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Alexandra Dallaire

@alexdallaire.bsky.social
240 followers 278 following 45 posts

Symbiotic fungi, genomes and transposons 🍄🧬 🇨🇦 → 🇬🇧 → 🇯🇵

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Reposted by Alexandra Dallaire
Sebastian Schornack @dromius.bsky.social · 05/10/2026
Toulouse - Summer 2027 European Nitrogen Fixation Conference (ENFC17) 22 - 25 August 2027 International Molecular Mycorrhizal Meeting (IMMM8) 26-27 August 2027
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Maya Voichek @mayavoichek.bsky.social · 24/09/2026
Super excited to share my postdoctoral work at @imbavienna.bsky.social @viennabiocenter.bsky.social - We discovered that some retrotransposons, or "jumping genes" 🧬, are able to spread from cell to cell via a new viral infectivity route. A short thread: 🧵👇 (1/7)
AI-generated illustration of the soma-to-germline transmission of retrotransposons described in our work
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Andrew Urquhart @starships-andrew.bsky.social · 24/09/2026
Another step in the #Starship story - they move via a circular intermediate. Helps explain how these elements horizontally transfer and means that we can modify them into transformation vectors (starmids). www.biorxiv.org/content/10.6...
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Arvid Herrmann 🍃 @arvidhema.bsky.social · 08/09/2026
Very happy to see this work out as a preprint! 🌽🌱 How are shoot stem cells specified in the maize embryo? We uncover a small RNA-driven morphogenic circuit linking positional information with auxin, cell wall mechanics & cell division patterning. Check it out 👇 www.biorxiv.org/content/10.6...
biorxiv.org
Specification of embryonic shoot stem cells via a small RNA-driven morphogenic circuit
The specification of embryonic stem cells capable of self-renewing and differentiation into virtually any cell type, is one of the most consequential events in the development of a multicellular organ...
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Yasin Dagdas @plantophagy.bsky.social · 29/07/2026
If I were an Early Career Researcher (#ECR) today, I wouldn’t join a lab that doesn’t #preprint (the PI agreed to keep paying me until my paper is finally published). It now takes ages to get papers through peer review, and without preprints you’re putting your future in someone else’s hands.
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Genome Biology and Evolution @genomebiolevol.bsky.social · 28/07/2026
Tek et al. report chromosome-scale genome assemblies for four duckweed species, the smallest and fastest-growing angiosperms, which exhibit extreme morphological reduction yet retain remarkable genomic plasticity. 🔗 doi.org/10.1093/gbe/evag163 #societyjournal #genome
doi.org
Chromosome-Scale Genome Assemblies of Duckweeds Provide Insights Into Genomic Plasticity, Aquatic Adaptation, and Morphological Reduction
Abstract. Duckweeds (Lemnaceae) present a striking example of convergent genome evolution following the return from land to water. As the smallest and fast
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Reposted by Alexandra Dallaire
Tominaga K. (tomiken) @pacyc184.bsky.social · 16/07/2026
J. Craig Venter 1946–2026 | Nature Biotechnology
nature.com
J. Craig Venter 1946–2026 - Nature Biotechnology
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Sebastian Schornack @dromius.bsky.social · 13/07/2026
Preprint! How do "friendly" rhizobia build a legume nodule? @albinteulet.bsky.social found that some may carry hidden transcription factors - proteins that mimic DNA-binding folds to enter the plant nucleus and rewrite its developmental program. www.biorxiv.org/content/10.6... (1/6)
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Genome Biology and Evolution @genomebiolevol.bsky.social · 14/07/2026
@therealpdogue.bsky.social , Salzberg & Wolfe find evidence that virus-like elements were present in the common ancestor of all terrestrial fungi, and that they were already subdivided into killer and helper types by this time. 🔗 doi.org/10.1093/gbe/... #societyjournal #genome #evolution
doi.org
Evidence that Zymocin-Like Killer Plasmids Were Present in the Common Ancestor of Terrestrial Fungi
Abstract. Some budding yeasts secrete killer toxins made by linear dsDNA plasmids located in the cytosol. The best-known example is the Kluyveromyces lacti
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Sebastian Schornack @dromius.bsky.social · 09/07/2026
The 'heart' of the #Mycorrhiza #fungi #symbiosis is the arbuscule where plant and fungus exchange nutrients and carbon. Try the arbuscule growth simulator. Let me know how you adjust parameters to get the most beautiful arbuscules. schornacklabslcu.github.io/Arbuscule-Sim/
image of the graphics interface of a simulation software that renders branching fungal hyphae within cells
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Ketan Joshi @ketanjoshi.co · 01/07/2026
NEW BLOG FOR YOU Google's energy consumption numbers in their new climate report are mind-blowing. 2 years ago they flipped from linear to exponential growth, and their climate impact is blowing out, too. A WILD testament to the obscene bloat and waste of GenAI: ketanjoshi.co/2026/07/01/g...
