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Hall Lab

@halllab.bsky.social
2.3K followers 438 following 87 posts

Prof Lindsay Hall’s research group at University of Birmingham & Quadram Institute. Early life microbiota (we love Bifidobacterium!), and influence of diet, host and pathogens.

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Hall Lab @halllab.bsky.social · 25/09/2026
Happy #PostdocAppreciationWeek! 🦠🤩 Our team wouldn't be the same without our postdocs, past and present. Thank you for your expertise, generous support, mentorship, and for generating so much exciting science and data. You've helped, and will continue to help, shape everything we do.
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Hannah Trivett @hannahtriv.bsky.social · 22/09/2026
Delighted to share that I’ve been awarded one of just four 2026 @pacbio.bsky.social Metagenomics SMRT Grants! 🧬 The grant will support my work in the @halllab.bsky.social at @unibirmingham.bsky.social , exploring long-read #metagenomics, #AMR & #DNAmethylation 🔬👩🏼‍🔬 #microbialgenomics #ECR #PacBio
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Hall Lab @halllab.bsky.social · 22/09/2026
Fab 2nd International Symposium on Bifidobacterial Biology in Parma last week! Excellent talks, fantastic food and great company - we had a blast!
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Hall Lab @halllab.bsky.social · 14/09/2026
This is great to hear - and it was fun contributing to this piece with @whelanfj.bsky.social - who did all the actual hard work!!
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Microbiome Virtual International Forum @microbiomevif.bsky.social · 09/07/2026
📢 Season 6 is currently in the works. In the meantime, #MVIF recordings from Season 5 are available for you to enjoy. If you missed any of the talks, now's a great time to catch up 👉 cassyni.com/c/mvif/series
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Nick Loman @pathogenomenick.bsky.social · 16/05/2026
Rapid release of multiplex PCR amplicon scheme for Andes hantavirus whole genome sequencing validated on control material: www.biorxiv.org/content/10.6... @scalene.bsky.social @stevepullan.bsky.social @ukhsa.bsky.social output from HPRU in Public Health Genomics
biorxiv.org
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Tami Lieberman @contaminatedsci.bsky.social · 27/04/2026
Get your applications in today or tomorrow if you're interested!
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Hall Lab @halllab.bsky.social · 22/04/2026
New paper out in Nature Comms 🎉 Congrats to first author @sekid.bsky.social & thanks team & collaborators We show that B. bifidum & E. coli can cooperate in the breastfed infant gut through nutrient cross-feeding, helping shape early-life microbiome development 🦠👶 www.nature.com/articles/s41...
nature.com
Human milk oligosaccharide mediates mutualism between Escherichia coli and Bifidobacterium bifidum - Nature Communications
Escherichia coli is widespread in healthy breastfed infants, yet its ecological role is unclear. Here, the authors provide insights into the mechanisms supporting its persistence and co-existence with...
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Microbiology Society @microbiologysociety.org · 21/04/2026
Registration is open for our Early Career Summer Conference 🤝👩‍🔬 Join us on 6–7 July 2026 at the University of Birmingham for chance to network with peers and experienced colleagues in various fields of Microbiology, secure your place today: microb.io/ECConf26 #ECConf26
Two people discussing scientific posters at the Microbiology Society Early Career Summer Conference 2025.
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Freya Harrison @friendlymicrobe.bsky.social · 20/04/2026
My super department @warwicklifesci.bsky.social is hiring 6 assistant profs in the wake of recent retirements. We're looking for people in microbiology/infection, cellular disease / immunity; environmental biology; and plant/crop science. #MicroSky warwick-careers.tal.net/vx/lang-en-G...
warwick-careers.tal.net
Assistant Professor x6 (111522-0426) - University of Warwick
Title: Assistant Professor x6 (111522-0426). Application Deadline: . Position Type: Permanent
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Willem van Schaik @wvschaik.bsky.social · 16/04/2026
UK and EU finalise agreement to bring UK into Erasmus+ in 2027 - Thousands across the UK set to benefit from re-opening of the historic Erasmus+ programme www.gov.uk/government/n...
gov.uk
UK and EU finalise agreement to bring UK into Erasmus+ in 2027
Thousands across the UK set to benefit from re-opening of the historic Erasmus+ programme
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Microbiome Virtual International Forum @microbiomevif.bsky.social · 27/03/2026
Join the next #MVIF! In April 2026 Gene Tyson will give a keynote talk, the May 2026 event will be with Georg Zeller as a keynote, and in June 2026 we will welcome Julie Huber @julesdeep.bsky.social Dates and details here: www.microbiome-vif.org/en-US/-/futu...
microbiome-vif.org
Future events
All future events of the Microbiome Virtual International Forum
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Microbiome Virtual International Forum @microbiomevif.bsky.social · 24/03/2026
There is still time to register for #MVIF 47, visit 👇 cassyni.com/s/mvif-47 And, see you soon!
cassyni.com
Cassyni | Science starts with a seminar
Seamlessly organise, run and publish academic research talks. Get started in minutes.
