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Toby Hodges

@tobyhodges.carpentries.org
365 followers 347 following 261 posts

he/him Director of Curriculum at The Carpentries. Views my own. Sorry I haven't replied to your email. "I only know that hearts made of stone will rarely sail far and may never reach home" - Chuck Ragan

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Reposted by Toby Hodges
Elly "Enormity" Bangs @ellybangs.bsky.social · 25/09/2026
Is it weird how saying sentences backwards creates backwards sentences saying how weird it is?
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Daniel S. Katz @danielskatz.org · 18/09/2026
Today I'm starting as the new Editor-in-Chief of @joss-openjournals.bsky.social. blog.joss.theoj.org/2026/09/dani... I can only do this because of the journal's incredible community and the work we've collectively done over our first 10 years. 🧵
blog.joss.theoj.org
Daniel S. Katz is the new Editor-in-Chief of JOSS | Journal of Open Source Software Blog
After ten years, founding Editor-in-Chief Arfon Smith is handing over to Daniel S. Katz, effective 18 September 2026.
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Josephus Brown @josephusbrown.myatproto.social · 16/09/2026
we'd better do what he says, he's a whale biologist.
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WHAT A FUCKING RECORD @whatafuckingrecord.bsky.social · 16/09/2026
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ENDTRODUCING DJ SHADOW
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Wolfgang Huber @wkhuber.bsky.social · 16/09/2026
A commentary on "Training as infrastructure for biological data science in wartime Ukraine" doi.org/10.1038/s415... (Nat. Genet.)
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The Carpentries @carpentries.carpentries.org · 15/09/2026
Science Summit is a hybrid event running 14–30 Sep across New York and Nairobi, bringing together voices on regeneration, equity, and global governance under the theme "From Boundaries to Breakthroughs." Read more here: event.sciencesummitnyc.org/list-of-sess...
event.sciencesummitnyc.org
SCIENCE SUMMIT NEW YORK CITY
Join global science and innovation leaders at the Science Summit in New York City. Submit your session, connect with peers, and contribute to sustainable development goals through science.
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The Carpentries @carpentries.carpentries.org · 15/09/2026
🎙️ We are Excited to share that our Associate Director of Community, @angeliquetrusler.carpentries.org will be speaking at Science Summit 2026! 📅 Sep 18, 2026 | 10:00–11:45am PST 🌍 Virtual — Youth & Education Track 🔬 Session: Building Global Student Research Capacity Through Open Science Networks
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Bork Group at EMBL Heidelberg @borklab.bsky.social · 01/09/2026
We've been very moved by the tributes paid to Peer at conferences around the world: e.g. at ISME by Jeroen Raes, at ECCB by Christian von Mering, and at the Tara conference by Chris Bowler. Thank you! @isme-microbes.bsky.social @eccb-europe.bsky.social @taraoceans-science.bsky.social @raeslab.org
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Institute for Research Software @softwaresaved.bsky.social · 01/09/2026
⬡ Today, we become the Institute for Research Software. For 15 years, we've worked as the Software Sustainability Institute to make research software more sustainable and properly recognised.
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Open Science Hardware Foundation @opensciencehw.bsky.social · 27/08/2026
💡Interested in #OpenSource and #OpenScience? Join this in-person Library Carpentries workshop on #OpenScienceHardware #OScH led by our Board Member Pen-Yuan Hsing 🗓️24 September 2026 📍Berlin, Germany ✏️More info & registration: events.tu-berlin.de/en/events/01...
events.tu-berlin.de
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Toby Hodges @tobyhodges.carpentries.org · 27/08/2026
I will be so sorry to see @drkariljordan.carpentries.org @erinstellabecker.bsky.social and the other members of the team go. I can't express how grateful I am for everything they have done for the @carpentries.carpentries.org community and for me personally.