a chart showing google's rising energy consumption - huge, and rising faster than ever beforea chart showing google's rising energy consumption - huge, and rising faster than ever beforea chart showing google's rising energy consumption - huge, and rising faster than ever beforeGoogle's total energy consumption more than new zealand
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University of Cambridge @cam.ac.uk · 30/06/2026
What if one organism could copy itself and merge with others, weaving vast living networks? Meet the arbuscular mycorrhizal fungi 🦠 Cambridge researcher Dr Jennifer McGaley from @camplantsci has filmed these fungi in action for the very first time. Find out more 👉 bit.ly/4ghAynD
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Razzball @razzball.bsky.social · 26/06/2026
my kind of Jubilee, the Japanese national team vs. 100 kids
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Jen McGaley @jenmcgaley.bsky.social · 24/06/2026
Very happy this is now published in full! Symbiotic phosphate transporter dynamics in rice expose functional plasticity of the arbuscules www.nature.com/articles/s41... A thread of some of our findings (and timelapses) below 🧵🔬🎥
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Nadia Aubin-Horth @naubinhorth.bsky.social · 18/06/2026
Nous cherchons un ou une collègue au département de Biologie de l'Université Laval, à Québec: Professeure ou professeur en biologie cellulaire, biologie moléculaire ou génétique. Partagez dans vos réseaux! www.rh.ulaval.ca/emplois-disp...
rh.ulaval.ca
Professeure ou professeur en biologie cellulaire, biologie moléculaire ou génétique | Ressources humaines | Université Laval
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Jens Boch @mikrobenjaeger.bsky.social · 17/06/2026
Awesome! 👏 Finally, science has convinced sufficient politicians to approve the new NGT-rules to enable CRISPR-based plant breeding! Time to celebrate!🎉🎊🥂🧬✂️🌱 www.europarl.europa.eu/news/en/pres...
europarl.europa.eu
New genomic techniques for plants to boost innovation in sustainable agriculture | News | European Parliament
Parliament has adopted new rules facilitating access to new plants that are climate and pest resistant, give higher yields and require fewer pesticides.
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David Ho @davidho.bsky.social · 09/06/2026
Japan reforested with Japanese cedar (sugi) and cypress (hinoki) in the 1950s to rebuild post-war forests. Now the pollen gives 40%+ of its population hay fever. Climate change extends pollen seasons further. Today’s decisions shape tomorrow’s reality. Short-term fixes can become long-term crises.
bbc.co.uk
Japan is gripped by mass allergies. A 1950s project is to blame
A decision made 70 years ago to reforest vast swathes of Japan with just two kinds of tree has come back to haunt the country.
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Etienne Bucher 🌾🧬🇪🇺 @plantepigenetics.ch · 05/06/2026
We just published our new paper about an active Helitron transposon in wheat 🌾🧬 We found that it can be mobilised by heat stress when DNA methylation is reduced. We document its full lifecycle: RNA -> circular DNA -> integration www.nature.com/articles/s41... #TEsky
nature.com
An active Helitron transposon family in wheat - Nature Plants
Helitrons are a recently identified category of transposons. This study reveals that heat stress combined with reduced DNA methylation can mobilize a Helitron family in wheat. Its mobilization is gene...
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Sophien Kamoun @kamounlab.bsky.social · 04/06/2026
World map of antimicrobial resistance @DTUtweet www.eurekalert.org/news-release...
eurekalert.org
New and more detailed world map of antimicrobial resistance
There are large geographical differences in both how frequently resistant genes occur and in which types of bacteria the genes are found. This is shown by analyses of sewage from throughout the globe,...
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Dr. Tyler A. Elliott @transposableman.bsky.social · 04/06/2026
#TEsky Transposons drove the evolution of a male sex-determining gene from a female gene with deep introgression across cichlids doi.org/10.1126/scia...
doi.org
Transposons drove the evolution of a male sex-determining gene from a female gene with deep introgression across cichlids
A gene from the female pathway was repurposed to determine male sex in tilapia, revealing an unusual evolutionary mechanism.
