Gavin Woodruff @weirdworms.bsky.social · 31/08/2026Transposable Elements and the Impact of Genomic Autoimmunity www.annualreviews.org/content/jour...annualreviews.orgTransposable Elements and the Impact of Genomic AutoimmunityTransposable elements (TEs), originally characterized in maize, are ubiquitous features of eukaryotes and replicate within genomes independent of the host replication cycle. This replicative advantage... 083
Gavin Woodruff @weirdworms.bsky.social · 31/08/2026Regulatory architecture controlling terminal differentiation of an interoceptive paraneuron in Caenorhabditis elegans journals.biologists.com/dev/article/...journals.biologists.comRegulatory architecture controlling terminal differentiation of an interoceptive paraneuron in Caenorhabditis elegansSummary: The similarity of the regulatory architecture of neurons and paraneurons revealed using cell identity markers to characterize the neuronal features of Caenorhabditis elegans uv1 paraneurons i... 000
Gavin Woodruff @weirdworms.bsky.social · 31/08/2026Breaching the Weismann Barrier – a role of vitellogenin yolk proteins in nematode non-Mendelian inheritance www.frontiersin.org/journals/eco...frontiersin.orgFrontiers | Breaching the Weismann Barrier – a role of vitellogenin yolk proteins in nematode non-Mendelian inheritanceAugust Weismann from Freiburg, Germany played an essential role in the general acceptance of Charles Darwin´s theory of evolution. He argued against the inhe... 001
Gavin Woodruff @weirdworms.bsky.social · 31/08/2026Genomic predisposition is associated with the direction of sex chromosome evolution www.science.org/doi/abs/10.1...science.orgGenomic predisposition is associated with the direction of sex chromosome evolutionSex chromosome evolution is among the most dynamic genomic innovations in vertebrates, yet why some lineages evolve XY while others evolve ZW remains unclear. Using chromosome-level genomes from 19 ge... 011
Gavin Woodruff @weirdworms.bsky.social · 31/08/2026 25 Years Since the First Microsporidian Genome Assembly, Insights on How Genomics Has Shaped Our Understanding of Parasites with the Smallest Eukaryotic Genomes www.annualreviews.org/content/jour...annualreviews.org25 Years Since the First Microsporidian Genome Assembly, Insights on How Genomics Has Shaped Our Understanding of Parasites with the Smallest Eukaryotic GenomesMicrosporidia are fungal intracellular parasites of animals and are a threat to human health and food security. In 2001, they became the first eukaryotic parasites to have their genome fully sequenced... 000
Gavin Woodruff @weirdworms.bsky.social · 31/08/2026The Caenorhabditis elegans microbiome impacts microsporidia infection through nutrient limitation and spore inactivation www.nature.com/articles/s41...nature.comThe Caenorhabditis elegans microbiome impacts microsporidia infection through nutrient limitation and spore inactivation - Nature CommunicationsHere, the authors show that gut bacteria can protect nematodes from microsporidia via altering host fatty acids the parasites need to grow, and secreting molecules that inactivate parasite spores, rev... 010
Reposted by Gavin WoodruffNature Communications @natcomms.nature.com · 02/08/2026#Adaptation is assumed to proceed by survival of the fittest. The study shows that #mutation bias can drive adaptation via survival of the likeliest, steering bacteria along divergent paths to resistance with major consequences for control strategies. www.nature.com/articles/s41...nature.comMutation-biased adaptation is consequential even in large bacterial populations - Nature CommunicationsAdaptation is assumed to proceed by survival of the fittest. The study shows that mutation bias can drive adaptation via survival of the likeliest, steering bacteria along divergent paths to resistanc... 0259
Reposted by Gavin WoodruffArvid Ågren @arvidagren.bsky.social · 24/08/2026From his review of John Dupre’s edited volume The Latest on the Best (MIT 1987). Krebs, J. 1988. Making the most of models. Nature 331, 126–127. doi.org/10.1038/3311...doi.orgMaking the most of models - NatureNature - Making the most of models 021