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Toby Hodges @tobyhodges.carpentries.org · 27/08/2026
This was a difficult blog post to write, but an important one. With the impending reduction in Core Team capacity, we had to make tough decisions about what work we put down. [1/4]
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Wolfgang Huber @wkhuber.bsky.social · 24/08/2026
I wrote up a short blog post about this year's Ukrainian Biological Data Science Summer School, which took place over two weeks in July: www.huber.embl.de/group/posts/... @mikelove.bsky.social @helucro.bsky.social @ladaisa.bsky.social
huber.embl.de
Ukrainian Biological Data Science Summer School 2026 – Huber Group @ EMBL
Uzhhorod, 11 - 25 July 2026: the fourth edition
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The Carpentries @carpentries.carpentries.org · 24/08/2026
The Carpentries Board of Directors have approved the following resolution: Strategic Renewal of The Carpentries Curriculum Portfolio: carpentries.org/blog/2026/08... The resolution is to ensure that The Carpentries' curriculum portfolio meets our strategic aims and current and future learner needs.
carpentries.org
Strategic Renewal of The Carpentries Curriculum Portfolio
The Carpentries’ mission is to empower a diverse global community by equipping individuals with essential data and computational skills. Core to achieving this mission is our lesson programs. Our curr...
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Dr. Kari L. Jordan @handle.invalid · 19/08/2026
I am so grateful for the trust this community has placed in me and for everything I've learned working alongside all of you. I have confidence in the Core Team and Board of Directors who will carry The Carpentries forward, and I wish our community every success as you shape what comes next.
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The Carpentries @carpentries.carpentries.org · 19/08/2026
The Carpentries Executive Director @drkariljordan.carpentries.org and Associate Director @erinstellabecker.bsky.social will step down on 1 September 2026. Dr. SherAaron Hurt will serve as Interim Executive Director for a 6-month term from 2 Sept. Full announcement: carpentries.org/blog/2026/08...
carpentries.org
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Toby Hodges @tobyhodges.carpentries.org · 19/08/2026
Welp looks like it's time to make space on the office wall for another Dinosaur Comics.
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Toby Hodges @tobyhodges.carpentries.org · 14/08/2026
Phoebe Bridgers album release day 🎉 "The past is looking brighter all the time"
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Toby Hodges @tobyhodges.carpentries.org · 13/08/2026
Interesting article, about a huge threat to one of the greatest sources of joy in my life. www.theguardian.com/music/ng-int... But I also laughed at this example of 'person doesn't understand how probabilities work'
Highlighted excerpt from the article. 'Treblo co-founder Ryan Tremblay confirmed to the Guardian that the classifier returns a very high probability score ("higher by far than any false positive")'
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Stephen Turner @stephenturner.us · 12/08/2026
Codon usage bias for prose blog.stephenturner.us/p/codon-usag... Anthropic is now watermarking Claude's output. The mechanism is statistical (not lexical) and a detection hit doesn't mean what I think most people will assume.
blog.stephenturner.us
Codon usage bias for prose
Anthropic is now watermarking Claude's output. The mechanism is statistical (not lexical) and a detection hit doesn't mean what most people will assume.
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Institute for Research Software @softwaresaved.bsky.social · 10/08/2026
🧭 Applications for the 2027 round of the SSI Fellowship Programme are now open! Find out all about it, the dates, and the support available at www.software.ac.uk/news/ssi-fel...
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twistopherrobin.bsky.social @twistopherrobin.bsky.social · 07/08/2026
#Art #StreetArt #Brazil uses real #Trees
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Toby Hodges @tobyhodges.carpentries.org · 07/08/2026
Today's purchases: 1. The Menzingers - Everything I Ever Saw 2. Phoebe Bridgers - Lost Weekend pre-order 3. IDLES - Crawler 4. Din of Celestial Birds - Takeoffs & Landings 5. Nomeansno - The Worldhood of the World (As Such) Should have bought Crawler years ago. Glad I've finally got around to it.
