Sign in

Artem Ilin

@adc34.bsky.social
662 followers 278 following 280 posts

Postdoc at Stockholm University. TEs, epigenetics, bioinformatics, small RNA and Drosophila 🪰! artemilin.dev

PostsRepliesMedia
Reposted by Artem Ilin
Antoine Molaro @antoinemolaro.bsky.social · 08/10/2026
Hello World ! Its pre-print time ! Awesome collaboration led by Michel Cohen-Tannoudji (not on Bsky) and the one and only @deborahbourchis.bsky.social. #BFF We solved the molecular mechanism underlying a mysterious hybrid incompatibility in mice: the DDK syndrome. 🧵🍿 www.biorxiv.org/content/10.6...
biorxiv.org
Transposable Element insertions Repurpose Immune Endonucleases as Drivers of Reproductive Isolation in Mice
The emergence of reproductive barriers between closely related populations is a fundamental step in speciation, yet the underlying genetic mechanisms remain poorly understood in mammals. Here we resol...
610045
Reposted by Artem Ilin
Philip Leftwich @philipleftwich.bsky.social · 08/10/2026
📢 PhD alert! Funded 4-year PhD with @aries-dtp.bsky.social at @uniofeastanglia.bsky.social. Medfly mothers coat their eggs in antimicrobial peptides. #CRISPR, #microbiome sequencing: aries-dtp.ac.uk/studentships... 📅 Deadline: 16 Dec 2026 🎓 Start: 1 Oct 2027 #PhD #FundedPhD@aries-dtp.bsky.social
aries-dtp.ac.uk
Cloaks and Daggers: Fitness Effects of Ceratotoxin Antimicrobials In A Global Fruitfly Pest | Aries
Professor Tracey Chapman, School of Biological Sciences, University of East Anglia – contact me Dr William Nash, UEA Dr Phil Leftwich, UEA Dr Emily Fowler, UEA Dr Lucy Friend (RA), UEA In all species…
086
Reposted by Artem Ilin
Matthew Cobb @matthewcobb.bsky.social · 06/10/2026
A lot of excitement on here about the article in Science summarising the discoveries of @alistairsponsel.bsky.social and Brian Sutton, just published in the Journal of the History of Biology. Some people have asked, so here is what I think they show, and what are the implications:
link.springer.com
Photograph 49 is the Key to Understanding the History of Rosalind Franklin’s DNA Photograph 51 - Journal of the History of Biology
This essay, co-authored by a historian of science and an X-ray crystallographer, sheds new light on Rosalind Franklin’s Photograph 51. We refute the infamous claim that, unlike James Watson, Franklin ...
4247143
Reposted by Artem Ilin
Matthew Cobb @matthewcobb.bsky.social · 06/10/2026
11. I will not be taking questions.The story of a woman whose data was stolen by two ambitious men who then did not credit her seems to be too powerful to be overcome by mere facts. This is, of course, all Watson's fault because of how he presented events. We are all hoist by his petard.
35110
Reposted by Artem Ilin
Ursula Oggenfuss @oggenfussursula.bsky.social · 06/10/2026
Are you interested in learning how genomes of weird fungi and protists evolve and are you looking for an exciting PhD opportunity? Jolien van Hooff and I are looking for an enthusiasic PhD candidate at Wageningen University: www.wur.nl/en/vacancy/p... #TEworldwide #Fungi #Protists #Genome
wur.nl
PhD position in genome evolution and architecture in unicellular eukaryotes
Are you fascinated by how eukaryotic genomes evolve? Do you want to look beyond model organisms and point mutations to uncover the complexity of genome evolution?
13237
Artem Ilin @adc34.bsky.social · 05/10/2026
Why do scientists think that the dinosaurs were made extinct by an asteroid impact? by brilliant bsky.app/profile/theo...
000
Reposted by Artem Ilin
Nobel Prize @nobelprize.org · 05/10/2026
BREAKING NEWS The 2026 Nobel Prize in Physiology or Medicine has been awarded to Karl Deisseroth, Peter Hegemann and Georg Nagel “for their discoveries concerning light-gated ion channels and optogenetics.”