Gavin Woodruff @weirdworms.bsky.social · 23/08/2026Replicated evolution and environmental reversal reveal strong correlated response in a polyphenism doi.org/10.1093/evol...doi.orgReplicated evolution and environmental reversal reveal strong correlated response in a polyphenismAbstract. Environmental heterogeneity can favor phenotypic plasticity, but whether evolutionary responses in one environment predict trait expression after 001
Reposted by Gavin WoodruffTobias Warnecke @tobiaswarnecke.bsky.social · 22/08/2026Who needs chromatin anyway...? NOT THIS GUY! www.biorxiv.org/content/10.6... 1/nbiorxiv.orgChromatin is dispensable for bacterial lifeInside cells, DNA is intimately associated with proteins, forming chromatin. The protein constituents of chromatin vary across the tree of life: histones are the principal building blocks of chromatin... 3231104
Gavin Woodruff @weirdworms.bsky.social · 21/08/2026Species-specific barriers restrict virus spillover potential across the Caenorhabditis genus journals.plos.org/plosbiology/...journals.plos.orgSpecies-specific barriers restrict virus spillover potential across the Caenorhabditis genusWhy do most cross-species virus jumps fail? Using Orsay virus across multiple Caenorhabditis species, this study reveals how mismatches in replication, genome balance, and transmission create layered ... 031
Reposted by Gavin WoodruffArvid Ågren @arvidagren.bsky.social · 18/08/2026New paper with Nick Davies and Kevin Foster in @natcomms.nature.com. We show that often neither selection against transposons’ deleterious effects nor exploitation by parasitic elements is sufficient to keep them in control. Only active host suppression does. www.nature.com/articles/s41... 07927
Reposted by Gavin WoodruffEvolution Letters @evolletters.bsky.social · 10/08/2026Big evolutionary events can fool phylogenetic analyses. A new approach combines phylogenetic regression with eigenvectors to reduce false positives and better account for the history written in genomes. doi.org/10.1093/evle...doi.orgCharacterizing and mitigating confounding by unreplicated evolutionary events in phylogenetic regressionAbstract. When researchers want to test for a direct effect of one attribute on another using interspecific data, they need to account for the confounding 03519
Gavin Woodruff @weirdworms.bsky.social · 17/08/2026Ecologically relevant low oxygen levels reduce unfertilized oocyte output in Caenorhabditis elegans www.micropublication.org/journals/bio...micropublication.orgEcologically relevant low oxygen levels reduce unfertilized oocyte output in Caenorhabditis elegans | microPublication 031
Gavin Woodruff @weirdworms.bsky.social · 14/08/2026Population structure and punctuated genomic hyper-diversity in Caenorhabditis briggsae doi.org/10.1093/molb... 020
Reposted by Gavin WoodruffNeedhi Bhalla 💅🏽 @needhibhalla.bsky.social · 13/08/2026WOAH 👀🧪 "we show that eukaryotic chromosomes are ionic hydrogels and that the chromosomal material is a two-state system, with interconversion between condensed and decondensed states through a volume phase transition, analogous to a liquid-gas transition" www.science.org/doi/10.1126/...science.orgThe eukaryote chromosome, a two-state system with interconversion by a volume phase transitionThe formation of metaphase chromosomes requires the activity of condensins, DNA translocases that reduce chromosomal length through the process of loop extrusion. Reduction of length, however, does no... 23616
Gavin Woodruff @weirdworms.bsky.social · 10/08/2026Apical spectrin organizes cortical actin filament bundles to pattern C. elegans cuticle ridges journals.plos.org/plosgenetics...journals.plos.orgApical spectrin organizes cortical actin filament bundles to pattern C. elegans cuticle ridgesAuthor summary The external surfaces of many organisms are decorated with regularly spaced protruding structures such as hairs, bristles, scales, and ridges. These structures play important roles in s... 020
