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Miss Salmonella

@misssalmonella.bsky.social
2.3K followers 1.9K following 151 posts

María de Toro. Bioinformatician. Sequencing Microbial genomes 🧬. Manager of a Genomics & Bioinformatics Core Facility #NoSciNoFuture #OneHealth🌏 #FoodSafety #Bioinformatics #MGEs #plasmids ❗️Only science

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Miss Salmonella @misssalmonella.bsky.social · 14/09/2026
I have an email alert for the word #plasmid. Yes, I'm that person. Today it brought me a paper comparing bacterial plasmids with #ecDNA in cancer (same tricks, different kingdoms). "A paper a day keeps ignorance away" 👇 www.nature.com/articles/s41...
nature.com
The shared evolutionary capacities of plasmids and extrachromosomal DNA - Nature Reviews Genetics
Plasmids in bacteria and extrachromosomal DNA in cancer both generate copy-number variation, alter gene expression and promote rapid adaptation. In this Perspective, Shaw and Henssen explore their sha...
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Miss Salmonella @misssalmonella.bsky.social · 10/09/2026
I love benchmarking papers because they involve a huge amount of comparative work behind the scenes, the kind of work we need to understand which tool is best suited to a specific analysis. Here is a great example applied to one of the fundamental steps in bacterial genomics: genome annotation.
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Lorena Pérez Hernández @lorenaph.bsky.social · 22/07/2026
Escuchar, hablar, reflexionar sobre el impacto social de la investigación. Construir el futuro que queremos. Eso es lo que hicimos ayer en #EspacioOdisea con @salbaco.bsky.social @hebusto.bsky.social @misssalmonella.bsky.social @fedefedeson.bsky.social y muchos más. #UniversidadComprometida
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TB_UITB & fuiTB @tb-uitb.bsky.social · 08/04/2026
XVI JORNADAS DE ENFERMEDADES EMERGENTES, 8 y 9 de junio. 👉 Programa e inscripciones: www.uitb.cat/event/xvi-jo... #EnfEmerg XVI JORNADES DE MALALTIES EMERGENTS, 8 i 9 de juny
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Zamin Iqbal @zaminiqbal.bsky.social · 20/03/2026
Madness. A bacterium with a 10kb genome, lost replication initiation, translation.., relies on symbiotic host. www.nature.com/articles/s41...
nature.com
Convergent extreme reductive evolution in ancient planthopper symbioses - Nature Communications
Symbiotic bacteria can have exceedingly small genomes. This study finds that ancient bacterial symbionts of planthoppers have repeatedly evolved the smallest known genomes, losing most biosynthetic fu...
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Zamin Iqbal @zaminiqbal.bsky.social · 26/02/2026
Courtesy of @martibartfast.bsky.social , we have a new release of AllTheBacteria which adds another 322,920 assemblies, covering all ENA (illumina, isolate) prokaryotes to May 2025. allthebacteria.readthedocs.io/en/latest/ov...
allthebacteria.readthedocs.io
Overview — AllTheBacteria documentation
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Zamin Iqbal @zaminiqbal.bsky.social · 19/02/2026
Last year, we proposed a model of plasmid evolution via fusion and fragmentation (via mge mediated recombination) generating mosaics, by studying historical isolates. Excited to see a MASSIVE paper from @jrpenades.bsky.social , @epcrocha.bsky.social expanding on this www.biorxiv.org/content/10.6...
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Jonathan Coxhead @4130chromo.bsky.social · 24/01/2026
Genome Science UK 2026 - SAVE THE DATE 📅 Manchester 14th-16th September 🧬🧬 #Genomics
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Miss Salmonella @misssalmonella.bsky.social · 16/01/2026
“What is true for E. coli is also true for the elephant.” — Jacques Monod, quoted in the latest highlight by @relenski.bsky.social. A line we all love if we’ve worked (or still work) in bacterial evolution. It’s Friday… have fun 🧬
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Diario Veterinario @diarioveterinario.com · 25/10/2025
La Región de Murcia ha dado un paso adelante en la gestión de emergencias al incorporar de forma oficial a los #veterinarios voluntarios en los planes de protección civil
mlibr.es
Murcia incorpora a los veterinarios voluntarios en casos de emergencias de protección civil
El Gobierno de la Región de Murcia y el Colegio Oficial de Veterinarios colaborarán para integrar la participación voluntaria del colectivo en situaciones de emergencias de protección civil ...