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Hall Lab @halllab.bsky.social · 20/03/2026
Honoured to have been elected a Fellow of the European Academy of Microbiology @femsmicro.org. This recognition means a lot - and it really reflects the fantastic work of teams and collaborators across the years in advancing early life microbiome research 🤩 fems-microbiology.org/european-aca...
fems-microbiology.org
European Academy of Microbiology welcomes 95 new Fellows
Discover the latest election of 95 new Fellows by the European Academy of Microbiology, highlighting diverse expertise in the field.
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ARTIC network @artic.network · 12/03/2026
ARTIC are hiring! Postdoctoral opportunity in metagenomics at the University of Birmingham edzz.fa.em3.oraclecloud.com/hcmUI/Candid...
edzz.fa.em3.oraclecloud.com
Research Fellow (Postdoctoral) - School of Biosciences - 107071 - Grade 7
This post-doctoral position will contribute to both complementary programmes, developing ‘broadband’ metagenomic sequencing capabilities for rapid detection and characterisation of emerging and unknow...
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Hall Lab @halllab.bsky.social · 03/03/2026
Really looking forward to this and also hearing all the other exciting talks! Big thanks again for then invite 😀
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Hall Lab @halllab.bsky.social · 16/02/2026
ISBB 2026 registration is now open! 🧫🧬 📍Parma, Italy (University of Parma) 📅 17-19 Sept 2026 Updated programme + confirmed speakers now online. Early reg: 5 May 2026 | Abstracts: 30 June 2026. Website/registration: www.bifidosympo26.it #ISBB2026 #Bifidobacterium #microbiome #microbiology
bifidosympo26.it
ISBB 2026 – The 2nd International Symposium on Bifidobacterial Biology
The 2nd International Symposium on Bifidobacterial Biology (ISBB) – Parma, Italy – September 18–19, 2026.
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MicrobesNG @microbesng.bsky.social · 09/02/2026
🚨 Calling all ECR's #MicrobialGenomics & #Microbiome symposium in Nottingham (5th June)- present/chair/posters Abstract submission is 5 pm TODAY!!! Keynotes @halllab.bsky.social & @alexmsalmeida.bsky.social #MNGPopUp #MicroSky please share
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Willem van Schaik @wvschaik.bsky.social · 02/02/2026
Only 2 more days to apply for this post as Research Fellow in the Health Protection Research Unit - Public Health Genomics at the University of Birmingham. Come and join us to exciting, cutting-edge genomics and metagenomics work to deliver public health benefits www.jobs.ac.uk/job/DQE112/r...
jobs.ac.uk
Research Fellow at University of Birmingham
Discover Research Fellow jobs and more in higher education on jobs.ac.uk. Apply for further details on the top job board.
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TARGetAMR @target-amr.bsky.social · 28/01/2026
⏰ Don’t miss out! 📢 The TARGetAMR Annual Conference 2026 is coming 14–15 May to Birmingham. 🦠 Connect with experts & shape the future of AMR research. 👉 Register now: www.targetamr.org.uk/hdrevents/ta... #TARGetAMR26
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Hall Lab @halllab.bsky.social · 27/01/2026
We’re recruiting for an RA @unibirmingham.bsky.social! Support our #microbiome research - lab work + sample/data organisation & coordination. Looking for an organised, proactive & great team player. 🗓️ Closes 04/02/26 . To Mar 2028 Apply via UoB portal: edzz.fa.em3.oraclecloud.com/hcmUI/Candid...
edzz.fa.em3.oraclecloud.com
Research Associate - Department of Microbes, Infection and Microbiomes - 106850 - Grade 6
As a Research Associate in the Hall Lab, you will play a crucial role in supporting microbiome research initiatives aimed at enhancing our understanding of the role of early life microbes in promoting...