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Reposted by Alexandra Dallaire
Dr. Danny Haelewaters 🏳️‍🌈🍄🪰🦇🔬🧬 @dhaelewa.bsky.social · 01/06/2026
Please take the time to review and sign this petition in support of the U.S. National Fungus Collections, which are being threatened in the face of the USDA reorganization efforts. c.org/KQWY7fNhGw 🍄
c.org
Sign the Petition
Preserve and support the U​.​S. National Fungus Collections
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Plant & Cell Physiology @plantcellphysiol.bsky.social · 01/06/2026
Making Connections...🖇️ Koh Aoki & Ayako Tsushima offer a compelling insight into interspecific secondary #plasmodesmata and their importance in establishing symplastic connections between #ParasiticPlants and their hosts #OpenAccess: doi.org/10.1093/pcp/... #PlantScience
doi.org
Interspecific secondary plasmodesmata at the parasitic interface
Abstract. Obligate parasitic plants often establish symplastic connections with their hosts. This symplastic continuity is mediated by plasma membrane-line
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Department of Plant Sciences Cambridge @camplantsci.bsky.social · 27/05/2026
Huge congratulations to Beverley Glover & Uta Paszkowski on being elected Fellows of the @royalsociety.org - a wonderful recognition of their significant contributions to plant sciences! 🎉 Read more: tinyurl.com/3vetucr4 @beverleycubg.bsky.social @paszkowskilab.bsky.social 🧪
Professor Beverley Glover (left) and Professor Uta Paszkowski (right) – new Fellows of the Royal Society 2026. Photos © University of Cambridge.
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Nature Reviews Genetics @natrevgenet.nature.com · 26/05/2026
ICYMI: New online! The long reach of the Red Queen
dlvr.it
The long reach of the Red Queen
Nature Reviews Genetics, Published online: 19 May 2026; doi:10.1038/s41576-026-00976-wRed Queen dynamics describe a mode of evolution in which interacting biological entities continually adapt and counteradapt. This Comment discusses the pervasiveness of these dynamics within genomes, which can involve selfish genetic elements, and highlights building evidence that they can even drive compensatory coevolution among subunits of essential protein complexes.
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Thiago Carvalho @cyrilpedia.bsky.social · 26/05/2026
'We find that the Ty3-like giant transposon Burro1 is an ancient element that retains its mobility. Burro1 has incorporated a host-derived anti-apoptotic protein that upregulates upon stress and improves stem cell resilience, resulting in enhanced regenerative abilities in its host.'
cell.com
Host-transposon mutualism supports regeneration in planarians
Lee et al. find that the planarian transposon Burro1 bolsters stem cell resilience by producing a functional host-derived caspase inhibitor during physiological stress. By suppressing apoptosis, activ...
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Joe Walker @evojfwalker.bsky.social · 19/05/2026
RNA from herbarium samples is more stable than previously thought and can be extracted for different uses genome.cshlp.org/content/earl.... Study led by @atyszka.org and in collaboration with @philcarella.bsky.social @khongsamchia.bsky.social @phylonatworks.bsky.social @sciencedrew.bsky.social
genome.cshlp.org
Herbaria provide a valuable resource for obtaining informative mRNA
Although DNA has built the framework for molecular insights from museum collections, the utility of archival RNA remains largely unexplored. Likely a consequence of the known instability of RNA relative to DNA, this has effectively precluded the use of herbaria for transcriptomics. Here, we challenge the assumption that herbaria cannot be used for transcriptomics by assembling transcriptomes from RNA extracted from herbarium specimens. Through systematic comparison of transcriptomes from fresh-collected, silica-dried, and archival specimens, we demonstrate the suitability of herbarium-derived RNA for transcriptomics. We show the practical applicability of archival mRNA by functionally validating a plant immune receptor synthesized from a specimen collected in 1956. These results contradict the community consensus regarding archival RNA and open the door to subsequent transcriptomic explorations of rare and extinct plant species. Our findings highlight the importance of preserving and utilizing the diversity embedded within herbarium collections.
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New Phytologist @newphyt.bsky.social · 07/05/2026
#Viewpoint: Status of mycorrhiza research in 2026 @alexdallaire.bsky.social & Hiromu Kameoka 👇 📖 nph.onlinelibrary.wiley.com/doi/10.1111/... #LatestIssue #PlantScience
Fig. 3 Cellular organization of arbuscular mycorrhiza (AM) fungi illuminated by single-nucleus RNA sequencing (snRNA-seq) and spatial transcriptomics.
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New Phytologist @newphyt.bsky.social · 01/05/2026
Submit your abstract for the New Phytologist Editor-in-Chief Symposium 'Collections through time: legacy and innovation' Deadline: 15 May Join us in Tartu, Estonia on 3 July 2026 👇 www.newphytologist.org/events/eics-... #PlantScience
newphytologist.org
Collections through time: legacy and innovation
Our annual New Phytologist Editor-in-Chief Symposium will be held on Friday, 3 July 2026, at the University of Tartu, home institution of New Phytologist’s Editor-in-Chief Maarja Öpik.