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Bandcamp @bandcamp.com · 04/08/2026
This Friday, August 7, is Bandcamp Friday! From midnight to midnight Pacific Time, we’ll waive our revenue share and pass the funds directly to artists and labels. What will you be adding to your collection? bit.ly/4wEWMVT
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Endless Screaming @infinitescream.bsky.social · 04/08/2026
AAAAAAAAAAAAAAAAAHHHHHHH
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Toby Hodges @tobyhodges.carpentries.org · 24/07/2026
Can you strain your memory one more time?
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Toby Hodges @tobyhodges.carpentries.org · 20/07/2026
Partially dislocated my shoulder near the end of my vacation last week, triggering an impromptu reprioritisation of my work. I don't expect to get a lot done while my right arm is in a sling, but I am enjoying the opportunity to learn my way around the voice control features of my laptop.
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Institute for Research Software @softwaresaved.bsky.social · 30/06/2026
🖥️ In response to the growing number of reports about the use of generative AI chatbots by learners at workshops, The Carpentries has launched a bonus module in which instructors will explore what widespread genAI use means for the way they teach. Find out more at www.software.ac.uk/news/genai-w...
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Philipp Bayer @philippbayer.bsky.social · 30/06/2026
This, so much. As long as 'number of papers published' is the single metric by which careers stand and fall, people will game the system. Nobody in power wants to change the system, instead it's piecemeal 'solution' after 'solution' ('AI to find cheaters!') instead of thinking about the incentive.
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Endless Screaming @infinitescream.bsky.social · 25/06/2026
AAAAAAAHHHHHHHHHH
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Luna Fazio @lunafazio.bsky.social · 23/06/2026
It was my turn on the I4R blog this week. It mostly consists of links to things other people have said and it's not very long. That was a deliberate and surprisingly excruciating choice to commit to. www.i4replication.org/blog/the-con...
i4replication.org
The conversation we all seem to be having right now | I4R
A brief collection of perspectives on knowledge work and 'AI'
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Toby Hodges @tobyhodges.carpentries.org · 19/06/2026
Thread of several new things from @carpentries.carpentries.org this week, all related to genAI. 1. We have launched a bonus module to Instructor Training, GenAI in Workshops. carpentries.org/blog/2026/06...
The Carpentries GenAI in Workshops: empowering instructors to engage with learners about AI chatbot use in workshops. 
Impacts of the training:
Understanding genAI's impact: recognise the challenges and opportunities genAI presents to learners.
Facilitating meaningful conversations: engage learners in open, critical discussions about genAI chatbot use.
Support genAI-informed learners: apply effective strategies to maximise learning in the presence of AI tools.

Target audience: the one-day bonus module is designed for certified carpentries instructors and anyone who has completed the Carpentries' Learner-Centered Teaching program, and who are noticing AI chatbot tools such as ChatGPT, Clause, and Gemini appear in their workshops and classrooms.
Through hands-on exercises and expert-led discussions grounded in the foundational principles of Instructor Training, participants leave with practical strategies to maximise learning and confidently guide novice learners in a genAI-present classroom.
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The Carpentries @carpentries.carpentries.org · 18/06/2026
📢 In response to growing reports of genAI chatbot use by learners in workshops, 𝐓𝐡𝐞 𝐂𝐚𝐫𝐩𝐞𝐧𝐭𝐫𝐢𝐞𝐬 𝐢𝐬 𝐥𝐚𝐮𝐧𝐜𝐡𝐢𝐧𝐠 𝐆𝐞𝐧𝐀𝐈 𝐢𝐧 𝐖𝐨𝐫𝐤𝐬𝐡𝐨𝐩𝐬, 𝐚 𝐛𝐨𝐧𝐮𝐬 𝐦𝐨𝐝𝐮𝐥𝐞 𝐭𝐨 𝐈𝐧𝐬𝐭𝐫𝐮𝐜𝐭𝐨𝐫 𝐓𝐫𝐚𝐢𝐧𝐢𝐧𝐠, in which Instructors will explore what widespread genAI use means for the way they teach workshops: carpentries.org/blog/2026/06...
carpentries.org
GenAI in Workshops: A Bonus Module to Instructor Training
The Carpentries is excited to launch a new bonus module to Instructor Training, GenAI in Workshops, designed to empower Instructors to account for learners’ use of generative AI chatbot tools in their...