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ace-gtdb.bsky.social @ace-gtdb.bsky.social · 22/10/2025
Our @narjournal.bsky.social manuscript is out! It explores the growth of the GTDB (gtdb.ecogenomic.org) since its inception, as well as updates to the website, methodology, policies, and major taxonomic and nomenclatural changes over the past three years. academic.oup.com/nar/advance-...
academic.oup.com
GTDB release 10: a complete and systematic taxonomy for 715 230 bacterial and 17 245 archaeal genomes
Abstract. The Genome Taxonomy Database (GTDB; https://gtdb.ecogenomic.org) provides a phylogenetically consistent and rank normalized genome-based taxonomy
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Jose Manuel Redondo López @theroundedman.bsky.social · 23/10/2025
Por qué creo que es tan grave lo de los historiales de Andalucía? Porque atenta contra la confianza básica en las instituciones, poniendo en duda sus cimientos. Mañana alguien puede borrar mi enfermedad por lo que sea. O inventarse una nueva y "filtrarla" para perjudicarme. O cambiar datos
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The Conversation ES @es.theconversation.com · 23/10/2025
Los cultivos de frutos secos generan grandes cantidades de residuos que pueden ser aprovechados para desarrollar materiales sostenibles con múltiples aplicaciones.
theconversation.com
Residuos agrícolas como solución verde: cáscaras de pistacho, almendra y nuez para capturar CO₂
Los cultivos de frutos secos, cada más extendidos a escala global, generan grandes cantidades de residuos que pueden ser aprovechados para desarrollar materiales sostenibles con múltiples aplicaciones
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Lorena Fernández Álvarez @loretahur.bsky.social · 22/10/2025
Mañana Mary-Claire King recibirá premio Princesa de Asturias. Donará el importe a una organización médica palestina 👏👏 Publicó el artículo que identificaba el gen del cáncer de mama. Trabajó con las Abuelas de la Plaza de Mayo usando ADN para identificar a niñas/os robados durante la dictadura.
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Cameron Thrash @jcamthrash.bsky.social · 23/10/2025
GTDB release 10: a complete and systematic taxonomy for 715 230 bacterial and 17 245 archaeal genomes academic.oup.com/nar/advance-... #jcampubs
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Miss Salmonella @misssalmonella.bsky.social · 20/10/2025
Preocupante lo que está pasando en el #NIH y que impacta en nuestro trabajo diario con las bases de datos de NCBI, SRA, GEO… Hora de reevaluar nuestros procesos y de planificar un sistema más resiliente ante cambios externos y que nada tienen que ver con la ciencia y la #Bioinfo
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Miss Salmonella @misssalmonella.bsky.social · 15/10/2025
Do we see the same respiratory microbiome with #Illumina and #Nanopore? Macip et al. (2025, Sci Rep) show we don’t — Illumina captures higher richness, Nanopore better species resolution. Perhaps the future is an hybrid approach? #metataxonomy doi.org/10.1038/s415...
doi.org
Comparative analysis of illumina and oxford nanopore sequencing platforms for 16S rRNA profiling of respiratory microbial communities - Scientific Reports
Scientific Reports - Comparative analysis of illumina and oxford nanopore sequencing platforms for 16S rRNA profiling of respiratory microbial communities
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Miss Salmonella @misssalmonella.bsky.social · 15/10/2025
How does the sequencing technology we choose shape what we see in a microbiome? Hu et al. (2025, AEM) show that Illumina, 16S, and Nanopore tell different microbial stories — from native taxa to ARGs and pathogens #Microbiome #AMR 🔗 doi.org/10.1128/aem....
doi.org
How sequencing technology shapes our understanding of river water microbiomes and resistomes: a comparative study | Applied and Environmental Microbiology
Accurate characterization of microbial communities and their functional traits, such as antibiotic resistance, is essential for evaluating water quality and associated public health risks. However, th...
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Miss Salmonella @misssalmonella.bsky.social · 15/10/2025
🧬 What if #plasmids weren’t competitors, but cooperators? A new study in npj Antimicrobials & Resistance shows that many plasmids coexist within the same bacterium — and that non-resistant ones survive thanks to those carrying #AMR genes. #AMR #Plasmids #OneHealth 🔗 doi.org/10.1038/s442...
doi.org
Communities of plasmids as strategies for antimicrobial resistance gene survival in wastewater treatment plant effluent - npj Antimicrobials and Resistance
npj Antimicrobials and Resistance - Communities of plasmids as strategies for antimicrobial resistance gene survival in wastewater treatment plant effluent
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Daniel Padfield @padpadpadpad.bsky.social · 16/09/2025
I have an MRC-funded PhD project available (www.exeter.ac.uk/study/fundin...) on how warming will change the problem of AMR. Join a small and friendly group (padpadpadpad.netlify.app/about) in (sometimes) sunny Cornwall. 🧪🦠 #microsky Please share the ad below with anyone who may be interested.