Gavin Woodruff @weirdworms.bsky.social · 10/08/2026The rights and wrongs of rescaling in population genetics simulations journals.plos.org/plosgenetics...journals.plos.orgThe rights and wrongs of rescaling in population genetics simulationsAuthor summary Large-scale datasets of multiple genome sequences from a single species are increasingly available. Computer simulations of complex population genetic models are essential for making se... 031
Reposted by Gavin WoodruffAdam Phillippy @aphillippy.bsky.social · 06/08/2026For the past 30 years, “whole-genome sequencing” has been a misnomer. Today the T2T Consortium publishes a dozen papers heralding a future of truly complete genomes for humans and nearly any vertebrate 👨🔬🐒🐦🐀🦒🐎🫏🐹🐟 (sorry, no salamanders): www.cell.com/consortium/t... 🧵[1/15] 3202106
Reposted by Gavin WoodruffCrystal Rogers, PhD @rogerslabucd.bsky.social · 03/08/2026Yay! Just saw that we got the cover of the August 1 MBoC! Woot! 🎉 Please check out our paper if you are interested in it the tubulin code or early development. www.molbiolcell.org/doi/10.1091/... 1513318
Reposted by Gavin WoodruffDr. Ahna Skop @ahnaskop.bsky.social · 04/08/2026Super excited my new review on midbody remnants (MBRs) is out: "Condensates on the Move: Midbody Remnants as Large, Translation‐Competent Extracellular Vesicles" #extracellularvesicles #midbody #mitosis #condensates #translation #proteinsynthesis onlinelibrary.wiley.com/doi/10.1002/...onlinelibrary.wiley.comCondensates on the Move: Midbody Remnants as Large, Translation‐Competent Extracellular VesiclesMitotic cells produce three EV types: exosomes and microvesicles (green/blue) delivering pre-formed molecules, and midbody remnants (magenta) containing functional ribosomes and translation machinery... 0143
Reposted by Gavin WoodruffC. Brandon Ogbunu @cbo.bsky.social · 04/08/2026🚨NEW PAPER 🚨 "Deconstructing empirical fitness seascapes across scales of granularity" published in #G3 (@genetics-gsa.bsky.social) 1/2 The fitness landscape has been among the most influential instruments in evolutionary theory for nearly a century. But we often treat them as fixed and static. 35126
Reposted by Gavin WoodruffKurianlab @kurianlab.bsky.social · 30/07/2026www.nature.com/articles/s41... how cool!nature.comIntestinal stem cells count self-renewal divisions to switch multipotency - NatureIn Drosophila, cell fate switching in adult intestinal stem cells is determined through an epigenetic mechanism in which these cells count divisions, switching from producing enterocytes to producing ... 0147
Reposted by Gavin WoodruffJeff Groh @jeffgroh.bsky.social · 28/07/2026Avocados come in 2 varieties - A-types start each day female and switch to male midday. B-types do the reverse. In work just published from the last chapter of my PhD, we show this system evolved 40+million yrs ago and is regulated by alleles of 1 transcription factor www.pnas.org/doi/10.1073/...pnas.orgBalanced polymorphism in a floral transcription factor underlies the ancient rhythm of daily sex alternation in avocado | PNASIn avocado and certain wild relatives in Lauraceae, a highly synchronized daily rhythm of floral sex timing promotes cross-pollination between two ... 22721274
Gavin Woodruff @weirdworms.bsky.social · 13/07/2026A Fluorescent Dauer Marker in Caenorhabditis inopinata Enables Comparative Analysis of Dauer-Inducing Mechanisms www.biorxiv.org/content/10.6...biorxiv.orgA Fluorescent Dauer Marker in Caenorhabditis inopinata Enables Comparative Analysis of Dauer-Inducing MechanismsDauer larvae are a dormant developmental stage in nematodes that is induced by a range of environmental cues. The molecular mechanisms that transduce these cues to regulate dauer entry have been well ... 020
Reposted by Gavin WoodruffNicholas Bellono @nbellono.bsky.social · 09/07/2026How did octopuses evolve novel traits? Rishav Mitra, Richard Han, Trey Scott, et al serendipitously discover a unique ribosome adaptation that increases the accuracy of protein synthesis and evolved alongside their elaborate nervous systems vs deep sea relatives. www.biorxiv.org/content/10.6... 18740
