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Respiratory Microbiomes

@resp-micro.bsky.social
264 followers 273 following 51 posts

We are a respiratory microbiome research group at the University of Birmingham in the Department of Microbes, Infection and Microbiomes. Run by Dr Mike Cox 🏳️‍🌈. Lab website is here www.lungmicrobiome.org

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Cameron Thrash @jcamthrash.bsky.social · 02/06/2026
Taxonomic profilers and their influence on metagenomic diversity analyses www.biorxiv.org/content/10.6... #jcampubs
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Respiratory Microbiomes @resp-micro.bsky.social · 19/05/2026
Question: anyone struggle with Streptococcus pneumoniae growth in plasticware? Eliminated almost every other variable and it's lovely in glass but terrible in polystyrene plates. Anyone observed, got a mechanism or a fix? Driving us potty!
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Respiratory Microbiomes @resp-micro.bsky.social · 18/05/2026
Chatted to Dr Sheena Fraser about the respiratory microbiome for the Microbiome Medics podcast recently, available here podcasts.apple.com/gb/podcast/b... and here microbiomemedics.captivate.fm/listen for other flavours of listening.
podcasts.apple.com
Beyond the Gut: The Surprising Science of Respiratory Microbes with Dr. Michael Cox
Podcast Episode · Microbiome Medics · 13 May · 1hr 1min
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Freya Harrison @friendlymicrobe.bsky.social · 20/04/2026
My super department @warwicklifesci.bsky.social is hiring 6 assistant profs in the wake of recent retirements. We're looking for people in microbiology/infection, cellular disease / immunity; environmental biology; and plant/crop science. #MicroSky warwick-careers.tal.net/vx/lang-en-G...
warwick-careers.tal.net
Assistant Professor x6 (111522-0426) - University of Warwick
Title: Assistant Professor x6 (111522-0426). Application Deadline: . Position Type: Permanent
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Willem van Schaik @wvschaik.bsky.social · 16/04/2026
Livestream of peregrine falcons nesting at the top of Old Joe @unibirmingham.bsky.social launches www.birmingham.ac.uk/news/2026/wa...
birmingham.ac.uk
Livestream of peregrine falcons nesting at top of Old Joe - University of Birmingham
A livestream will show the nesting pair of peregrine falcons who have made their home at the University of Birmingham campus.
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Pride in STEM @prideinstem.bsky.social · 02/04/2026
Pride in STEM is 10 this month, and we are so proud to celebrate these 10 change-makers who were proposed and voted in by the community. Read about their work, their impact, and their commitment to improving the lives of LGBTQIA+ people in STEM and beyond, here: prideinstem.org/2026/04/01/t...
An image showing a mosaic of the 10 winners of our awards.
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Respiratory Microbiomes @resp-micro.bsky.social · 30/03/2026
Here we go then, lab website at last! Still some gaps to fill and I've definitely not caught all the broken links yet but here we are. www.lungmicrobiome.org Hellow world!
lungmicrobiome.org
Respiratory Microbiome Group — University of Birmingham
Investigating the role of microbial communities in respiratory health and disease.
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Charlotte Houldcroft @virologyhouldcroft.bsky.social · 23/02/2026
Help me out #MicroSky - what are your favourite microbial/viral genetics practical classes for undergraduates that can be run across just two sessions?
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Respiratory Microbiomes @resp-micro.bsky.social · 19/02/2026
New pre-print from the group with our immunology friends! @kylie.belchamber.com led this study of frailty in older people. Our contribution was looking at the respiratory microbiome in younger, healthy older people and frail older people. www.biorxiv.org/content/10.6...
biorxiv.org
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Josie Bryant @josiebryant.bsky.social · 13/02/2026
Incredible time at #AIR2026 covering breadth of respiratory infection, microbiomes and immunology with some really beautiful biology. Thanks to fellow committee members @resp-micro.bsky.social @drclairesmith.bsky.social @ewanharrison.bsky.social , Alex Kayongo and organisers @eventswcs.bsky.social
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Professor Lesley Hoyles @bugsinyourguts.bsky.social · 15/12/2025
Very much looking forward to 2 days of great talks at #MMEG2025, and to catching up with @resp-micro.bsky.social and @jamesemcdonald.bsky.social.