A teal flyer for a PhD opportunity to investigate how warming may change antimicrobial resistance. The project will use experiments on Klebsiella bacteria to answer questions about how temperature affects their response to antibiotics, plasmid transfer, and fitness costs. The research involves microbiology lab work, bioinformatics, and mathematical modeling. The flyer includes contact details for Dr. Daniel Padfield and the logos of the sponsoring institutions.
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Miss Salmonella @misssalmonella.bsky.social · 26/09/2025
Capturing 100 years of antibiotic resistance evolution www.ebi.ac.uk/about/news/r...
ebi.ac.uk
Capturing 100 years of antibiotic resistance evolution
Researchers dive into the pre-antibiotic history of bacterial plasmids to understand the spread of treatment-resistant infections worldwide.
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Miss Salmonella @misssalmonella.bsky.social · 11/09/2025
🚧 “Closed for training” this week — learning to fly our new PromethION P2i @nanoporetech.com 🧬🚀 Metagenomes, big genomes, epigenetics, transcriptomics… here we come! We generate data. We analyze data. We generate knowledge. 💥
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European Centre for Disease Prevention and Control @ecdc.europa.eu · 10/09/2025
📢 Join us for the next ECDC Lighthouse webinar “The public as partners: unlocking the potential of citizen science in disease prevention and control”. What happens when science opens its doors to the public? 🗓️ Monday 22/09/2025 🕕 13.00-14.00 CET 💻 Online #ECDCLighthouse
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Lluis Montoliu @lluismontoliu.bsky.social · 07/09/2025
Alucino escuchando a @perestupinya.bsky.social en @avivirser.bsky.social anunciando la cancelación de El cazador de cerebros y @orbitalaika.bsky.social en @rtvecom.bsky.social cuya nueva dirección no parece tener interés en que la sociedad sepa de ciencia de forma cercana/rigurosa. Un despropósito.
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Miss Salmonella @misssalmonella.bsky.social · 04/09/2025
New record set! Scientists have sequenced the oldest host-associated microbial DNA ever found, from mammoths. This groundbreaking work opens the door for deeper study of the bacterial communities that existed over a million years ago. #AncientDNA #NGS www.sciencedirect.com/science/arti...
sciencedirect.com
Ancient host-associated microbes obtained from mammoth remains
Ancient genomic studies have extensively explored human-microbial interactions, yet research on non-human animals remains limited. In this study, we a…
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Lucy van Dorp @lucyvandorp.bsky.social · 01/09/2025
Excited to say we’re hiring 😊. We’re looking for a post-doc in ancient pathogen genomics to join our friendly supportive team in London at @ugiatucl.bsky.social. Start date January 2026. www.ucl.ac.uk/work-at-ucl/...
ucl.ac.uk
UCL – University College London
UCL is consistently ranked as one of the top ten universities in the world (QS World University Rankings 2010-2022) and is No.2 in the UK for research power (Research Excellence Framework 2021).
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Demetre Daskalakis @drdemetre.bsky.social · 28/08/2025
Enough is enough. The health of the country is in danger. Read our resignation letters: insidemedicine.substack.com/p/breaking-n...
insidemedicine.substack.com
Breaking News: Read three top CDC officials' resignation emails.
The end of an era.
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Nature Reviews Genetics @natrevgenet.nature.com · 21/07/2025
New online! Viromics approaches for the study of viral diversity and ecology in microbiomes
nature.com
Viromics approaches for the study of viral diversity and ecology in microbiomes
Nature Reviews Genetics, Published online: 21 July 2025; doi:10.1038/s41576-025-00871-wIn this Review, Roux and Coclet outline current viromics approaches and discuss how they have contributed to our growing understanding of viral genomic diversity, focusing on uncultivated viruses of microorganisms.
