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Ralf Jansen

@ralfjansen.bsky.social
1.2K followers 908 following 16 posts

PhD student in the Brennecke lab (@juliusbrennecke.bsky.social) at IMBA (@imbavienna.bsky.social), Vienna Interested in transcription and RNA export. www.oeaw.ac.at/imba/research/julius…

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Reposted by Ralf Jansen
Virginia Busetto @virginiabusetto.bsky.social · 08/09/2026
Very excited to share our new preprint: “A pseudohelicase-centered complex couples assembly-dependent RNA cleavage to poly(UG)ylation”! 🎉 Want to know more? 🧵👇 www.biorxiv.org/content/10.6...
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sandraduharcourt.bsky.social @sandraduharcourt.bsky.social · 08/09/2026
Very happy to see our Nature Reviews Genetics article on programmed DNA elimination across eukaryotes out! A fantastic collective effort with an amazing group of colleagues, born from inspiring discussions at the Fondation des Treilles. rdcu.be/tmvKgsPZNhBa @laurarossevo.bsky.social
rdcu.be
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Peter Andersen @germline.bsky.social · 08/09/2026
We are recruiting a PhD student 🥼🙋 Topic: how germ cells bend gene expression dogmas Fly genetics + proteomics + genomics. Fully funded. Aarhus University 🇩🇰 info on the project and how to apply👇 mbg.au.dk/en/peter-and... I'd really appreciate it if you'd help spread the word. Thanks
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Peter Andersen @germline.bsky.social · 02/09/2026
Finally - the 🧵! So, the piRNA pathway defends the animal germline from transposons. But most of what we know comes from narrow developmental windows like late oogenesis, where it's easiest to study. We asked if the pathway is the same across development. It is not! /+
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Peter Andersen @germline.bsky.social · 29/08/2026
We watched piRNAs and transposons across development, saw them dance tightly and wrote a paper about it. It's so cool to see it online and we will make a thread about it all very soon. Stay tuned :-)
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Rebecca Schneeweiss @rebeccaschneeweiss.bsky.social · 24/08/2026
I am truly grateful for the opportunity to contribute to this exciting project revealing that CIP2A tetramerization via its C-terminus is required for DNA repair in mitosis.
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Ulrich Hohmann @hohmannulrich.bsky.social · 22/06/2026
Super cool to see the result of our collaborative work with @heick.bsky.social 's lab finally out! Shaped through many discussions with @abugai.bsky.social, @lorenzoana.bsky.social & @max2max.bsky.social, @juliusbrennecke.bsky.social & Clemens, trying to decipher LENG8's secrets!
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Plaschka lab @plaschkalab.bsky.social · 18/06/2026
Now published! We investigated how polyadenylated RNAs are targeted for decay in the human nucleus. www.nature.com/articles/s41... (1/5)
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Institute of Molecular Biotechnology @imbavienna.bsky.social · 17/06/2026
The labs of Julius Brennecke and Clemens Plaschka reveal a molecular decision point that determines whether RNA molecules are exported for use or targeted for destruction. Now published in Nature: www.nature.com/articles/s41...
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Universität Wien / University of Vienna @univie.ac.at · 20/05/2026
Unis rufen zu Demos gegen Kürzungen auf‼️ Die Unis befürchten Einsparungen von einer Mrd. Euro im #Budget. Rektorensprecherin Brigitte Hütter sprach bei einer Pressekonferenz von einem "Supergau" für Unis, Wirtschaft und Gesellschaft. Rektor Schütze sprach von enormen Schaden für die Reputation. ⤵️
univie.ac.at
Budget - Unis rufen zu Demos gegen Kürzungen auf
Rektor Schütze:
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Julian Ross @jamesjulianross.bsky.social · 18/05/2026
Thrilled to see my main PhD work out on bioRxiv! Huge thanks to @arburga.bsky.social and my wonderful labmates, collaborators, colleagues and friends @imbavienna.bsky.social @viennabiocenter.bsky.social for a detailed breakdown see below 👇
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Pauli Group (posts by Andi Pauli) @pauligroup.bsky.social · 13/05/2026
Join us at our special anniversary Symposium on RNA biology at the @vbcscitraining.bsky.social campus! We promise 3 days of interesting science, discussions and hopefully new ideas and learnings for everyone - plus a symposium dinner at the Vienna city hall!