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Josie Bryant @josiebryant.bsky.social · 11/12/2025
Work on respiratory immunology or microbes? Interested in big data, omics or the latest in vitro models?... Treat your lab to a christmas present of AIR 2026 registration! Feb 11th-13th, registration closing soon: coursesandconferences.wellcomeconnectingscience.org/event/air-20...
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Respiratory Microbiomes @resp-micro.bsky.social · 02/12/2025
Really pleased to say we're able to advertise a fully funded PhD studentship supported by the MRC AIM DTP. Smoke and Microbes! Impact of Smoking, Vaping and Pollution on the Respiratory Microbiome www.findaphd.com/phds/project...
findaphd.com
Smoke and Microbes: impact of smoking, vaping and pollution on the respiratory microbiome at University of Birmingham on FindAPhD.com
PhD Project - Smoke and Microbes: impact of smoking, vaping and pollution on the respiratory microbiome at University of Birmingham, listed on FindAPhD.com
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Applied Microbiology International @amiposts.bsky.social · 02/12/2025
Last chance to register! #MMEG2025 is just two weeks away, and we’re shining a spotlight on two unmissable panel sessions at the event.
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Respiratory Microbiomes @resp-micro.bsky.social · 14/11/2025
Abstract deadline for this meeting is Monday - still time to pull one together! Great mix of speakers covering the interface between immunology, infection and omics in respiratory disease.
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The Struggling Scientists @thestrugglings4.bsky.social · 22/10/2025
Globally, supervisor time, manageable workloads, and early‑stage optimism correlate most with satisfaction, while long hours consistently reduce it. What has made the biggest difference for your #PhD experience? Link to the Nature article:
nature.com
Are these the happiest PhD students in the world?
Brazil, Australia and Italy have the highest satisfaction scores in Nature’s global 2025 PhD survey — but are these nations really the best places to do a doctorate?
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Respiratory Microbiomes @resp-micro.bsky.social · 16/10/2025
We have a number of fully funded PhD opportunities supported by the MIBTP DTP in the Department of Microbes, Infection and Microbiomes in the University of Birmingham. Topics from gut, vaginal and nasal microbiomes to AMR, Staph aureus and HPV in tonsils www.birmingham.ac.uk/about/colleg...
birmingham.ac.uk
Midlands Integrative Biosciences Training Partnership - University of Birmingham
MIBTP is a UK-wide doctoral training programme that equips bioscience PhD students with interdisciplinary skills to tackle global challenges in agriculture, health, and sustainability.
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Black Microbiologists Assoc (Black In Micro) @blackinmicro.bsky.social · 16/10/2025
Thank you to everyone who has joined, backed us, and participated. Your impact goes beyond a hashtag; it's a lasting legacy. To keep #BlackInMicro alive, Donate: tinyurl.com/GiveBiM and Register to attend: linktr.ee/BlackInMicro (see links in bio) #BiMWeek2025
A flyer with a dark blue and black gradient background, with faint microbes decorating it. In the middle is a large yellow glowing "5" and underneath it reads "years of #BlackInMicro"
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Josie Bryant @josiebryant.bsky.social · 08/10/2025
New respiratory 🫁 infection and microbiomes conference in Hinxton with stellar line up of speakers. 🚨 Submit your abstracts now! 🚨 Please RT coursesandconferences.wellcomeconnectingscience.org/event/air-20...
coursesandconferences.wellcomeconnectingscience.org
AIR 2026: Genomic and Systems Approaches to Respiratory Infection, Microbiomes and Immunity — 20260211
Course exploring how genomics, microbiome profiling, and systems biology reshape our understanding of respiratory infections and immune dynamics.