241072516
Reposted by Artem Ilin
Tianxiong (Bear) Yu @tianxiong-bear-yu.bsky.social · 05/10/2026
Excited to share our latest paper in Genome Biology! We analyzed 405 wild koalas to reconstruct the ongoing invasion of KoRV-A, one of the few opportunities to observe ERV evolution in real time. Great work by all collaborators. @lubanlab.bsky.social link.springer.com/article/10.1...
link.springer.com
The trajectory of KoRV-A evolution suggests initial integration into the koala germline genome near Coffs Harbour in New South Wales - Genome Biology
Background Koala Retrovirus-A is a gamma-retrovirus that is spreading across wild koala populations through horizontal and vertical transmission, contributing significantly to genomic diversity across...
0104
Artem Ilin @adc34.bsky.social · 04/10/2026
Captivating review of mariner transposons from 2001. Besides its interesting history, it contains many cool insights that are still very much relevant today. It also tells us the origin of the name. Heartwarming, and nothing to do with sailors! academic.oup.com/genetics/art...
A drawing of a fly with mosaic-colored eyes by Emilie Capy. Crayola, paper, 1991.
071
Artem Ilin @adc34.bsky.social · 04/10/2026
Source of the figure as well as a lot of interesting stuff on elements produced during Cassiopea A explosion: chandra.harvard.edu/photo/2017/c... God, I love NASA
chandra.harvard.edu
Cassiopeia A
Chandra Reveals the Elementary Nature of Cassiopeia A
000
Artem Ilin @adc34.bsky.social · 04/10/2026
I've been reading a bit on how many chemical elements are involved in the creation and maintaining life (spoiler: for that we need most of the guys until W74, although some fantastic creatures even use U, which is 92nd) and found this cool scheme. Well, as Moby taught us, we're all made of stars💫
Found here https://chandra.harvard.edu/photo/2017/casa_life/index.html
131
Reposted by Artem Ilin
Dr Hannah M. Rowland @hannahmrowland.bsky.social · 01/10/2026
Hope your day was better than Darwin’s, on this day 165 years ago
I am very poorly today & very stupid & hate everybody &everything.

Charles Darwin
Letter to Charles Lyell
1st October 1861
202100252460
Reposted by Artem Ilin
Drosophila @malecnsfly.bsky.social · 01/10/2026
a short history of me, in crayon. 400 million years of insects, a rocket in 1947, a white-eyed fly in a milk bottle, and now every one of my neurons, mapped and running in a jar. #SciArt #SciComm #drosophila
0156
Reposted by Artem Ilin
Alek Erickson @alekerickson.bsky.social · 25/09/2026
Human faces are unique. Though our appearance changes greatly as we age, it is our embryonic development that sets the course for a lifetime of individuality. Read more in our recent publication: www.nature.com/articles/s41...
nature.com
Atlas of cell types and regulatory elements underlying human facial diversity - Nature Genetics
Single-cell transcriptomics, spatial transcriptomics and chromatin accessibility maps of the human craniofacial region in developing embryos provide insights into the mechanisms underlying facial vari...
073
Reposted by Artem Ilin
Greg Priest @gregpriest.bsky.social · 25/09/2026
Thomas Hunt Morgan was born OTD in 1866. If you're ever feeling that your work is uending and unedifying, remember that he once said this: "Two years work wasted, I have been breeding those flies for all that time and I've got nothing out of it." 🌱🐋🧪 #HistSTM
Photograph of Morgan's Fly Room at Columbia University, around 1920. American Philosophical Society.
34924
Reposted by Artem Ilin
Torben Heick Jensen @heick.bsky.social · 26/09/2026
Final call for postdoc position in the Heick Jensen lab in Aarhus, Denmark. Please apply here: www.au.dk/om/stillinger/job/postdoc-position-in-nuclear-rna-biology-1
044
Reposted by Artem Ilin
Emma R Andersson @anderssonlab.bsky.social · 23/09/2026
🧬 Preprint! 🧵 Our goal is to genetically manipulate every embryonic germ layer to enable high throughput in vivo studies. We previously showed mouse ectoderm can be targeted by amniotic injection, enabling cell-specific manipulation, lineage tracing, and knockouts. But how to reach mesoderm?