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Baptiste Rafanel @baptisterafanel.bsky.social · 06/05/2026
I'm super happy to finally see the paper published ! Check out the full story here: link.springer.com/article/10.1...
link.springer.com
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Ralf Jansen @ralfjansen.bsky.social · 04/05/2026
The work of my colleague Baptiste Rafanel is now published.
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Ralf Jansen @ralfjansen.bsky.social · 04/05/2026
Five years after a short rotation in the Peters lab, I’m happy to see this cool story spearheaded by Gordana Wutz finally published.
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sandraduharcourt.bsky.social @sandraduharcourt.bsky.social · 08/04/2026
Our latest publication is now out at Genome Biology! link.springer.com/article/10.1... We uncover a unique association between a H3K27me3 reader complex and active transcription. A thread with our key findings: (1/8) #TEsky #Polycomb #transcription #smallRNAs
link.springer.com
A H3K27me3 reader complex couples H3K27me3 accumulation to nascent transcription of transposable elements in Paramecium - Genome Biology
Background The ability to deposit histone H3K27-trimethyl (me3) marks is essential for transcriptional repression by Polycomb Repressive Complex 2 (PRC2). This is largely attributed to Polycomb repres...
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Peter Andersen @germline.bsky.social · 01/04/2026
Germ cells have their own versions of core transcription factors and fertility depends on them. We're hiring a PhD student to figure out how! 📢 Fly genetics + proteomics + genomics. Fully funded. Aarhus University 🇩🇰 Deadline May 1 👇 Please share with anyone who might be interested!
phd.nat.au.dk
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Institute of Molecular Biotechnology @imbavienna.bsky.social · 09/03/2026
A consortium of group leaders from IMP, IMBA (Vienna BioCenter) and ISTA has been awarded an FWF Emerging Fields grant to study how germ cells safeguard and pass on genetic information across generations.
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eric lai @lucksmith.bsky.social · 17/02/2026
as always, beautiful mechanistic dissection by @86dominik.bsky.social @juliusbrennecke.bsky.social lab, taking advantage of genetics and genomics to get decisive insights into piRNAs! surprising how instructive U content is for piRNA biogenesis, but it makes total sense, the system is very clever! 🪰
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Julius Brennecke @juliusbrennecke.bsky.social · 13/02/2026
The demystification of piRNA clusters if you wonder how cells generate piRNAs specifically against transposons & you are looking for a weekend read check out @86dominik.bsky.social's opus magna (or Dominik's great thread) a shared project with the one and only Rippei Hayashi, lab alumnus & friend
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Dominik Handler @86dominik.bsky.social · 13/02/2026
How does the piRNA pathway solve the self vs. non-self problem? 🧬 Since piRNAs come from single-stranded RNA, how does the cell choose the right ones? For years, "piRNA clusters" were seen as THE privileged source. But are they really special and earmarked for biogenesis? (1/19)
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Institute of Molecular Biology (IMB) @imbmainz.bsky.social · 09/02/2026
Ulrich’s research will help advance our understanding of RNA biology & gene regulation, as well as how these mechanisms might be altered during viral infections & other diseases. @hohmannulrich.bsky.social comes from the @impvienna.bsky.social / @imbavienna.bsky.social www.imb.de/about-imb/ne...
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Institute of Molecular Biology (IMB) @imbmainz.bsky.social · 06/02/2026
@lorenzoorts.bsky.social previously worked as a postdoctoral fellow at @impvienna.bsky.social in Austria. She will establish a new lab at IMB to investigate how mRNA translation is activated in the early embryo. Welcome to IMB Laura! 💐 Read more here: www.imb.de/about-imb/ne...