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Tuuli Lappalainen @tuuliel.bsky.social · 19/08/2025
A postdoc position in genomics available at our infrastructure in Uppsala, Sweden! An interesting R&D role a bit outside the traditional academic environment, great colleagues, work at the forefront of (long-read) sequencing. www.uu.se/en/about-uu/...
uu.se
Postdoctoral position - Uppsala University
Postdoctoral position, Department of Immunology, Genetics and Pathology, Uppsala University
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Miss Salmonella @misssalmonella.bsky.social · 21/08/2025
To truly understand health in a global sense, we need to integrate #genomics with #exposome. This recent paper highlights how this integrated vision can drive a more realistic #PrecisionMedicine. The future of precision health will be genomic… but also environmental. www.nature.com/articles/s41...
nature.com
Integrating the genome and exposome for precision health in Kuwait - Nature Reviews Genetics
Extreme environmental conditions create stressors that can interact with genetic risk factors to influence health outcomes. In this Comment, the authors discuss their vision for a national programme i...
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Miss Salmonella @misssalmonella.bsky.social · 16/06/2025
Great news for those of us using #ONT for #bacterial genome reconstruction and epidemiological surveillance! According to these authors, we now have sufficient quality to achieve the reproducibility and accuracy required for effective bacterial surveillance. #genomicepidemiology
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Federico Castillo Álvarez @fedefedeson.bsky.social · 24/04/2025
Ayer fue el día del libro. Lo celebro con esta modesta aportación en forma de opúsculo sobre salud cerebral. Orgulloso de compartir autoría con @memarzo.bsky.social, prologo Raúl Juárez y portada de un excelso ilustrador, @difol.bsky.social Espero lo disfrutéis www.researchgate.net/publication/...
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Miss Salmonella @misssalmonella.bsky.social · 20/04/2025
Discrepancies in IncF plasmid subtyping? A study on >70,000 E. coli genomes found 8% showed pMLST issues: multiple replicons, overlaps, inconsistent calls. 3rd gen sequencing proves essential to fully resolve these mobile genetic elements. #Plasmids #AMR pubmed.ncbi.nlm.nih.gov/40197103/
pubmed.ncbi.nlm.nih.gov
The presence of multiple variants of IncF plasmid alleles in a single genome sequence can hinder accurate replicon sequence typing using in silico pMLST tools - PubMed
Plasmid sequence type is crucial for describing IncF plasmids due to their capacity to carry important antibiotic and virulence gene cargo and consequently due to their association with disease-causin...
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Miss Salmonella @misssalmonella.bsky.social · 18/04/2025
Amazing initiative! One step forward, UK 🇬🇧 decides to launch a surveillance program from the #metagenomics perspective. Please remember: metatax is not metagenomics!! www.thelancet.com/journals/lan...
thelancet.com
UK launch metagenomic pathogen surveillance programme
On Jan 30, 2025, the UK Health Security Agency (UKHSA) announced the launch of the metagenomics Surveillance Collaboration and Analysis Programme (mSCAPE)—the world’s first biosecurity surveillance sy...
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Miss Salmonella @misssalmonella.bsky.social · 04/04/2025
What sequencing options do we have in #NGS? Well, with a bit of data mining and by updating and adapting some great charts from fellow colleagues...
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Miss Salmonella @misssalmonella.bsky.social · 24/03/2025
La noticia del día. La bancarrota de la empresa 23&me pone en peligro los datos genómicos de 15M de personas. www.eldiario.es/tecnologia/e...
eldiario.es
La empresa de análisis genéticos 23andMe se declara en quiebra y pone en duda los datos de ADN de 15 millones de personas
La compañía busca comprador para sus activos, entre ellos las bases de datos con información genética de sus clientes
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Lluis Montoliu @lluismontoliu.bsky.social · 24/03/2025
La empresa #23andme dedicada a los analísis genéticos directos al consumidor ha quebrado y ha solicitado la declaración de bancarrota. Se estima que tiene los datos genómicos de más de 15 millones de personas, mayoritariamente norteamericanos. Via @eldiario.es t.co/NV9c7dEmfB
t.co
https://www.eldiario.es/tecnologia/empresa-analisis-geneticos-23andme-declara-quiebra-pone-duda-datos-adn-15-millones-personas_1_12157940.html
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The Wall Street Journal @wsj.com · 11/03/2025
The Trump administration has terminated $800 million in grants to Johns Hopkins University, spurring the nation’s top spender on research and development to plan layoffs and cancel health projects
wsj.com
Johns Hopkins Plans Staff Layoffs After $800 Million Grant Cuts
Local and international health research efforts are already winding down as the university braces for even more potential cuts.
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kinesinmotors.bsky.social @kinesinmotors.bsky.social · 11/03/2025
NIH Funding / Month for Mar 2024 - Mar 2025 🧪 usaspending.gov Sharp decline from Mar 2024 ($319M) to Mar 2025 ($24M)
Plot of NIH funding per month from Mar 2024 - Mar 2025 (total = $5.92B). Data from USASpending.gov for NIH awards to higher education institutions and individuals.