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Hall Lab @halllab.bsky.social · 16/01/2026
This is a super exciting opportunity - at the interface of cutting edge (meta) genomic methods & public health with #UKHSA. One aspect is working with us to define underappreciated pathogens contributing to maternal-infant infections and how the microbiome influences risk! Further details below 👇
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MicrobesNG @microbesng.bsky.social · 15/01/2026
🚨 Get your abstract in NOW for POPUP Nottingham with @bugsinyourguts.bsky.social & Microbiome-Net deadline 9th Feb 👉 linktr.ee/microbesng #MicrobialGenomics & #Microbiome symposium 5th Jun Focus on #ECRs present/chair Keynotes @halllab.bsky.social & @alexmsalmeida.bsky.social #MNGPopUp #MicroSky
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Hall Lab @halllab.bsky.social · 07/01/2026
Happy New Year – new role! 🎉 We’re looking for a PostDoc to join us in @halllab.bsky.social @unibirmingham.bsky.social. Full-time, fixed-term to March 2028. Note tight closing date: 11 Jan 2026. CV + cover letter (submit via portal). Further details 👇 edzz.fa.em3.oraclecloud.com/hcmUI/Candid...
edzz.fa.em3.oraclecloud.com
Research Fellow - Department of Microbes, Infection and Microbiomes - 106849 - Grade 7
To create and contribute to the creation of knowledge by undertaking a specified range of activities as part of an Investigator project funded by Wellcome, focusing on understanding microbial and diet...
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Professor Lesley Hoyles @bugsinyourguts.bsky.social · 06/01/2026
🧬 Free @microbesng.bsky.social PopUp ECR symposium 🧬 UK-based MRes or PhD student, research assistant or postdoc working on microbial genomics or metagenomics? Present your work and/or chair a session, plus excellent keynote speakers: @halllab.bsky.social and @alexmsalmeida.bsky.social. #MNGPopUp
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Hall Lab @halllab.bsky.social · 19/12/2025
As the year wraps up, a huge thank you to the team for an outstanding year of hard work. It’s been a fab one, with exciting outputs & great opportunities to share our work. Here’s to 2026: welcoming new faces, generating new #microbiome discoveries & continuing to enjoy the process & the laughs! 🤩
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Microbiology Society @microbiologysociety.org · 19/12/2025
📢 We’re looking for Editors to join Microbial Genomics! We’re seeking Editors with some previous editorial experience to support our to help ensure the publication of high-quality, impactful research. Find out more and apply by 19 January 2026: microb.io/Vacancies
microb.io
Jobs
View the current job vacancies at the Microbiology Society.
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Institute of Microbiology and Infection @imibirmingham.bsky.social · 18/12/2025
The 2nd round of PhD projects for the DTP in Microbial Genomics for Health Protection, in collaboration with the UK Health Security Agency @ukhsa.bsky.social, has just launched, funded by @nihr.bsky.social 6 PhD projects are available (UK students only) www.birmingham.ac.uk/research/cen...
birmingham.ac.uk
PhD Microbial Genomics for Health Protection, Biosciences - University of Birmingham
PhD in Microbial Genomics, exciting new Doctoral Training Programme in Microbial Genomics for Health Protection in collaboration with the UK Health Security Agency (UKHSA) launches
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Microbiology Society @microbiologysociety.org · 16/12/2025
Want to shape future collaboration between Parliament and the research community? Share your experiences, challenges and ideas by completing a short survey, led by a Parliamentary Thematic Research Lead. Please complete the survey by 31 December: microb.io/4pg68mB
Bridge Over River In City Against Cloudy Sky stock photo © iStock/EyeEm Mobile GmbH
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Hall Lab @halllab.bsky.social · 15/12/2025
Delighted to share Magda's new review in Annual Review of Food Science and Technology 🎉 We explore how microbe-diet interactions shape health across the life course and the promise (and challenges!) of microbiome-informed precision nutrition 👇 doi.org/10.1146/annu...
doi.org
Microbe–Diet Interactions and Personalized Nutrition
Nutrition plays a fundamental role in shaping human health across the life course, influencing both host physiology and the composition and function of the gut microbiota. In turn, the gut microbiota ...
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Hall Lab @halllab.bsky.social · 10/12/2025
Whoop whoop! 🎉 @hannahtriv.bsky.social’s first-author paper is officially out as a preprint! Some super interesting long-read metagenomics results - especially the dominance of MDR Enterococcus faecium in very sick liver patients. Huge shout-out to the whole team and fab collaborators!