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Toby Hodges @tobyhodges.carpentries.org · 19/06/2026
Thread of several new things from @carpentries.carpentries.org this week, all related to genAI. 1. We have launched a bonus module to Instructor Training, GenAI in Workshops. carpentries.org/blog/2026/06...
The Carpentries GenAI in Workshops: empowering instructors to engage with learners about AI chatbot use in workshops. 
Impacts of the training:
Understanding genAI's impact: recognise the challenges and opportunities genAI presents to learners.
Facilitating meaningful conversations: engage learners in open, critical discussions about genAI chatbot use.
Support genAI-informed learners: apply effective strategies to maximise learning in the presence of AI tools.

Target audience: the one-day bonus module is designed for certified carpentries instructors and anyone who has completed the Carpentries' Learner-Centered Teaching program, and who are noticing AI chatbot tools such as ChatGPT, Clause, and Gemini appear in their workshops and classrooms.
Through hands-on exercises and expert-led discussions grounded in the foundational principles of Instructor Training, participants leave with practical strategies to maximise learning and confidently guide novice learners in a genAI-present classroom.
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Paolo Crosetto @paolocrosetto.bsky.social · 19/06/2026
I will be teaching an intro to #Rstat course this coming Fall term. And I wonder: should I? And if so, how? Can we still teach the commands/workflows the old way? How do you teach statistical coding when LLMs can and will code for you? I'm open to any suggestion #Science #Teaching #AI
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Dreadnought Holiday @dreadships.bsky.social · 11/06/2026
I don't follow basketball but it's incredibly funny watching Americans discover the adjective "spursy" in real time
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Laura Howes @laurahowes.bsky.social · 11/06/2026
It is infuriating to me that energy efficiency has become a party political football in Germany. In an alternative universe, a pro business and innovation CDU would position Germany to benefit from an energy transition that is already happening. Instead, we have this ideological mess.
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Toby Hodges @tobyhodges.carpentries.org · 09/06/2026
I was honoured and slightly intimidated to appear as a panelist at the #LifeScienceTrainers community call about GenAI and Professional Development last week, expertly facilitated by @jasonwilliamsny.bsky.social youtu.be/KJWJbkfqgSY?...
youtu.be
Panel discussion: AI and Short-Format Professional Development — What We Know and Don’t Know
YouTube video by LifeSciTrainers
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The Carpentries @carpentries.carpentries.org · 04/06/2026
The Carpentries in collaboration with AI Carpentry will host the first set of discussions in a series of 𝐆𝐞𝐧𝐀𝐈 + 𝐓𝐞𝐚𝐜𝐡𝐢𝐧𝐠 𝐂𝐨𝐦𝐦𝐮𝐧𝐢𝐭𝐲 𝐃𝐢𝐬𝐜𝐮𝐬𝐬𝐢𝐨𝐧𝐬 on 18 June, at 12:00 UTC and 19:00 UTC. Register below: Session 1: pretix.carpentries.org/community-ev... Session 2: pretix.carpentries.org/community-ev...
GenAI + Teaching Discussion Session 18 June 2026 12:00 UTC & 19:00 UTC Hosted by AI Carpentry and The Carpentries
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Toby Hodges @tobyhodges.carpentries.org · 29/05/2026
Just registered for #RSECon26 & #IRSC26 in Sheffield 🕺🎉
static.klipy.com
The Full Monty Stripping
Alt: A clip from the final strip dance of the 1997 movie, The Full Monty
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UNITED24 Media @united24media.com · 29/05/2026
🚨 BREAKING: Russian drone hits apartment building in Romania. A Russian Geran-2 drone crashed into an apartment block in Galați, Romania, early on May 29, injuring two people while Romanian F-16s were monitoring the area during an air alert.