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Willem van Schaik @wvschaik.bsky.social · 06/10/2025
Published today! 'The Kocurious case of Noodlococcus: genomic insights into Kocuria rhizophila from characterisation of a laboratory contaminant' A labour of love in the group, led by @gemccallum.bsky.social @biostan.bsky.social @prob91.bsky.social www.microbiologyresearch.org/content/jour...
microbiologyresearch.org
The Kocurious case of Noodlococcus: genomic insights into Kocuria rhizophila from characterisation of a laboratory contaminant
The laboratory contaminant strain Noodlococcus was named for its coccoid cells and unusual colony morphology, which resembled a pile of noodles. Along with laboratory characterisation and electron mic...
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Aga Gambus @agagambus.bsky.social · 07/10/2025
We are looking for a senior technician (can undertake PhD) at Uni of Birmingham (UK) to study chromatin replication and ubiquitylation using Xenopus egg extract. Deadline 28/10/25. Get in touch with me or @m-saponaro.bsky.social for informal inquiries. Please share. www.jobs.ac.uk/job/DOW912/s...
jobs.ac.uk
Senior Research Technician at University of Birmingham
Explore an exciting academic career as a Senior Research Technician. Don't miss out on other academic jobs. Click to apply and explore more opportunities.
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Respiratory Microbiomes @resp-micro.bsky.social · 07/10/2025
Really pleased to be involved with this study, we're going to lend our respiratory microbiome expertise to see what the impact of vaping is like. With smoking, the respiratory microbiome is already altered _before_ some people develop COPD - the dysbiosis has already happened.
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Michelle Buckner @bucknerlab.bsky.social · 02/10/2025
Job opportunity in my lab! We're looking for a post-doc to come join us for an exciting project exploring the evolution of #AMR and #hypervirulence in #klebsiella. Please share!! @unibirmingham.bsky.social Details: www.jobs.ac.uk/job/DOV067/r...
jobs.ac.uk
Research Fellow at University of Birmingham
Apply now for the Research Fellow role on jobs.ac.uk - the leading job board for higher education jobs. View details.
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Respiratory Microbiomes @resp-micro.bsky.social · 21/07/2025
Early notice of NEW Wellcome Conference - AIR 2026: Genomic and Systems Approaches to Respiratory Infection, Microbiomes and Immunity 11th-13th February, sign up below for notifications coursesandconferences.wellcomeconnectingscience.org/our-events/c... It's immunulogy AND it's microbiology 🫁
coursesandconferences.wellcomeconnectingscience.org
Conferences
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Kylie Belchamber @kylie.belchamber.com · 24/06/2025
Congratulations to Dr Sandhu!! Our first PhD student @resp-micro.bsky.social Operation Rainbow Unicorn is complete!! Thanks to examiners Karl Staples and Amanda Rossiter 🦄
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Lucy Evans 🧫🦠👩🏻‍🔬 @biolucy.bsky.social · 24/05/2025
Fabulous Brum Pride parade with the also fabulous @resp-micro.bsky.social #microsky 🧪🧫🏳️‍🌈
Lucy (mid 20s white woman) holding a sign saying 'spread love' with a Petri dish on it containing heart shaped colonies, next to Mike (bearded white man) wearing a trans ally shirt and holding a rainbow flag.Lucy holding her soread love sign with an asexual flag draped over her back.
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Freya Harrison @friendlymicrobe.bsky.social · 21/05/2025
Why should microbiologists working on #CysticFibrosis study Haemophilus influenzae? @phoebesilva.bsky.social explains all for @amiposts.bsky.social www.the-microbiologist.com/features/the... #MicroSky
the-microbiologist.com
​The rise of the early cystic fibrosis lung coloniser, Haemophilus influenzae
With the increasing availability of modulator therapies for people with cystic fibrosis, end-stage infection with Pseudomonas aeruginosa is becoming less common. But are we going to see a rise in the ...
