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Johann Confais @johannconfais.bsky.social · 12/02/2026

Merci aux organisateurs du STBDE de @upecofficiel.bsky.social de nous avoir convié à cet événement festif et convivial !

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Johann Confais @johannconfais.bsky.social · 16/02/2026

✨ Take-home message: panREPET provides a robust and scalable framework to study TE evolutionary dynamics at the species level—without a reference genome.

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Johann Confais @johannconfais.bsky.social · 16/02/2026

⏳ By combining pangenomics with SNP-based genetic distances, we date major waves of TE activity: ❄️ ~22 kya (Last Glacial Maximum) 🌍 ~10 kya (Holocene) 👉 suggesting a link between climatic stress and TE mobilization

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Johann Confais @johannconfais.bsky.social · 16/02/2026

🚨📢📄 Article in press in Genome Biology doi.org/10.1186/s130... We introduce panREPET, a reference-free pipeline to detect shared transposable element (TE) insertions across pangenomes and retrace their evolutionary dynamics #TEsky 🧵👇

doi.org

A reference-free pipeline for detecting shared transposable elements from pan-genomes to retrace their dynamics in a species - Genome Biology

Background The role of transposable elements (TEs) in host adaptation has gained interest in recent years. Individuals of the same species undergo independent TE insertions, providing genetic variabil...

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URGI @urgi-inrae.bsky.social · 12/02/2026

@johannconfais.bsky.social de @urgi-inrae.bsky.social et @hquesneville.bsky.social de @inrae-dipso.bsky.social ont représenté le stand @inrae-france.bsky.social lors de la nuit des chercheurs.euses @upecofficiel.bsky.social sciences-tech.u-pec.fr/la-faculte/a...

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hquesneville.bsky.social @hquesneville.bsky.social · 24/01/2025

Je viens de faire mon #eXit! L’exode de X est massif. Ne perdez pas un seul de vos abonnés. Grâce à #HelloQuitX j’ai inscrit 1052 nouveaux passagers pour partir vers #BlueSky & #Mastodon. Retrouvez automatiquement vos communautés le #20Janvier via app.helloquitx.com !

app.helloquitx.com

HelloQuitteX

Libérez vos espaces numériques

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hquesneville.bsky.social @hquesneville.bsky.social · 24/01/2025

app.helloquitx.com

HelloQuitteX

Libérez vos espaces numériques

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URGI @urgi-inrae.bsky.social · 06/01/2025

URGI will be present at PAG 2025. We will talked about pangenomics, annotation tools, Data exchange and findability using BrAPI, Data management services, Forest tree data management, check the details here urgi.versailles.inrae.fr/About-us/New...

urgi.versailles.inrae.fr

PAG 32 - URGI

Content Management System

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URGI @urgi-inrae.bsky.social · 13/01/2025

Maud Marty will be present at #PAG2025 to introduce forest tree data in FAIDARE, a plant data discovery portal. You want to discover the forest tree data generated by the french community, let her guide you through the ecosystem

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URGI @urgi-inrae.bsky.social · 13/01/2025

Vanita Haurheeram will be present at #PAG2025 to introduce URGI service to FAIR research data management. Template, guidelines, repositories, data portals tool, come see her at POSTER80

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Johann Confais @johannconfais.bsky.social · 13/01/2025

Great tall from @clementgoubert.bsky.social to present GraffiTE: a pipline that finds polymorphic TE in genomes #PAG32 github.com/cgroza/Graff...

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Nicolas Francillonne @nico971.bsky.social · 12/01/2025

After @tehub.bsky.social satellite workshop at #ICTE2024 and the creation of a working group on benchmark, what about the next step ? A manual curation workshop ? Share your thougth with the TEhub

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Johann Confais @johannconfais.bsky.social · 13/01/2025

REPET got a complete overhaul in version 4.0 ! Etienne Bardet from @urgi-inrae.bsky.social presents the updates in #PAG32 forgemia.inra.fr/urgi-anagen/...

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Nicolas Francillonne @nico971.bsky.social · 12/01/2025

@johannconfais.bsky.social and @clementgoubert.bsky.social are presenting @tehub.bsky.social at #PAG2025, an amazing resource and driven community for anyone interested in transposable element

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URGI @urgi-inrae.bsky.social · 12/01/2025

Great presentation from Michael Alaux in #BrAPI session #PAG2025, how the french community use BrAPI to share data between several tools

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Johann Confais @johannconfais.bsky.social · 11/01/2025

Amazing talk of @nico971.bsky.social from @urgi-inrae.bsky.social on RepetDB #PAG32 urgi.versailles.inra.fr/repetdb/begi...

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Nicolas Francillonne @nico971.bsky.social · 20/04/2024

#ICTE2024 is starting #TEworldwide, INRAE-URGI is here with @johannconfais.bsky.social Somia Saidi, Héléna Vassilieff and Etienne Bardet, come see our posters and discuss

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Clément Goubert @clementgoubert.bsky.social · 24/04/2024

#TEhub workshop on #benchmark starts with a full room listening to the wisdom of @hquesneville and Arian Smit on the considerations, pitfalls and ways to assess #Transposons annotation. Soon on our YouTube channel! #TEsky

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Rita Rebollo @ritarebollo.bsky.social · 07/02/2024

Only one more week to register and submit an abstract to #ICTE2024 (February 15th). There will be no extensions! The abstract submission process can be so 😱 please take your time to go through all the cases to fill. There are 22 slots for speakers. Be on time, and come showcase your research!

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