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Daniel S. Katz @danielskatz.org · 28/05/2026
In March, @arfon.bsky.social, Michelle Barker, Kim Hartley, and I co-organized a workshop, "Research Software Engineering in the Age of Generative AI: Building a Community Vision," in Edinburgh. (1/4)
doi.org
Research Software Engineering in the Age of Generative AI: Building a Community Vision
The Research Software Engineering in the Age of Generative AI: Building a Community Vision workshop, held in March in Edinburgh, UK, brought together participants to explore how Generative AI may resh...
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Toby Hodges @tobyhodges.carpentries.org · 22/05/2026
Theo Walcott has grey hairs in his beard. I am so old.
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Eric Ravenscraft @lordravenscraft.bsky.social · 14/05/2026
still not quite over the fact that i watched 15 year olds get sued for millions of dollars for downloading twelve songs and now we all have to accept AI slop because every tech company in the known universe decided that IP laws don't exist now that they're inconvenient for them
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anil oza @aniloza.bsky.social · 14/05/2026
wow — the preprint host, arxiv, is banning authors for a year if they submit papers with hallucinated citations 🤖
Twitter thread from Thomas Dietterich, reading "Attention 
@arxiv
 authors: Our Code of Conduct states that by signing your name as an author of a paper, each author takes full responsibility for all its contents, irrespective of how the contents were generated. 1/
3:03 PM · May 14, 2026
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Thomas G. Dietterich
@tdietterich
·
1h
If generative AI tools generate inappropriate language, plagiarized content, biased content, errors, mistakes, incorrect references, or misleading content, and that output is included in scientific works, it is the responsibility of the author(s). 2/
Thomas G. Dietterich
@tdietterich
·
1h
We have recently clarified our penalties for this. If a submission contains incontrovertible evidence that the authors did not check the results of LLM generation, this means we can't trust anything in the paper. 3/
Thomas G. Dietterich
@tdietterich
·
1h
The penalty is a 1-year ban from arXiv followed by the requirement that subsequent arXiv submissions must first be accepted at a reputable peer-reviewed venue. 4/
Thomas G. Dietterich
@tdietterich
·
1h
Examples of incontrovertible evidence: hallucinated references, meta-comments from the LLM ("here is a 200 word summary; would you like me to make any changes?"; "the data in this table is illustrative, fill it in with the real numbers from your experiments") end/"
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Bérénice Batut @bebatut.bsky.social · 13/05/2026
I'm thrilled to co-organize and teach at the first-ever training event focused on advanced Galaxy features: workflows, API, and more! Registration is now open until June 5, so don’t miss your chance to dive deep into these powerful tools.
training.galaxyproject.org
Galaxy Beyond Basics: Mastering Workflows, Automation, and Scalability
Join us for an **intensive, week-long, in-person training** designed to elevate your Galaxy expertise to new heights. This workshop is tailored for **data scientists, advanced Galaxy users, and team l...
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Mark Copelovitch @mcopelov.bsky.social · 12/05/2026
Even if you were sincere about wanting the ideal version of the academy to be “Oxford tutorials for all” - which you’re not, let’s admit it - that model would need to start with introductory level material. You don’t get to “edges” & running without knowing how to walk. What are we doing here? 🤷‍♂️
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Arfon Smith @arfon.bsky.social · 05/05/2026
After 10 years, I'm stepping down as Editor-in-Chief of @joss-openjournals.bsky.social. A few thoughts on the decade: www.arfon.org/stepping-dow... The EiC call: blog.joss.theoj.org/2026/05/call... #opensource #openscience
arfon.org
Stepping down as Editor-in-Chief of JOSS | Arfon Smith
After 10 years, reflecting on launching the Journal of Open Source Software and what comes next.
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Toby Hodges @tobyhodges.carpentries.org · 28/04/2026
teh
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