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GetGenome @getgenome.bsky.social · 16/04/2026
A quick reminder that the #GGFungi2026 Call For Projects closes on 21st April — just a few days away!  If you’re considering applying, now is the time: getgenome.net/callforproje...
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Jaruwatana (Sodai) Lotharukpong @sodail.bsky.social · 31/03/2026
Our work on chromatin evolution in brown algae is finally out! This is also my first "co-first author" paper!! I’m excited to share what we found 👇
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New Phytologist @newphyt.bsky.social · 26/03/2026
✨ Paper spotlight ✨ (🧵 1/6) Status of mycorrhiza research in 2026 nph.onlinelibrary.wiley.com/doi/10.1111/...
Fig. 3 Cellular organization of arbuscular mycorrhiza (AM) fungi illuminated by single-nucleus RNA sequencing (snRNA-seq) and spatial transcriptomics.
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Hajk-Georg Drost @hajkdrost.bsky.social · 24/03/2026
How much protein diversity can Life on Earth actually generate? With DIAMOND DeepClust, we show how billions of proteins across the tree of life can be clustered at low-identity for downstream analytics tasks. 📚Paper: www.nature.com/articles/s41... 💻Code: github.com/bbuchfink/di...
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New Phytologist @newphyt.bsky.social · 24/03/2026
Advances in #mycorrhizal symbiosis research, including highlights from ##iMMM2025 📖 nph.onlinelibrary.wiley.com/doi/10.1111/... #Viewpoint by Dallaire and Kameoka @alexdallaire.bsky.social
Cellular organization of arbuscular mycorrhiza fungi illuminated by single-nucleus RNA sequencing and spatial transcriptomics.
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Alexandra Dallaire @alexdallaire.bsky.social · 24/03/2026
The first publication from the Dallaire and Kameoka labs is out! A forward-looking review on the status of mycorrhiza research in 2026, with emphasis on AM fungi doi.org/10.1111/nph.... @newphyt.bsky.social @ulaval.ca 🇨🇦
doi.org
Status of mycorrhiza research in 2026
Mycorrhizal symbiosis improves the nutrition of most land plants and plays key roles in nutrient cycling and ecosystem function. To understand and leverage the biology of mycorrhizal symbioses for su...
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CanFunNet @canfunnet.bsky.social · 23/03/2026
Dear CanFunNet community, we are happy to announce the return of our virtual conference this year between August 5-7! We encourage you to save the date and hope to see you all again this year! More information on registration and abstract submission to come soon! #CFN26
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Ben Auxier @benauxier.bsky.social · 17/03/2026
Now up on bioRxiv! Working with @dianzheng.bsky.social and Jan van Kan, we tested how DNA is distributed between nuclei in multinucleate fungal spores. www.biorxiv.org/content/10.6...
biorxiv.org
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Alexandra Dallaire @alexdallaire.bsky.social · 16/03/2026
Only ~100€ to attend this workshop with an awesome speaker lineup 💫
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Alexandra Dallaire @alexdallaire.bsky.social · 13/03/2026
Every year or so, the position of AM fungi in the Fungal Tree of Life seems to shift. It happened again in 2025-2026: AM fungi were reported as sister to Mucoromycotina, then as sister to Dikarya + Entorrhizomycota. One consistent takeaway, though, is the timing...
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Alexandra Dallaire @alexdallaire.bsky.social · 12/03/2026
Wow! Here's some solid evidence that arbuscular mycorrhizal fungi use small RNAs to regulate plant gene expression. Congratulations to the teams of @carogutj.bsky.social and Arne Weiberg doi.org/10.1038/s414...
doi.org
Cross-kingdom RNA interference promotes arbuscular mycorrhiza development - Nature Plants
The authors provide evidence that symbiotic fungi forming widespread arbuscular mycorrhiza symbioses use cross-kingdom RNA interference to silence plant genes and promote their colonization of host ro...
