iiinova — where your digital self keeps evolving

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Michael Alaux @michaelalaux.bsky.social · 15/09/2026

I am delighted to celebrate 15 years of the Wheat Initiative! Proud to have been involved from the start alongside Hélène Lucas, Hadi Quesneville, and many outstanding scientists from INRAE and around the world. @wheatinitiative.bsky.social @inrae-france.bsky.social @urgi-inrae.bsky.social

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Johann Confais @johannconfais.bsky.social · 07/09/2026

📢 We (@clementgoubert.bsky.social @ritarebollo.bsky.social) are happy to share our new mini-review: “Computational Tools and Lessons Learned from Annotating Transposable Elements in Insect Genomes” doi.org/10.1016/j.co... #TransposableElements #TEannotation #InsectGenomics #Bioinformatics #TEsky 🧵👇

doi.org

Redirecting

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Mariène Wan @marienewan.bsky.social · 02/07/2026

Anne‑Françoise Adam-Blondon a présenté aujourd’hui RDMkit lors du mini‑symposium “Orchestrating data flows throughout their lifecycle” #JOBIM2026. Une belle mise en lumière des outils et bonnes pratiques pour gérer les flux de données. @urgi-inrae.bsky.social @bioinfomics.bsky.social #ELIXIREurope

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Mariène Wan @marienewan.bsky.social · 01/07/2026

Aujourd'hui à la session posters de #JOBIM2026, venez échanger avec Étienne Bardet autour de son poster #40 : "RO-Crate as a metadata source for the FAIDARE global federation"

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Mariène Wan @marienewan.bsky.social · 30/06/2026

Venez rencontrer Mohamad Yassine à son poster #88 aujourd'hui et demain à #JOBIM2026 sur PASTEC, un outil incroyable pour classifier les éléments transposables 👍

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Johann Confais @johannconfais.bsky.social · 25/06/2026

Excellent news! Open data is fundamental to moving the entire community forward!

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Johann Confais @johannconfais.bsky.social · 28/06/2026

Here we go for #SMBE2026 Are there any TE folks here? #transposon #TEsky

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Johann Confais @johannconfais.bsky.social · 30/06/2026

Let s dive into the world of holocentric chromosomes with @amarques.bsky.social Wonderful talk ! #smbe2026

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Mariène Wan @marienewan.bsky.social · 23/06/2026

Au jdev 2026 à Montpellier 🌞 belle opportunité d'apprendre et de faire de la veille de techno 💻🤓

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URGI @urgi-inrae.bsky.social · 21/02/2026

Un nouvel outil disponible à l'URGI qui vient compléter la suite logicielle #REPET pour les analyses de la dynamique des éléments transposables dans les génomes.

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Johann Confais @johannconfais.bsky.social · 16/02/2026

🚨📢📄 Article in press in Genome Biology doi.org/10.1186/s130... We introduce panREPET, a reference-free pipeline to detect shared transposable element (TE) insertions across pangenomes and retrace their evolutionary dynamics #TEsky 🧵👇

doi.org

A reference-free pipeline for detecting shared transposable elements from pan-genomes to retrace their dynamics in a species - Genome Biology

Background The role of transposable elements (TEs) in host adaptation has gained interest in recent years. Individuals of the same species undergo independent TE insertions, providing genetic variabil...

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Johann Confais @johannconfais.bsky.social · 12/02/2026

Merci aux organisateurs du STBDE de @upecofficiel.bsky.social de nous avoir convié à cet événement festif et convivial !

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URGI @urgi-inrae.bsky.social · 05/12/2025

Everything you always wanted to know about TE classification ! @nico971.bsky.social and @johannconfais.bsky.social present RepetDB a TE database to support your science at GDR #MobilET meeting.

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URGI @urgi-inrae.bsky.social · 20/11/2025

Nous proposons un protocole de soumission de données aux archives EMBL-EBI. Vous pouvez visionner un webinaire à ce sujet ici www.youtube.com/watch?v=zezQ...

youtube.com

Webinaire 2025 Soumission aux archives EMBL-EBI

YouTube video by UR Genomics-Info

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URGI @urgi-inrae.bsky.social · 18/11/2025

We have made two WheatIS videos available based on feedback from experiences with LLMs. You can access here www.youtube.com/watch?v=kEHc... and here www.youtube.com/watch?v=4imk...

youtube.com

WheatIS sharing experiences on LLM part1

YouTube video by UR Genomics-Info

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URGI @urgi-inrae.bsky.social · 19/09/2025

We have made public the data from WP2 of the BreedWheat project. You can find this resources here wheat-urgi.versailles.inrae.fr/Projects/Bre... with the label WP2. You can find phenotyping data, genotyping data and association data.

wheat-urgi.versailles.inrae.fr

BreedWheat - WHEAT URGI

Content Management System

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Mariène Wan @marienewan.bsky.social · 10/07/2025

Venez me voir au poster 2, pour découvrir l'URGI, une plateforme bio-informatique @urgi-inrae.bsky.social @jobim2025.bsky.social #JOBIM2025 #URGI #INRAE

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Mariène Wan @marienewan.bsky.social · 10/07/2025

Venez découvrir #REPET, un outil de détection, de classification et d'annotation d'éléments transposables en live avec Etienne Bardet en amphi E @jobim2025.bsky.social @urgi-inrae.bsky.social #JOBIM2025 #URGI #INRAE

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Johann Confais @johannconfais.bsky.social · 10/07/2025

Vous êtes à #JOBIM2025 et vous avez manquez le poster de @marienewan.bsky.social sur la nouvelle version de #REPET ? Rassurez vous une demo est organisé aujourd'hui à midi en amphi E. Vous découvrirez toutes les évolutions mises en place pour vous faciliter l'annotation des #transposons

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URGI @urgi-inrae.bsky.social · 24/06/2025

ELIXIR has released a position paper on open biodata, more information here elixir-europe.org/news/positio... or here www.linkedin.com/posts/elixir...

elixir-europe.org

ELIXIR position paper on securing open biodata resources for European competitiveness | ELIXIR

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URGI @urgi-inrae.bsky.social · 11/04/2025

Check this interview wheatgenome.org/people/leade... on IWGSC website from our Deputy Director at URGI @michaelalaux.bsky.social. His thoughts on Wheat Genomics and bioinformatics on the last few years and for the future.

wheatgenome.org

Michael Alaux

Michael Alaux is the Deputy Director of URGI (Unit Resources Genomics-Info) at the French National Research Institute for Agriculture, Food, and Environment (IN...