Gavin Woodruff @weirdworms.bsky.social · 03/07/2026Caenorhabditis becei recombinant inbred lines (beRILs) reveal the scope of heritable variation within a gonochoristic nematode population www.biorxiv.org/content/10.6...biorxiv.orgCaenorhabditis becei recombinant inbred lines (beRILs) reveal the scope of heritable variation within a gonochoristic nematode populationCaenorhabditis nematodes are a powerful model clade for evolutionary genetics. Isogenic lines and panels of recombinant inbred lines (RILs) are among the most essential tools for genetic studies in th... 020
Reposted by Gavin WoodruffChris Bertram @crookedfootball.bsky.social · 02/07/2026Reading Runciman’s sneery review of one of the best books I’ve read in the past few years has further lowered my opinion of Runcimanlrb.co.ukDavid Runciman · Trivial Pursuits: GamificationWhat makes a game liberating to play is also what makes it stifling and oppressive: in both cases it’s because the... 061
Reposted by Gavin WoodruffMax Heiman @heiman.bsky.social · 01/07/2026Clever approach from @astavoe.bsky.social for those pesky lines that were integrated with Rol -- edit them back to nonRol! I wonder what else we could build from all the existing integrated arrays. Switch colors? 083
Reposted by Gavin WoodruffOscar @oscarw.bsky.social · 16/06/2026Just came across this remarkable interview with Marjorie Grene at age 94: www.thebeliever.net/an-interview... Two of my favourite bits, when Grene is asked about Rorty and about Lakatos: Rorty is just witty, but doesn't have a philosophy and Grene is quick to say that she did not kill Lakatos! 4316
Reposted by Gavin WoodruffCharlotte Fare @charlottefare.bsky.social · 29/06/2026mRNA-Scaffolded Cytoplasmic Compartments www.annualreviews.org/content/jour...annualreviews.orgmRNA-Scaffolded Cytoplasmic CompartmentsThe cytoplasm of vertebrate cells is compartmentalized into the cytosol and several messenger RNA (mRNA)-scaffolded condensates, present at steady-state conditions and in the absence of stress. They i... 073
Gavin Woodruff @weirdworms.bsky.social · 26/06/2026Caenorhabditis tropicalis followed a unique evolutionary path to self-fertility doi.org/10.1093/gene...doi.orgCaenorhabditis tropicalis followed a unique evolutionary path to self-fertilityAbstract. Caenorhabditis nematodes provide three natural experiments in which a male/female species evolved to produce one with males and self-fertile herm 070
Reposted by Gavin WoodruffJeremy Yoder says no war @jbyoder.org · 21/06/2026Shubin closes with a reminder of the vital importance of shared evolutionary history in basic biomedical research: we’re learning how to cure human disease thanks to work on fruit flies, worms, and even fish 1177
Reposted by Gavin WoodruffDr. Jessica L Ware @jessicalwarelab.bsky.social · 21/06/2026Excellent welcoming squad for the #Evolution meeting!! Five stars! ⭐️ 1403
Reposted by Gavin WoodruffLuane Landau @lulandau.bsky.social · 21/06/2026I think this was one of the best talks I’ve heard! Evolution 2026 starting amazingly! @neilshubin.bsky.social #Evolution2026 093
Reposted by Gavin WoodruffMarco Fumasoni @marcofumasoni.bsky.social · 19/06/2026Our paper on the evolution of cellular miniaturization is now out in PNAS! www.pnas.org/doi/10.1073/... A short recap 🧵pnas.orgPNASProceedings of the National Academy of Sciences (PNAS), a peer reviewed journal of the National Academy of Sciences (NAS) - an authoritative source of high-impact, original research that broadly spans... 24520
Gavin Woodruff @weirdworms.bsky.social · 19/06/2026! "Moreover, transphyletic transplantation experiments show that the blastopore lip of M. leidyi leads to the generation of a secondary body axis in embryos of the cnidarian Nematostella vectensis." 010
Reposted by Gavin WoodruffLaurie Belcher @lauriebelch.bsky.social · 09/06/2026The new OrthoFinder paper is out now! In this new work, we introduce major advances in accuracy and scalability, allowing analysis on much larger datasets www.nature.com/articles/s41... github.com/OrthoFinder/...nature.comOrthoFinder: improved phylogenetic orthology inference with enhanced accuracy and scalability - Nature MethodsThe updated OrthoFinder v3 software boosts accuracy and scalability in phylogenetic orthology inference with massive and diverse datasets. 111158