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Genome Biology and Evolution @genomebiolevol.bsky.social · 09/03/2026
Hron, @dalibormiklik.bsky.social @hpaces.bsky.social et al. demonstrate that avian dot microchromosomes harbor widespread gene attrition; retained dot chromosomes genes exhibit a new form of dynamic genetic instability - sequence stuttering. 🔗 doi.org/10.1093/gbe/evag038 #genome #evolution #birds
doi.org
Decoding the Avian Missing Gene Mystery: Dot Chromosomes Unmask Extensive Gene Loss and Novel Genetic Instability
Abstract. The apparent absence of numerous conserved vertebrate genes from avian genomes has puzzled researchers for over a decade. In recent years, a subs
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Alper Akay @alperakay.bsky.social · 06/03/2026
PhD position in our lab - 4-year funded by BBSRC and @nrpdtp.bsky.social in collaboration with @earlhaminst.bsky.social and Inspiralis Ltd. Open to UK fee qualifying students - UK citizens and citizens of Ireland (residency requirement), etc biodtp.norwichresearchpark.ac.uk/projects/how...
biodtp.norwichresearchpark.ac.uk
How do RNA molecules shape genome regulation in the nervous system? (AKAY_U26CASE) | Doctoral Training Partnership
This is open to Home Fee Status candidates only. This PhD project will investigate how RNA modifications influence the activity of topoisomerase I (TOP1), a crucial enzyme that regulates DNA…
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Katharina Melkonian @katharinamel1.bsky.social · 04/03/2026
1/ ✨ New preprint alert ✨ It is my pleasure to share: "Stepwise evolution of the developmental and symbiotic functions of DELLA in land plants" Here we investigated the role of the single GRAS transcription factor DELLA in #MyMarchantia doi.org/10.64898/202... #PlantScience A thread...
doi.org
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James McCulloch @jamesimcc.bsky.social · 03/03/2026
Why do the chromosomes of cyperids (sedges & rushes) split and fuse so regularly on evolutionary timescales? Is it because they have so many centromeres? Our new preprint, the first major paper of my PhD, addresses this question. 🧵⬇️ 1/12 www.biorxiv.org/content/10.6...
A sedge. It may look unassuming but its genome has several unusual features.
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Maddy Seale @maddyseale.bsky.social · 13/02/2026
Out in @science.org this week, two fungal enzymes synthesise DHHA, which controls cell wall porosity and turgor in plant pathogenic fungi www.science.org/doi/10.1126/... #mycology #plantscience
science.org
Dihydroxyhexanoic acid biosynthesis controls turgor in pathogenic fungi
Many plant pathogenic fungi penetrate host surfaces mechanically, using turgor pressure generated by specialized infection cells called appressoria. These appressoria develop semipermeable cell walls ...
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Fungal Ecology 🍄 @fungal-ecology.bsky.social · 04/02/2026
When humans create an artificial island, how do fungi colonize this new habitat? Using the Danish island Peberholm as an experimental system, a recent Fungal Ecology article examines arbuscular mycorrhizal (AM) fungal succession on new land. doi.org/10.1016/j.fu... 📷 Wikipedia
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Jonathan Eisen @phylogenomics.bsky.social · 02/02/2026
Rereading these two papers: Holes in the hologenome: why host-microbe symbioses are not holobionts. journals.asm.org/doi/10.1128/... The Hologenome Concept: Helpful or Hollow? journals.plos.org/plosbiology/... And I still find myself in general agreement with most of the points in them
journals.asm.org
Holes in the Hologenome: Why Host-Microbe Symbioses Are Not Holobionts | mBio
ABSTRACT The advent of relatively inexpensive tools for characterizing microbial communities has led to an explosion of research exploring the diversity, ecology, and evolution of microbe-host systems...
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Alexandra Dallaire @alexdallaire.bsky.social · 31/01/2026
Interesting kind of genomic compartmentalisation in wheat: transposable elements are enriched around genomic regions that were under selection during domestication 🧬
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Oded Rechavi @odedrechavi.bsky.social · 27/01/2026
What the hell? No recombination no problem? "These findings challenge the boundary between sex and clonality, revealing a unique evolutionary strategy linking genome architecture, recombination loss, and transmission bias." www.biorxiv.org/content/10.6...
biorxiv.org
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Alexandra Dallaire @alexdallaire.bsky.social · 21/01/2026
A new AMF genome is out, and it is a beauty! Congrats for putting together the monstrously big Gigaspora margarita 🙌 www.biorxiv.org/content/10.6...
biorxiv.org
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Stephen Heard @stephenbheard.bsky.social · 13/01/2026
It's easier to tear down than build up, and in science we have a bad case of that. So: how to lead a journal club that actually finds value in what you read. scientistseessquirre... 🧪
scientistseessquirrel.wordpress.com
How to lead a journal club you won’t be embarrassed by later
One of the jobs facing an early-career scientist, and a developing writer, is to learn what their field’s literature looks like. One of the best tools to that end is the journal club. If you’ve nev…
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