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Clément Goubert @clementgoubert.bsky.social · 14/01/2025

The great @johannconfais.bsky.social on a reference-free approach (panREPET) to annotate #Transposons in #pangenomes 🧬

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URGI @urgi-inrae.bsky.social · 14/01/2025

Great presentation from @johannconfais.bsky.social at #PAG2025 #PAG32 on the first result obtained with panREPET tool a non reference centric approach

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Johann Confais @johannconfais.bsky.social · 13/01/2025

REPET got a complete overhaul in version 4.0 ! Etienne Bardet from @urgi-inrae.bsky.social presents the updates in #PAG32 forgemia.inra.fr/urgi-anagen/...

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Johann Confais @johannconfais.bsky.social · 13/01/2025

Great tall from @clementgoubert.bsky.social to present GraffiTE: a pipline that finds polymorphic TE in genomes #PAG32 github.com/cgroza/Graff...

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URGI @urgi-inrae.bsky.social · 13/01/2025

Vanita Haurheeram will be present at #PAG2025 to introduce URGI service to FAIR research data management. Template, guidelines, repositories, data portals tool, come see her at POSTER80

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URGI @urgi-inrae.bsky.social · 13/01/2025

Maud Marty will be present at #PAG2025 to introduce forest tree data in FAIDARE, a plant data discovery portal. You want to discover the forest tree data generated by the french community, let her guide you through the ecosystem

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Nicolas Francillonne @nico971.bsky.social · 12/01/2025

@johannconfais.bsky.social and @clementgoubert.bsky.social are presenting @tehub.bsky.social at #PAG2025, an amazing resource and driven community for anyone interested in transposable element

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Clément Goubert @clementgoubert.bsky.social · 10/01/2025

#PAG32 I'd bet that every genome studied at PAG has a least 1 #Transposon, if not thousands! Find us on Sunday for an exciting session on #mobileDNA!

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URGI @urgi-inrae.bsky.social · 12/01/2025

Great presentation from Michael Alaux in #BrAPI session #PAG2025, how the french community use BrAPI to share data between several tools

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URGI @urgi-inrae.bsky.social · 06/01/2025

URGI will be present at PAG 2025. We will talked about pangenomics, annotation tools, Data exchange and findability using BrAPI, Data management services, Forest tree data management, check the details here urgi.versailles.inrae.fr/About-us/New...

urgi.versailles.inrae.fr

PAG 32 - URGI

Content Management System

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Nicolas Francillonne @nico971.bsky.social · 11/07/2024

C'est le moment de faire le bilan de ces 2 jours et de tracer la feuille de route pour l année à venir #BReIF #AgroDiv AgroBRC_RARe INRAE_URGI #France2030 Florilege, OLGA, IFB_Bioinfo @inrae-france.bsky.social #INRAE_DPT_BAP #INRAE_DPT_GA #INRAE_TOULOUSE

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Nicolas Francillonne @nico971.bsky.social · 10/07/2024

C est parti pour l AG #PEPR à Toulouse pour les projets #AgroDiv et #BReIF. Ce 10 et 11 juillet, nous allons partager et discuter des avancées des projets #France2030 AgroBRC_RARe Florilege, IFB_Bioinfo @inrae-france.bsky.social INRAE_DPT_BAP INRAE_DPT_GA

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Nicolas Francillonne @nico971.bsky.social · 04/07/2024

Et c est reparti, 2e journée de l atelier pangénomique @inrae-france.bsky.social à Versailles du SaPI PanAnnot #CATI_GREP #CATI_BARIC @johannconfais.bsky.social On discute des outils de pangénomique et de leur impact sur nos thématiques de travail.

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Nicolas Francillonne @nico971.bsky.social · 20/04/2024

#ICTE2024 is starting #TEworldwide, INRAE-URGI is here with @johannconfais.bsky.social Somia Saidi, Héléna Vassilieff and Etienne Bardet, come see our posters and discuss

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Johann Confais @johannconfais.bsky.social · 23/02/2024

📢 #hiringalert #JobOpening #Concours Rejoignez-nous en tant qu'ingénieur développeur de pipeline d'analyse et #DevOps @INRAE_URGI sur Versailles ou Toulouse. Plus d'info sur urgi.versailles.inrae.fr/About-us/News/… @inrae-france.bsky.social

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Nicolas Francillonne @nico971.bsky.social · 21/02/2024

📣 #hiringalert #JobOpening #Concours Rejoignez-nous en tant qu'ingénieur développeur de pipeline d'analyse et #DevOps @INRAE_URGI sur Versailles ou Toulouse. Plus d'info sur urgi.versailles.inrae.fr/About-us/New... @INRAE_DPT_BAP @INRAE_France @INRAE_IDF @INRAE_TLSE @BIOINFOMICS @IFB_Bioinfo

urgi.versailles.inrae.fr

Poste IE - URGI

Content Management System

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