iiinova — where your digital self keeps evolving

genscaleteam.bsky.social

@genscaleteam.bsky.social

Reposted by @genscaleteam.bsky.social

Rayan Chikhi @rayanchikhi.bsky.social · 03/09/2025

🌎👩‍🔬 For 15+ years biology has accumulated petabytes (million gigabytes) of🧬DNA sequencing data🧬 from the far reaches of our planet.🦠🍄🌵 Logan now democratizes efficient access to the world’s most comprehensive genetics dataset. Free and open. doi.org/10.1101/2024...

3218118

Reposted by @genscaleteam.bsky.social

Pierre Peterlongo @pierrepeterlongo.bsky.social · 27/05/2025

📜 Excited to share insights from our recent paper: "Kaminari: a resource-frugal index for approximate colored k-mer queries". The study aims to efficiently identify documents containing a query string, focusing on DNA strings. www.biorxiv.org/content/10.1... 🧬 🖥️ 1/8

12516

Reposted by @genscaleteam.bsky.social

Pierre Peterlongo @pierrepeterlongo.bsky.social · 30/01/2025

Today I wanted to know the number of unique 27-mers in the hg38 human genome (spoiler there are 2.49 billion). I found no tool for doing this. So I wrote that github.com/pierrepeterl... It may help. Please use it / improve it. 🧬💻 #bioinformatics

github.com

GitHub - pierrepeterlongo/unique_kmer_counter: Count number of unique kmers from fasta or fasta.gz files

Count number of unique kmers from fasta or fasta.gz files - pierrepeterlongo/unique_kmer_counter

3163

Reposted by @genscaleteam.bsky.social

Pierre Peterlongo @pierrepeterlongo.bsky.social · 12/12/2024

🚨🚨🚨 We are hiring 🚨🚨🚨 After the creation of logan-search (see: bsky.app/profile/pier...) we propose a 2-years engineer position for continuing the development and optimizations. With @rayanchikhi.bsky.social and @tlemane.bsky.social Details + applications: recrutement.inria.fr/public/class...

11214

Reposted by @genscaleteam.bsky.social

Pierre Peterlongo @pierrepeterlongo.bsky.social · 11/11/2024

🧬🔍There are 50 petabases of freely-available DNA sequencing data. We introducing Logan Search which allows you to search for any DNA sequence in minutes, bringing Earth’s largest genomic resource to your fingertips. 🏔️ logan-search.org 🏔️ #Genomics #Bioinformatics #OpenScience

211156