Schematic of method developed and application. At embryonic day 7.5, a lentiviral library carrying unique 30-nucleotide barcodes and a fluorescent reporter is injected into the mouse exocoelomic cavity. An E8 embryo cross-section shows that this cavity is continuous with the intraembryonic coelomic cavity, allowing the virus to reach and barcode mesodermal progenitors, including lateral plate and paraxial mesoderm.
86631
Reposted by Artem Ilin
Quanta Magazine @quantamagazine.org · 23/09/2026
“Jumping genes” can cut and paste themselves into new locations in the genome. But they’re more than parasites or genetic junk. www.quantamagazine.org/how-virus-li…
04620
Reposted by Artem Ilin
Cell - a Cell Press journal @cp-cell.bsky.social · 23/09/2026
Now online! Direct cell-to-cell transmission of retrotransposons
dlvr.it
Direct cell-to-cell transmission of retrotransposons
Retrotransposons can infect neighboring cells using a mechanism that relies on a small fusogen-like protein rather than on the envelope protein that is typically required for infection.
28137
Reposted by Artem Ilin
Arnaud Martin @evolvwing.bsky.social · 20/09/2026
Such an essential piece. To share with students, trainees, and colleagues all around. (from 7 years ago) www.nature.com/articles/d41...
nature.com
Novelist Cormac McCarthy’s tips on how to write a great science paper
The Pulitzer prizewinner shares his advice for pleasing readers, editors and yourself.
13314
Reposted by Artem Ilin
GEValT @gevaltcrispr.bsky.social · 17/09/2026
Meet GEValT! Germline Engineering by Viral transduction! No more injections www.biorxiv.org/content/10.6...
biorxiv.org
Infectious transgenesis in arthropods
In the last decade, there has been an explosion in the development of in vivo germline genetic editing technologies in arthropods, first pioneered by the Receptor-Mediated Ovary Transduction of Cargo ...
24318
Reposted by Artem Ilin
Martin Steinegger 🇺🇦 @martinsteinegger.bsky.social · 30/08/2026
Run AlphaFold2 locally in your browser via WebGPU, no installation needed, it's just a static webpage using your own GPU or CPU. Short proteins run in seconds. Larger ones are still slow: a 291-aa protein takes ~7 minutes on my M4 Pro. ❗It's just a PoC. 🌐 martin-steinegger.github.io/alphafold2-w...
117841
Artem Ilin @adc34.bsky.social · 14/09/2026
The latest connectome of male fruit fly CNS was released less than a month ago by Janelia and now people make it cut döner, solve Rubik's cube and play blackjack (terribly). What a time, what a time www.janelia.org/project-team... fanpu.io/games/flyjack/ #drosophila
020
Artem Ilin @adc34.bsky.social · 13/09/2026
www.annualreviews.org/content/jour... #TESky
annualreviews.org
The History of Transposable Element Invasions in Drosophila melanogaster
As a fundamental biological principle, genomic information is typically transmitted vertically from parent to offspring. Occasionally, however, genetic material is transferred horizontally between spe...
0105
Reposted by Artem Ilin
Michael Baym @baym.lol · 13/09/2026
Ten years ago Tami, Roy, and I released a movie we made of antibiotic resistance evolving in real time. I thought maybe a couple thousand people tops would see it. I couldn't have imagined it would be seen millions of times, and be taught from middle school through the graduate level worldwide
23437127
Reposted by Artem Ilin
Anton Goloborodko @golobor.bsky.social · 03/09/2026
1/ out in @science.org! We found a new asymmetry in large-scale chromosome structure: sister chromatids are shifted by hundreds of kb in the 5′→3′ direction of their inherited strands! A close collaboration w/ @gerlichlab.bsky.social , led by @flaviacorsi.bsky.social www.science.org/doi/10.1126/...
215365
Reposted by Artem Ilin
sandraduharcourt.bsky.social @sandraduharcourt.bsky.social · 08/09/2026
Very happy to see our Nature Reviews Genetics article on programmed DNA elimination across eukaryotes out! A fantastic collective effort with an amazing group of colleagues, born from inspiring discussions at the Fondation des Treilles. rdcu.be/tmvKgsPZNhBa @laurarossevo.bsky.social
rdcu.be
39343
Reposted by Artem Ilin
Max Farnworth @maxfarnworth.bsky.social · 31/08/2026
I am advertising a 3 year postdoc position. This person is going to focus on cell type development and evolution across key integration centres of the insect brain in four insect species. See details in the ad.