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Miss Salmonella @misssalmonella.bsky.social · 10/03/2025
Interactive tool to track #AMR trends in #Salmonella, #Ecoli, and #Campylobacter across Europe (2022-2023) developed by @efsa.europa.eu 🔗 multimedia.efsa.europa.eu/dataviz-2023... #AMR #FoodSafety #EFSA #OneHealth #DataViz
multimedia.efsa.europa.eu
Antimicrobial resistance in Europe
Resistance of Salmonella and E. coli in food, animals and humans. Explore data country by country.
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Miss Salmonella @misssalmonella.bsky.social · 06/03/2025
El @iatacsic.bsky.social organiza junto con la red #OneHealth4Food el Workshop "Ensuring Food Safety in a Changing World: Challenges and Strategies", centrado en la #Seguridad alimentaria. 📍IATA-Valencia 🗓️ 9/04/2025 📄 saco.csic.es/s/rr2jXjpPWA... 🔗 saco.csic.es/apps/forms/s...
saco.csic.es
PDF
SACO - Servicio de Almacenamiento Compartido de la Organización - SGAI - CSIC
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Miss Salmonella @misssalmonella.bsky.social · 05/03/2025
The European Union summary report on antimicrobial resistance #AMR in #zoonotic and indicator #bacteria from humans, animals and food in 2022–2023. Joint @efsa.europa.eu & @ecdc.europa.eu report. #OneHealth www.ecdc.europa.eu/en/publicati... www.ecdc.europa.eu/en/news-even...
ecdc.europa.eu
The European Union summary report on antimicrobial resistance in zoonotic and indicator bacteria from humans, animals and food in 2022–2023
This report presents the main findings of the 2022–2023 harmonised antimicrobial resistance (AMR) monitoring in Salmonella spp., Campylobacter jejuni and Campylobacter coli from humans and food-produc...
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Zamin Iqbal @zaminiqbal.bsky.social · 24/02/2025
Roche's SBX sequencing by expansion - preprint out! www.biorxiv.org/content/10.1...
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Miss Salmonella @misssalmonella.bsky.social · 25/02/2025
Amazing news on single molecule sequencing tech!!!! Developed by #Roche Sequencing by Expansion (SBX) — a novel, high-throughput single-molecule sequencing technology ‼️https://lnkd.in/dYjhzx9P ‼️https://lnkd.in/dDhdtHAW ‼️ lnkd.in/dj-tq2xj
lnkd.in
LinkedIn
This link will take you to a page that’s not on LinkedIn
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Mujeres con ciencia @mujeresconciencia.com · 25/02/2025
Mary Beard escribió: «si las mujeres no están en las estructuras de poder, lo que tenemos que redefinir es el poder, no a las mujeres».  mujeresconciencia.com/2025/02/25/wi…
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Stephen Turner @stephenturner.us · 25/02/2025
Applying the FAIR Principles to computational workflows www.nature.com/articles/s41597-025-… 🧬🖥️🧪 Nextflow = batteries included 🔋
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Miss Salmonella @misssalmonella.bsky.social · 25/02/2025
The success of genomics has relied on open data-sharing practices since the Human Genome Project. But as research evolves, are we at risk of losing this collaborative mindset?
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Miss Salmonella @misssalmonella.bsky.social · 14/02/2025
Amazing day in Zaragoza with Universidad San Jorge, reconnecting with brilliant bioinformaticians! Talks on oncology, paleogenomics, AI, and the role of bioinfo platforms. Big thanks for having me and for spreading the love for our field! #Bioinformatics #Science
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Federico Castillo Álvarez @fedefedeson.bsky.social · 09/02/2025
el ictus en España es: —😡1ª causa de muerte en mujeres, 2ª en global —😡1ª causa de discapacidad en adultos —😡2ª causa de demencias Minimizar sus consecuencias requiere un tratamiento urgente, que va mejor cuanto antes se inicia. Aprende a reconocerlo Ayúdanos a ayudarte
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Miss Salmonella @misssalmonella.bsky.social · 06/02/2025
10 days of Trump’s administration create chaos in the country, making the USA currently the enemy of global public health. www.nature.com/articles/d41...
nature.com
‘It is chaos’: US funding freezes are endangering global health
Abrupt changes to programmes including USAID inhibit global efforts to stop disease such as HIV, malaria and more, say researchers.
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