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Respiratory Microbiomes @resp-micro.bsky.social · 21/05/2025
We have a funded PhD opportunity to start this year for an exciting collaborative project with UKHSA as part of the Health Protection Research Unit in Public Health Genomics www.findaphd.com/phds/project... The question is "how do we use metagenomic data for the best clinical outcomes?"
findaphd.com
Integrating metagenomics into respiratory clinical healthcare pathways – forest, trees, needles and haystacks in metagenomic data. at University of Birmingham on FindAPhD.com
PhD Project - Integrating metagenomics into respiratory clinical healthcare pathways – forest, trees, needles and haystacks in metagenomic data. at University of Birmingham, listed on FindAPhD.c...
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Respiratory Microbiomes @resp-micro.bsky.social · 08/05/2025
We will be taking part in Birmingham Pride again this year and joining the march amongst university colleagues. My personal feeling is representation is more important than ever and that my aim is for this research group to be safe for all LGBTQIA+ people 🏳️‍⚧️🏳️‍⚧️
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Respiratory Microbiomes @resp-micro.bsky.social · 22/04/2025
Got family sending me this, which is a good sign that it's been picked up generally! gizmodo.com/scientists-u... it demonstrates how powerful electronic health records are doi.org/10.1093/infd... the link isn't new however, amongst others ISAAC showed this in 2004 pubmed.ncbi.nlm.nih.gov/15020566/
gizmodo.com
Scientists Uncover Unexpected Link to Childhood Asthma
In a study of over one million kids, researchers found that early antibiotic use was linked to higher rates of asthma.
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Cameron Thrash @jcamthrash.bsky.social · 10/04/2025
A blueprint for contemporary studies of microbiomes microbiomejournal.biomedcentral.com/articles/10.... #jcampubs
microbiomejournal.biomedcentral.com
A blueprint for contemporary studies of microbiomes - Microbiome
This editorial piece co-authored by the Senior Editors at Microbiome aims to highlight current challenges in the field of environmental and host-associated microbiome research. We also take the opport...
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Evelien Adriaenssens @evelienadri.bsky.social · 08/04/2025
Less than a week left to apply for this #PhD position!
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Respiratory Microbiomes @resp-micro.bsky.social · 08/04/2025
Trying to come up with different ways to express how common COPD is and its population prevalence. "3 times the population of UK's second city, Birmingham". ...in this talk I propose a new Blue Whale/Football Pitch/Moon and Back unit: the Birmingham.
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Alexa Pragman, MD, PhD @apragman.bsky.social · 04/03/2025
Happy to again co-chair the American Thoracic Society Conference Post-Grad Course "A Hands-On Introduction to Studying the Lung Microbiome" with Bob Dickson and Leo Segal in San Francisco on May 16! Register here: tinyurl.com/Lung-microbi... @ats-pitb.bsky.social
Photos of Alexa Pragman, Leo Segal, Bob Dickson, Michael Cox, Elodie Ghedin, Georgios Kitsios, Jennifer Baker, Chaz Langelier, Sanjay Chotirmall, and Jayanth NarayanaCourse content and faculty listings
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Professor Lesley Hoyles @bugsinyourguts.bsky.social · 04/03/2025
Open Professor Position focussing on host-microbe interactions and the microbiome in the gastrointestinal tract, incorporating functional models - University of Graz, Austria. Applications being accepted until 2 April 2025. #microbiomesky #microsky #academicjobs jobsprof.uni-graz.at/prof/job.php...
jobsprof.uni-graz.at
Professor of Microbiology 2
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Nick Loman @pathogenomenick.bsky.social · 30/01/2025
Our mSCAPE project has been formally announced to the world by @smhopkins.bsky.social at #FOG2025 today: www.gov.uk/government/n... - a really exciting academic-public health collaboration to build a surveillance platform leveraging NHS metagenomic diagnostic data. @meerac.bsky.social
gov.uk
UKHSA launches new metagenomic surveillance for health security
The UK launches mSCAPE, a world-first metagenomics initiative by UKHSA to enhance health security through rapid pathogen detection and surveillance.