1514
Artem Ilin @adc34.bsky.social · 04/09/2026
Instead of bluetorial for our preprint, I've decided to write a short post series in my blog, because there's so much to share. Here's the first part describing the initiation of the project and our reasoning for the new nomenclature. Following parts are coming really soon, I promise!😅
artemilin.dev
Transposonspotting, or How We Found One Unlucky TE and Wrote a Paper about It: Part I – Postdoc Postpunk
Find out why there is still no second part in my series on Drosophila TE names — and how I spent my summer instead.
010
Reposted by Artem Ilin
Julie Carnesecchi @jcarnesecchi.bsky.social · 04/09/2026
📢 Funded M2 internship Montpellier, 2027 We recruit a student for 6-month joint IGMM/CRBM project on how RNA binding shapes Hox TF nuclear organisation & developmental function. #Drosophila #RNA #Hox #genetics #imaging #DevelopmentalBiology #Internship Full details on LinkedIn 👇 lnkd.in/p/eqAQFHua
lnkd.in
M2 Internship offer BIOLuM | Julie Carnesecchi
⭐ We are recruiting an M2 student for a 6-month internship in Montpellier in 2027!   Together with Albert Tsai, we are looking for a motivated Master 2 student to join our collaborative project: From ...
123
Artem Ilin @adc34.bsky.social · 04/09/2026
I'm in love with Helsinki🇫🇮 What an amazing beautiful city, 1.5 days weren't nearly enough to see it all!
010
Reposted by Artem Ilin
Alexis Verger 🧬🧫🧪 @alexis-verger.cpesr.fr · 03/09/2026
wait, wait, what ????? protein-coding chimeric mRNAs 🤯 www.nature.com/articles/s41...
nature.com
Functional chimeric mRNAs encode proteins in mammalian immunity - Nature
Inflammation induces interchromosomal DNA interactions that bring parent genes into close proximity, facilitating the formation of chimeric mRNAs that encode physiologically relevant, functional prote...
13416
Reposted by Artem Ilin
Sternberg Lab @sternberglab.bsky.social · 01/09/2026
Just published! IStrons are a unique class of transposable elements that pack three distinct functions in one nucleotide sequence. In this work, we used pooled library mutagenesis and high-throughput sequencing to systematically map the sequence and structural features that govern these functions.
1189
Artem Ilin @adc34.bsky.social · 02/09/2026
I wouldn't expect anything less than this brilliant metaphor from xkcd
020
Reposted by Artem Ilin
Peter Andersen @germline.bsky.social · 02/09/2026
Finally - the 🧵! So, the piRNA pathway defends the animal germline from transposons. But most of what we know comes from narrow developmental windows like late oogenesis, where it's easiest to study. We asked if the pathway is the same across development. It is not! /+
47737
Reposted by Artem Ilin
Emiliano Sotelo @jemilianosf.bsky.social · 11/08/2026
Help us untangle repetitive genomic variants! 🧬 We’re looking for an undergrad/master's intern (4 months, Spring 2027) with Python & Bash skills to map regulatory sequences in structural variants in the Bernardo Rodriguez Martin lab. Details & apply: tinyurl.com/mtkknphc #TEsky
tinyurl.com
Centre for Genomic Regulation Website
012
Reposted by Artem Ilin
Peter Andersen @germline.bsky.social · 29/08/2026
We watched piRNAs and transposons across development, saw them dance tightly and wrote a paper about it. It's so cool to see it online and we will make a thread about it all very soon. Stay tuned :-)
49443
Artem Ilin @adc34.bsky.social · 28/08/2026
Happy to share our new preprint on the discovery of the autonomous form of the D. melanogaster transposon previously known as Hopper. We characterize its distribution and related elements, including one homolog showing remarkably extensive horizontal spread across Drosophila species.
biorxiv.org
The Little Transib That Could — and Could Not: Contrasting Invasion Outcomes within a Novel DDE DNA Transposon Lineage
Transposable-element (TE) abundance can vary substantially among populations, yet population-specific differences in TE content remain incompletely characterized. Here, we compared known TE families a...