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Applied Microbiology International @amiposts.bsky.social · 02/12/2025
Last chance to register! #MMEG2025 is just two weeks away, and we’re shining a spotlight on two unmissable panel sessions at the event.
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HoloGen MSCA Doctoral Network @hologen.bsky.social · 18/11/2025
HoloGen Doctoral Network Retreat #2 – Barcelona! 🌞 All our PhD candidates together for the first time – a week of project presentations, hands-on workshops, industry talks, and an amazing sailing social on the Med. Science + collaboration + tapas = success! #HoloGen #PhDLife #Microbiome #MSCADN
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Hall Lab @halllab.bsky.social · 13/11/2025
🚨 Join us on 2-4th March 2026 for this fantastic UK-based #microbiome conference! A stellar line-up of speakers, plus plenty of opportunities for selected talks and flash poster pitches. 🗓️ Abstract deadline: 24th November 2025 - don’t miss out!
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Hall Lab @halllab.bsky.social · 30/10/2025
🧫 #MMEG2025 is back! 📍 University of Birmingham | 15-16 Dec 🎤 20+ ERC talks, posters & flash talks 🍽️ Social at Indian Brewery Taproom Keynote: Prof. Corinne Whitby Abstracts due 2 Nov - get those abstracts submitted! Join us for a cracking microbial ecology community meeting 👉
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Applied Microbiology International @amiposts.bsky.social · 13/10/2025
Have research, results, or ideas to share with the microbial ecology community? Don’t miss your chance to present it at #MMEG2025 - abstract submissions close 2 November! 📨 Submit your abstract: appliedmicrobiology.org/ems-event-ca...
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Hall Lab @halllab.bsky.social · 07/10/2025
New paper out! 🎉 Our collab with Jorge & Amanda shows that Bifido can remotely control placental endocrine function (in 🐀) - modulating >400 proteins! 🚀 Published in J Transl Med - translational-medicine.biomedcentral.com/articles/10.... Gut microbes shaping the placenta - pretty amazing stuff! 🧫🤰
translational-medicine.biomedcentral.com
Placental endocrine function is controlled by maternal gut Bifidobacterium in germ-free mice - Journal of Translational Medicine
Background Recent studies have shown that the maternal gut microbiota can regulate placental growth, particularly the transport region, in association with fetal growth. However, the specific role of certain microorganisms in modulating the hormonal production of the placenta, which is critical for supporting fetal development and maintaining a healthy pregnancy, remains largely unexplored. In this context, the objective of this study is to determine whether the maternal colonisation with the early life gut bacterium Bifidobacterium breve UCC2003 regulates placental endocrine function. Methods Pregnant germ-free mice were colonized with or without Bifidobacterium breve UCC2003 (BIF) during pregnancy. The endocrine region of the placenta (junctional zone, Jz) was collected to assess its metabolic profile using metabolomics, the expression of key nutrient uptake genes, hormones and synthetic genes by qPCR, and proteome using LC-MS/MS. Results BIF colonised dams had increased lactate and taurine concentrations in the placental Jz. BIF presence was also associated with upregulated expression of nutrient carriers, particularly those involved in large neutral amino acid and monocarboxylate uptake (e.g., Slc7a8 and Slc16a4). Additionally, key hormones, such as prolactins and pregnancy-specific glycoproteins, were upregulated. The Jz proteome was changed in BIF colonised dams, with over 400 proteins dysregulated. Pathway analysis revealed more than 150 biological processes were altered, including transcriptional activity, protein synthesis, cell cycle progression, and metabolic regulation. Proteins regulated by BIF in the placental Jz were correlated with fetal growth and nutrient levels (namely glucose). Notably, maternal-associated BIF reduced the number of fetal resorptions (early fetal loss). Conclusions In germ-free mice, maternal-associated gut Bifidobacterium breve UCC2003 regulates placental endocrine capacity, by altering its metabolic profile and ability to produce endocrine factors. This study provides the first clear evidence that the maternal gut microbiota not only influences placental transport function, but also regulates its endocrine outputs. Graphical Abstract
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James McDonald @jamesemcdonald.bsky.social · 06/10/2025
MMEG is coming to @unibirmingham.bsky.social in December - look out for some exciting announcements about the programme in the next few weeks! Abstract submission and registration is open 👇🏻
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Hall Lab @halllab.bsky.social · 30/09/2025
📢🚨 Check out @drgdavidson.bsky.social's 3-year senior PDRA role below @uniofeastanglia.bsky.social! Super exciting project exploring wildlife ecology 🐾 and gut microbiome bioinformatics 🧬! 👉 Apply: vacancies.uea.ac.uk/vacancies/18... 💬 Informal enquiries to Gabrielle welcome!