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Karina Jouravleva @karinajouravleva.bsky.social · 06/02/2026
Happy to see our study out! We define the sequence determinants for miRNA-target interactions in flies and provide a foundation for improving computational prediction of miRNA-mediated regulation in Drosophila. www.nature.com/articles/s41... #miRNA, @natcomms.nature.com, @rti-umasschan.bsky.social
nature.com
Biochemical principles of miRNA targeting in flies - Nature Communications
MicroRNAs guide Argonaute proteins to repress gene expression. Here, the authors define the binding rules for five Drosophila miRNAs, showing a narrow preference for canonical seed sites and identifyi...
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allepasse.bsky.social @allepasse.bsky.social · 26/01/2026
I’m happy to share the main result of my PhD, which you can find on bioRxiv www.biorxiv.org/content/10.6.... If you are interested in learning about a new way to perform DNA-PAINT multiplexing, which we call Combi-PAINT, or if you are interested in the study of mRNA conformation, keep reading! 1/10
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Zeitlinger Lab @zeitlingerlab.bsky.social · 09/01/2026
The @zeitlingerlab.bsky.social is pleased to announce @sergio-gma91.bsky.social’s preprint “High-resolution binding data of TFIID and cofactors show promoter-specific differences in vivo” (www.biorxiv.org/content/10.6...). TLDR; TFIID behaves differently depending on promoter type. More below:
biorxiv.org
High-resolution binding data of TFIID and cofactors show promoter-specific differences in vivo
TFIID is instrumental in recognizing promoter sequences and initiating transcription, yet a cohesive understanding of how this complex interacts with and functions at different promoter types in vivo ...
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Filip Nemcko @nemcko.bsky.social · 29/12/2025
Do transcriptional activators work on any promoter? Our data says no. 🙅‍♂️ Despite driving ~2/3 of mammalian genes, CpG island (CGI) promoters have remained a puzzle. We identified >50 activators that are exclusively compatible with this promoter class. 🧬
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Changwei YU @changweiyu.bsky.social · 22/12/2025
Very happy to share my postdoc work (on preprint), where we try to understand a long-standing transcription-silencing paradox, and uncovered a hidden RNA decay arm of nuclear piRNA pathway, see detailed threads quoted from @juliusbrennecke.bsky.social
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Julius Brennecke @juliusbrennecke.bsky.social · 22/12/2025
Intrigued by a long-standing conundrum in small RNA biology—how nuclear Argonaute proteins silence transposons when they *need* target transcription for their own recruitment—we studied the piRNA pathway. And found a hidden RNA-decay axis from Piwi to the RNA exosome.
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Federico Teloni @fedeteloni.bsky.social · 04/12/2025
I am happy to share that my postdoctoral work in the @gerlichlab.bsky.social at @imbavienna.bsky.social is finally out 🎉! Our study reveals how cohesin guides focused and accurate homology search. Read more 👉 www.science.org/doi/10.1126/... Follow along for key insights and updates! 🧵
science.org
Cohesin guides homology search during DNA repair using loops and sister chromatid linkages
Accurate repair of DNA double-strand breaks (DSBs) is essential for genome stability, and defective repair underlies diseases such as cancer. Homologous recombination uses an intact homologous sequenc...
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Alejandro Burga @arburga.bsky.social · 24/11/2025
🪱 Selfish genes are everywhere and drive some of biology’s biggest innovations (CRISPR, antibody recombination, epigenetics). Yet almost no one asks the obvious question: how does a selfish gene begin? Our new manuscript uncovers how selfishness can emerge directly from the host genome.
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Plaschka lab @plaschkalab.bsky.social · 20/11/2025
Congrats to Dr. @julsportell.bsky.social on her PhD! Her journey as a joint student (Brennecke/Our Lab) led to key insights into gene silencing. Paper: www.cell.com/molecular-ce.... Journey: www.viennabiocenter.org/about/news/t.... CP.