0143
Reposted by Artem Ilin
bioRxiv Genetics @biorxiv-genetic.bsky.social · 28/08/2026
Evolution of transposons as controlling elements www.biorxiv.org/content/10.64898/20…
0184
Reposted by Artem Ilin
Paul Gardner @ppgardne.bsky.social · 25/08/2026
It's increasingly apparent that lncRNAs have been over-called. It'll take a lot of hard graft to clear these annotations out: doi.org/10.1038/s414...
doi.org
LncRNA-LncDACH1 mediated phenotypic switching of smooth muscle cells during neointimal hyperplasia in male arteriovenous fistulas - Nature Communications
Arteriovenous fistulas are the most common vascular access points for hemodialysis, but they have a high incidence of postoperative dysfunction, mainly due to excessive neointimal hyperplasia. Here, t...
073
Artem Ilin @adc34.bsky.social · 21/08/2026
I seriously consider outlook to be malware. I've tried everything I could to remove its damn autocorrect, but it's impossible to stop it from messing my subject lines every single time🤬 I mean there's no freaking option to turn off the autocorrect for subject, it's always on!
120
Reposted by Artem Ilin
Arvid Ågren @arvidagren.bsky.social · 18/08/2026
New paper with Nick Davies and Kevin Foster in @natcomms.nature.com. We show that often neither selection against transposons’ deleterious effects nor exploitation by parasitic elements is sufficient to keep them in control. Only active host suppression does. www.nature.com/articles/s41...
07927
Reposted by Artem Ilin
Jack Bateman @jbateman01.bsky.social · 19/08/2026
Single-cell 3D genome imaging shows super-enhancer hubs are rare, nonspecific, and neither necessary nor sufficient for transcriptional bursting www.cell.com/cell-genomic...?
cell.com
Single-cell 3D genome imaging shows super-enhancer hubs are rare, nonspecific, and neither necessary nor sufficient for transcriptional bursting
Super-enhancers have been proposed to cluster in the nucleus when compared to other genomic elements. Le et al. found that super-enhancer clustering was rare and driven by non-specific interactions. P...
0116
Reposted by Artem Ilin
Vivien Horvath @vivienhorvath.bsky.social · 14/08/2026
📣We are recruiting a Postdoctoral Researcher to work on glia specific brain aging and the role of transposable elements in this process. If you are interested please feel free to reach out. You can learn more about our research at www.horvathlab.com. www.nature.com/naturecareer....
nature.com
Postdoctoral scholarship (2 years) within Bioinformatics - Umeå, Sweden job with Umeå University | 12862611
A postdoctoral scholarship within the project “Transposable elements and the aging human brain: Functional Insights and therapeutic opportunities”
0106
Reposted by Artem Ilin
Nikos Konstantinides @nkonst4.bsky.social · 14/08/2026
Calling the hive mind: Has anyone encountered an unusually high number of rDNA-associated reads in a 10x v4 scRNA-seq library? We have millions of reads mapping to Drosophila rDNA, multimapping/low MAPQ, with strong enrichment at specific rDNA regions. Curious if others have seen something similar!
044
Artem Ilin @adc34.bsky.social · 04/08/2026
I feel incredibly honored to have known Professor Gvozdev personally, and his passing was a tragedy. He retained his brilliant mind until the very end, and it was always a pleasure to talk with him about anything, whether science, culture, or politics.
010
Artem Ilin @adc34.bsky.social · 27/07/2026
To be fair, it could be both. The first ever paper about copia that I could find hints that it's from Latin, cause they found copia by analyzing clones that produce abundant RNAs and don't mention word copious anywhere, but it doesn't say so explicitly, unfortunately. pubmed.ncbi.nlm.nih.gov/98263/
pubmed.ncbi.nlm.nih.gov
Repeated gene families in Drosophila melanogaster - PubMed
Repeated gene families in Drosophila melanogaster
110
Artem Ilin @adc34.bsky.social · 21/07/2026
Why do I love doing the analysis but hate writing the Materials and Methods so much?🫩
020