbean Island, where @franknoe.bsky.social and I spent quite some time in 2021
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Cecilia Clementi @cecclementi.bsky.social · 25/12/2024
Merry #fishmas! Sharks in Rangiroa, French Polynesia, in a 2016 diving trip with @franknoe.bsky.social
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Cecilia Clementi @cecclementi.bsky.social · 25/12/2024
Merry #fishmas! Dolphin in Rangiroa, French Polynesia during a 2016 diving trip with @franknoe.bsky.social
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Cecilia Clementi @cecclementi.bsky.social · 25/12/2024
Merry #fishmas! A couple of cuties from Raja Ampat, from a 2019 trip with @franknoe.bsky.social.
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Cecilia Clementi @cecclementi.bsky.social · 25/12/2024
Merry #fishmas! Picture taken on a diving trip to Cocos Islands in summer 2014.
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Cecilia Clementi @cecclementi.bsky.social · 25/12/2024
Merry #fishmas! This picture is from a diving trip in Raja Ampat 10 years ago but it is still one of my favorites.
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Frank Noe @franknoe.bsky.social · 06/12/2024
Just a little Christmas feast with @cecclementi.bsky.social and team
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John Chodera @jchodera.bsky.social · 06/12/2024
Cecilia Clementi (@cecclementi.bsky.social) kicks off the afternoon session of the ELLIS ML4Molecules Workshop in Berlin!
Cecilia Clementi introduces her talk, "Navigating protein landscapes with machine learned coarse-grained models"
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Frank Noe @franknoe.bsky.social · 06/12/2024
Super excited to preprint our work on developing a Biomolecular Emulator (BioEmu): Scalable emulation of protein equilibrium ensembles with generative deep learning from @msftresearch.bsky.social ch AI for Science. www.biorxiv.org/content/10.1...
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Frank Noe @franknoe.bsky.social · 06/12/2024
Please credit the exceptional team at @MSFTResearch AI for Science. I am privileged to be working with them: Sarah, Tim, @jjimenezluna.bsky.social, Michael, @yuxie.bsky.social Andrew F, Victor, Osama, Bas, Iryna, Yaoyi, Usman @cecclementi.bsky.social
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Frank Noe @franknoe.bsky.social · 02/12/2024
CECAM crowd Lausanne @cecclementi.bsky.social Marilou Venkat Aaron Greg Michael Simon Rafa Pratyush Andy @chhdellago.bsky.social @grant.rotskoff.cc
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