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Lucy Crouch @lucyicm.bsky.social · 31/01/2025
New paper out today from the lab on Akkermansia muciniphila 🦠and how it breaks down host glycans! Very proud of my group, especially @cassiebakshani.bsky.social who did an amazing job. @naturemicrobiol.bsky.social www.nature.com/articles/s41...
nature.com
Carbohydrate-active enzymes from Akkermansia muciniphila break down mucin O-glycans to completion - Nature Microbiology
Biochemical characterization of 66 carbohydrate-active enzymes from the gut microorganism Akkermansia muciniphila reveals that these enzymes can break down a range of host glycans, including mucin, wh...
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Vienna Airway Lab @viennaairwaylab.bsky.social · 29/01/2025
"In disease, lung microbiota diversify". Fascinating talk by Dr. Mike Cox @resp-micro.bsky.social at #FOG2025 - especially relevant for severe #asthma! #Immunology #ImmunoSky #MedSky
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Respiratory Microbiomes @resp-micro.bsky.social · 01/01/2025
Wish they'd have got a microbiologist to do the gut microbiome bit of the Christmas Lectures this year! Really disappointing a real microbiome expert didn't get to share their knowledge.
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David Cleary @bacterioskeptic.bsky.social · 19/12/2024
Useful minireview outlining how little we really know about commensals in the context of microbiomes and disease journals.asm.org/doi/10.1128/...
journals.asm.org
Molecular commensalism—how to investigate underappreciated health-associated polymicrobial communities | mBio
The study of commensals coincides with the genesis of bacteriology as a field due to the work of Anton von Leeuwenhoek, who described bacteria from human dental plaque in remarkably accurate drawings ...
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Jessica Blair @jessicamablair.bsky.social · 18/12/2024
At npjAMR we are looking for an early career researcher to take on a dual role of Social Media Editor and Trainee Associate Editor. Lots of training and support provided to develop skills in editing. Details, contact info and how to apply in the link below.Pls repost! www.nature.com/npjamar/edit...
nature.com
Call for Applications: Social Media & Trainee Associate Editor | npj Antimicrobials and Resistance
Call for Applications: Social Media & Trainee Associate Editor
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Respiratory Microbiomes @resp-micro.bsky.social · 18/12/2024
I'll be presenting our work on the Respiratory Microbiome in the Bacteria, Bugs and BigData session at the Festival of Genomics and BioData in the new year festivalofgenomics.com/london/en/pa... come and say hello if you're about!
festivalofgenomics.com
The Festival of Genomics & Biodata London
Join us on Wednesday 29th January & Thursday 30th January 2025 in London for 300+ inspirational speakers, the latest research and clinical breakthroughs, cutting-edge technology and incredible network...