vacancies.uea.ac.uk
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Hall Lab @halllab.bsky.social · 30/09/2025
Come join us 2-4th March 2026 for a cracking #microbiome conference in Hinxton UK! Speaker line up is AMAZING and lots of opportunities for ECRs for selected talks, flash talks and posters. Bursaries are also available! See details below 👇
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Hall Lab @halllab.bsky.social · 29/09/2025
We were gutted that @eliza-coli.bsky.social’s stunning illustration wasn’t chosen for the front cover - I mean, just look at it! ✨ Working with Eliza was a joy & if you’re looking for a brilliant scientific illustrator to bring your projects to life, I can’t recommend her highly enough 🎨🧫🦠
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Hall Lab @halllab.bsky.social · 17/09/2025
Such an engaged audience at #EESMicrobiome with lots of great questions after my talk! Big thanks to the organisers for inviting me to present some of the teams recent early life #microbiome work. Conference has been AMAZING so far!
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Hall Lab @halllab.bsky.social · 17/09/2025
🚨 An excellent opportunity for scientists in Africa, at all career stages, working on maternal & child microbiome research 🚨 📚 Blended learning (3 months) incl. prep modules, hands-on training (12-17 Apr 2026) & mentoring. coursesandconferences.wellcomeconnectingscience.org/event/human-...
coursesandconferences.wellcomeconnectingscience.org
Human Gut Microbiome Metagenomics – Africa — 20260412
Build skills in microbiome metagenomics, bioinformatics, and data interpretation to advance maternal and child health research
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Hall Lab @halllab.bsky.social · 11/09/2025
Excited to share our @cp-cellhostmicrobe.bsky.social led by Magda showing how Bif has co-evolved with different animal hosts 🐒🐭🐷🐦 Key takeaways: 🔹 Host ancestry + diet shape Bif evolution 🔹 Mammals enriched for carb-busting enzymes 🔹 Untapped diversity in non-human hosts = new probiotic potential
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Hall Lab @halllab.bsky.social · 18/08/2025
Really pleased to see this study led by @raymondkiu.bsky.social now published in @natcomms.nature.com! We show that probiotics help modulate the preterm infant 👶#microbiome - to reduce ARGs, lower MDR bacteria 🦠 & increase beneficial Bifido ✨ Huge team effort! www.nature.com/articles/s41...
nature.com
Impact of early life antibiotic and probiotic treatment on gut microbiome and resistome of very-low-birth-weight preterm infants - Nature Communications
Here, the authors show that giving probiotics to very low birth weight preterm babies can help reduce harmful antibiotic-resistant bacteria in the gut and support the development of a healthier microb...
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Hall Lab @halllab.bsky.social · 13/08/2025
🧠🌍 Free Online Symposium African Microbiomes & Mental Health 📅 29 Sept 2025 | 🕒 14:00 SAST / 13:00 BST 🔗 Register or submit an abstract: forms.gle/8WBZnimr3xui... 🎤 Join leading researchers, clinicians & lived experience experts. 🌟 Submit an abstract for a 10-min spotlight talk! 📄 Speaker info below
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Christine Moissl-Eichinger @chmoei.bsky.social · 05/08/2025
🚨 2 funded #PhD positions (ERC Adv Grant) in the Moissl-Eichinger Lab, Graz! Study Methanobrevibacter as a keystone in the gut microbiome. 💡 Omics, modeling, synthetic consortia 📅 Deadline: Sept 10, 2025 🌍 Int’l applicants welcome! Application link below. #microbiomesky #archaeasky #microsky
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Professor Lesley Hoyles @bugsinyourguts.bsky.social · 05/08/2025
Interested in bacteriocins targeting Gram-negative bacteria causing UTIs? Come and work with me and PI @davidnegus.bsky.social as a research assistant on a 12-month project, funded by The Urology Foundation. #UTIsky
vacancies.ntu.ac.uk
Research Associate:Clifton Campus
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Hall Lab @halllab.bsky.social · 01/07/2025
Barnstorming talk by @coytelab.bsky.social at the @imibirmingham.bsky.social seminar series today! 🧬 “An ecosystem on a leash: understanding the drivers of gut microbiome dynamics” Thanks for making the trip down from Manchester and sharing some super cool published & preliminary data! 🚀
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