Reposted by Gavin WoodruffGenome Biology and Evolution @genomebiolevol.bsky.social · 08/06/2026Brault et al. propose guidelines for standardized π estimation, systematic reporting of summary statistics, and the adoption of richer metadata to ensure that population genomic data remain comparable and reusable across a wide range of systems. 🔗 doi.org/10.1093/gbe/... #genome #evolution 12214
Reposted by Gavin WoodruffJohn Stinchcombe @johnstinchcombe.bsky.social · 07/06/2026Why are leaves the shape that they are? What controls intraspecific, genetic variation in leaf shape? New from my lab, in collaboration with many others, led by PhD student Amanda Peake: mapping the leaf shape polymorphism in Ipomoea hederacea. 38333
Reposted by Gavin WoodruffJosé Cerca @naturalselection.bsky.social · 02/06/2026🧨 New publication out (I think this one is 🌶️ ): Cerca & @stelkens.bsky.social - "The identity crisis of speciation genomics". academic.oup.com/evolinnean/a... 13917
Reposted by Gavin WoodruffLuca Soldini @lucasoldini.bsky.social · 26/05/2026How do alternative reproductive modes arise? In this @pnas.org paper, we show that hybridogenesis -where a haploid set of chromosomes is transmitted clonally across generations- acted as an intermediate step between sexual and asexual reproduction in stick insects. doi.org/10.1073/pnas...doi.orgPNASProceedings of the National Academy of Sciences (PNAS), a peer reviewed journal of the National Academy of Sciences (NAS) - an authoritative source of high-impact, original research that broadly spans... 173
Reposted by Gavin WoodruffEvolution Letters @evolletters.bsky.social · 25/05/2026How predictable is evolution? Replicated C. elegans experiments show environmental differences and population bottlenecks jointly shape the repeatability of adaptation doi.org/10.1093/evle... Image credit: Wikimedia 03713
Gavin Woodruff @weirdworms.bsky.social · 17/05/2026Comparative transcriptomics reveals an extracellular worm Argonaute as an ancestral regulator of LTR retrotransposons academic.oup.com/gbe/advance-...academic.oup.comComparative transcriptomics reveals an extracellular worm Argonaute as an ancestral regulator of LTR retrotransposonsAbstract. Safeguarding the genome from non-self elements is essential for development, reproduction, and ageing. One of the major threats to genomic integr 076
Reposted by Gavin WoodruffJoanna Masel @joannamasel.bsky.social · 16/05/2026Our paper unpacking "fitness" is out doi.org/10.1093/gene.... How to define fitness depends on what question you ask. Selection acts on organismal vital rates, longer-term outcomes make sense for genetic lineages, models link them. "Invasion fitness" = speed, but sometimes probability matters more.doi.orgWhy there are so many definitions of fitness in modelsAbstract. Evolutionary “fitness” is operationalized in many different ways in models. Its role is to quantify that which is favored by natural selection. G 26430
Gavin Woodruff @weirdworms.bsky.social · 15/05/2026😀 Actually, what is a gain-of-function mutation? doi.org/10.1093/gene...doi.orgActually, what is a gain-of-function mutation?Abstract. For more than a century, scientists have worked to characterize, understand, and predict the consequences of mutations. For almost as long, scien 074
Reposted by Gavin WoodruffJordan Theriault-Brown @jtheriault.bsky.social · 14/05/2026Put simply: It coordinates action in more varied and context-dependent ways across more complex environments, AND it regulates a more complex internal environment. Highly recommend this chapter from Sterling and Laughlin! link.springer.com/article/10.1...link.springer.comWhy an animal needs a brain - Animal CognitionIn Principles of Neural Design (2015, MIT Press), inspired by Charles Darwin, Sterling and Laughlin undertook the unfashionable task of distilling principles from facts in the technique-driven, data-s... 1157