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Ulrich Hohmann @hohmannulrich.bsky.social · 19/11/2025
Finally out in @nature.com! We uncovered a mechanistic framework for a general and conserved mRNA nuclear export pathway. www.nature.com/articles/s41.... 1/
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Julius Brennecke @juliusbrennecke.bsky.social · 07/11/2025
just in time for the opening of the @hohmannulrich.bsky.social group at @imbmainz.bsky.social what started as a project on how cells export piRNA precursors, ended up as a tour de force in mRNA export. truly wonderful collaboration with @plaschkalab.bsky.social at the @viennabiocenter.bsky.social
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Institute of Molecular Biotechnology @imbavienna.bsky.social · 06/11/2025
New paper alert! Scientists in Julius Brennecke’s lab at IMBA and Clemens Plaschka’s lab at @impvienna.bsky.social solved a decade-old puzzle, uncovering how the information molecule mRNA travels from the cell’s nucleus to its periphery. More: imba.science/3Xl2hJ3
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Max Wilkinson @maxewilkinson.bsky.social · 31/10/2025
The Wilkinson Lab is open for science! @mskcancercenter.bsky.social 🧬We'll be finding funky new RNA biology, mainly by looking at reverse transcriptases (i.e. the Best Enzymes In The World)🧬 annnd: I'm hiring - come join! Especially postdocs and PhD students - please get in touch (NYC is great)
wilkinsonlab.bio
Wilkinson Lab
We discover and study reverse transcriptases
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IMP @impvienna.bsky.social · 13/10/2025
What’s it like doing a PhD between two labs? In our latest Behind the Science, Júlia Portell i de Montserrat, shared PhD student in the Plaschka lab at the IMP and the Brennecke lab at @imbavienna.bsky.social, tells us more about her unusual but rewarding PhD journey: bit.ly/3IHXtdp
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Dominik Handler @86dominik.bsky.social · 14/10/2025
When transposons jump, genomes diverge - even in cultured cells. I am happy to share our new preprint: a chromosome-scale genome assembly for Drosophila OSC cells, one of the key model systems in the piRNA field, especially for nuclear piRNA biology. 🧬🧵 (1/12)
Graphical abstract: The Drosophila OSC Genome as a resource for transposon and piRNA biology. The figure illustrates the workflow and key findings. Left: De novo genome assembly using Oxford Nanopore Technologies (ONT) long reads and Hi-C data generates a phased assembly distinguishing unique (blue) and repetitive (orange) sequences. Dot plot comparison between OSC-r1.01 and dm6 reference genomes shows overall synteny with extensive structural variation. Middle: A freely accessible UCSC genome browser session displays multi-omics data tracks including gene models, transposon insertions, chromatin accessibility, transcription, small RNAs, and histone modifications. Right: New insights into flamenco piRNA cluster biology reveal >730 kb transcribed from a single promoter without major splicing. Tethering assays demonstrate long-range silencing effects across the locus, and genome browser tracks show coordinated regulation of piRNA production, transcription, and chromatin state. This resource enables comprehensive studies of transposon regulation and piRNA pathway function in a widely-used Drosophila cell line.
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Ulrich Hohmann @hohmannulrich.bsky.social · 12/10/2025
Thrilled to share that I’ll be joining @imbmainz.bsky.social in February 2026 to start my own group! We will explore new mechanisms in eukaryotic gene expression, leveraging ‘evolutionary play’ to uncover how regulation, repurposing, and hijacking shape RNA biology. PhD positions available!
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Ulrich Hohmann @hohmannulrich.bsky.social · 23/09/2025
How are RNAs sorted for export vs. degradation in the nucleus? In collaboration with @heick.bsky.social’s lab we (@clemensplaschka.bsky.social and @juliusbrennecke.bsky.social labs) discovered a direct mechanistic link between the export and decay machineries: www.biorxiv.org/content/10.1... (1/x)
biorxiv.org
Molecular basis of polyadenylated RNA fate determination in the nucleus
Eukaryotic genomes generate a plethora of polyadenylated (pA+) RNAs[1][1],[2][2], that are packaged into ribonucleoprotein particles (RNPs). To ensure faithful gene expression, functional pA+ RNPs, in...