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Pride in Microbiology @prideinmicro.bsky.social · 04/12/2024
Introducing PiM Connections, a mentorship program by the Pride in Microbiology Network! 🌈 🔬 We will connect members based on career & scientific interests to support the next gen of queer & trans scientists. Register to be a mentor or mentee (or both!): buff.ly/3ZhdFGr
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Jon Lim, FRCP PhD @drjonlim.bsky.social · 23/11/2024
🎨 In case anyone need… The NIH BioArt Source is an awesome library of *free* professionally drawn illustrations for scientific presentations or figures. Downloadable in HD. Thank you NIH for this invaluable tool 🙏! Check it out 👇 bioart.niaid.nih.gov
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geinarsson.bsky.social @geinarsson.bsky.social · 04/12/2024
Thrilled to be part of the upcoming PULSE-CF study! 🌟 This ground-breaking research aims to unravel the complexities of polymicrobial communities in the CF airways and their role in pulmonary exacerbations. Learn more: www.pulse-cf.com #CF #Microbes #Viruses
pulse-cf.com
PULSE-CF
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geinarsson.bsky.social @geinarsson.bsky.social · 04/12/2024
💡 Exciting #PhD Opportunity 1! Dive into the role of polymicrobial communities in #CF airways and their impact on infection & pulmonary exacerbations. Join us and contribute to cutting-edge research on chronic respiratory disease. 🌟 Learn more & apply: tinyurl.com/2676cbld
tinyurl.com
REF: PMY/2251/MT6 - PMY-PHD | Courses | Queen's University Belfast
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Respiratory Microbiomes @resp-micro.bsky.social · 04/12/2024
If you want to join the group then multiple opportunities available at the moment. If you don't like what we do then we've got you covered there too! Funded PhD projects for UK and Overseas students in our Department here www.findaphd.com/phds/departm... come and join a lovely bunch of talented PGRs
findaphd.com
University of Birmingham, Department of Microbes, Infections and Microbiomes PhD Projects, Programmes & Scholarships
FindAPhD. Search Funded PhD Projects, Programmes & Scholarships at University of Birmingham, Department of Microbes, Infections and Microbiomes.
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Respiratory Microbiomes @resp-micro.bsky.social · 04/12/2024
Publication day for us and a very first, first author review for Karanjot Sandhu 🥳 publications.ersnet.org/content/erre... Karan's summarised the respiratory microbiome in COPD, the importance of macrophages in the disease and how we think these might be interacting with each other.
publications.ersnet.org
Macrophages and the microbiome in chronic obstructive pulmonary disease
COPD is a heterogeneous disease of the lungs characterised by restricted airflow. Chronic inflammation and recurrent bacterial infections are known to be important driving factors in exacerbations of this disease. Despite a marked increase in the number of alveolar macrophages present in the lungs of COPD patients, there is evidence of reduced clearance of pathogenic bacteria, leading to recurrent infection, exacerbation and subsequent lung function decline. This is thought to be attributed to a defect in the phagocytic capability of both alveolar and monocyte-derived macrophages in COPD. In addition to this defect, there is apparent selectivity in bacterial uptake by COPD macrophages because certain pathogenic genera, such as Haemophilus, Moraxella and Streptococcus, are taken up more readily than others. The respiratory microbiome plays a key role in regulating the host immune response both in health and during chronic inflammation. In patients with COPD, there are distinct changes in the composition of the respiratory microbiome, particularly the lower respiratory tract, where dominance of clinically relevant pathogenic species is commonly observed. Whether there are links between these changes in the microbiome and dysfunctional macrophage phagocytosis has not yet been widely studied. This review aims to discuss what is currently known about these phenomena and to explore interactions between macrophages and the respiratory microbiome.
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Dr Laura Nolan @drlauranolan.bsky.social · 04/12/2024
I'm recruiting a Research Fellow/Postdoc to join my team at #SCELSE to work on food chain biofilms to find new ways to extend food shelf life and reduce food waste. If you have skills in #microbiology and #biofilms apply via Workday: tinyurl.com/3468xm34 or MCF: tinyurl.com/5fyy6hdd. Share widely!
tinyurl.com
Research Fellow (Food Chain Biofilm Biology)
The Singapore Centre for Environmental Life Sciences Engineering (SCELSE) is a unique interdisciplinary Research Centre of Excellence (RCE), funded by National Research Foundation, Ministry of Educati...
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Jessica Blair @jessicamablair.bsky.social · 27/11/2024
Another PhD opportunity in the team! This time its an exciting collaboration with @halllab.bsky.social and @kimhardie.bsky.social looking at why not all bacteria become resistant! www.findaphd.com/phds/project... Deadline 10th Jan and open to Uk and overseas! Pls repost!
findaphd.com
Why does Acinetobacter lwoffii not become resistant to antibiotics? at University of Birmingham on FindAPhD.com
PhD Project - Why does Acinetobacter lwoffii not become resistant to antibiotics? at University of Birmingham, listed on FindAPhD.com
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