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Laura Lorenzo Orts @lorenzoorts.bsky.social · 15/09/2025
I am excited to announce that I will be moving to IMB Mainz next year! The Winter call for the IPP PhD program is now open; if you are interested in maternal #mRNA regulation and #translation in early vertebrate development, please apply! Deadline: 16 October. More info: www.imb.de/students-pos...
imb.de
Laura Lorenzo Orts
IMB Mainz
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Julius Brennecke @juliusbrennecke.bsky.social · 18/09/2025
Love RNA biology? Join us to explore the piRNA pathway with structural and genetic approaches (see 👇👇). PhD student/postdoc position co-supervised by Clemens Plaschka & myself. DM or email us if you’d like to know more! @vbcscitraining.bsky.social @imbavienna.bsky.social @impvienna.bsky.social
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Júlia Portell Montserrat @julsportell.bsky.social · 17/09/2025
My first first-author paper is out!🎉 Here we propose a model where a silencing complex, PIWI*, assembles on target RNAs to recruit effectors and shut down transposon activity. Huge thanks to the Brennecke and Plaschka labs, especially Julius and Clemens, and all co-authors!
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Julius Brennecke @juliusbrennecke.bsky.social · 17/09/2025
PIWI clade Argonautes are essential for transposon silencing. Without them, animals are sterile due to massive transposon activity. But how does piRNA-guided target interaction translate into silencing? PhD student Júlia Portell Montserrat has an intriguing answer www.cell.com/molecular-ce...
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Julius Brennecke @juliusbrennecke.bsky.social · 09/09/2025
Close inter-lab collaborations with shared PhD students and postdocs are the future! Julia is the hero of this work, she is currently looking for postdoc labs …
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Molecular Cell @cp-molcell.bsky.social · 08/09/2025
Target RNA recognition drives PIWI∗ complex assembly for transposon silencing
dlvr.it
Target RNA recognition drives PIWI∗ complex assembly for transposon silencing
Portell-Montserrat et al. reveal that target RNA recognition by PIWI-piRNA complexes triggers the assembly of conserved PIWI∗ complexes, molecular platforms that recruit silencing effectors in both the nucleus and cytoplasm. This mechanism, conserved across animals, explains how piRNA pathways couple target recognition to transposon silencing.
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IMP @impvienna.bsky.social · 08/09/2025
New paper by our Plaschka lab with Brennecke’s lab at IMBA! Researchers at the Vienna BioCenter have solved a 20-year-old mystery in genome biology, revealing how PIWI proteins engage partner molecules to silence “jumping genes” that threaten genetic stability.
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Ralf Jansen @ralfjansen.bsky.social · 03/09/2025
So happy to see the PhD work of Emilio Santillán published—what an amazingly elegant piece of work!! Working with him and Luisa at the IMP was a great and formative experience.
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Baptiste Rafanel @baptisterafanel.bsky.social · 14/08/2025
1/ How do animals develop immunity against a newly encountered transposable element from scratch? Our study reveals that the mobility of TEs is their Achilles heel, allowing hosts to develop a powerful small RNA-mediated silencing response. www.biorxiv.org/content/10.1...
biorxiv.org
Antisense transposon insertions into host genes trigger piRNA mediated immunity
Transposable elements pose a persistent threat to genome integrity, yet how host defense systems adapt to newly invading elements remains poorly understood. Here, we reveal how Drosophila melanogaster...
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Ralf Jansen @ralfjansen.bsky.social · 02/08/2025
My colleagues Baptise Rafanel et al. investigated how a newly invading transposon can be silenced. They found that not only antisense insertions in piRNA clusters such as flamenco, but also insertions in the 3‘UTR of genes can drive potent silencing.
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