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Pfliegler Lab at University of Debrecen

@pflieglerlab.bsky.social
190 followers 139 following 212 posts

Saccharomyces, yeasts, mycobiome, phylogenomics

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Pfliegler Lab at University of Debrecen @pflieglerlab.bsky.social · 23/09/2026
The first non-chaotic(?) week of the semester is here when we can actually get work done! We welcome two new PhD students in the Lab, Soulafa from 🇸🇾 and Gergő from 🇭🇺 who will work with #yeast and other fungi! Good luck and welcome:)
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Pfliegler Lab at University of Debrecen @pflieglerlab.bsky.social · 19/09/2026
Wow, Collaborative Yeast Cross clones, a library of 11,392 segregants! #yeast
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Pfliegler Lab at University of Debrecen @pflieglerlab.bsky.social · 18/09/2026
I'm very proud of my students taking part at the Genetics Miniconference in Szeged today, showing their work for the first time! We divided the posters into 10 blocks, each for a student project:) Congratulations Team! #yeast #lablife
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Pfliegler Lab at University of Debrecen @pflieglerlab.bsky.social · 09/09/2026
Very interesting story on #Aspergillus westerdijkiae in cheese caves! #fungalevolution
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Pfliegler Lab at University of Debrecen @pflieglerlab.bsky.social · 21/08/2026
Finally, after hearing so much about the Jovaru Alus, the Jovaru ale from @larsga.bsky.social and his blog, I finally tasted this unique wonderful farmhouse ale in Vilnius, Lithuania!
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Pfliegler Lab at University of Debrecen @pflieglerlab.bsky.social · 19/08/2026
Visiting Riga and Latvia: what a nice sight, mobile kvass vendors! #yeast
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Pfliegler Lab at University of Debrecen @pflieglerlab.bsky.social · 23/07/2026
"profiled fitness responses to over 600 bioactive and natural compounds, revealing broader and more polarized bioactivity than the standard #yeast gene-deletion collection" #Saccharomyces
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Pfliegler Lab at University of Debrecen @pflieglerlab.bsky.social · 28/06/2026
"fungi are reliable biomarkers for gut maturation, with the notable emergence of #Saccharomyces and Malassezia as some of the strongest indicators. Fungal composition was strongly associated with infant age and with the later development of both atopic dermatitis and food allergy" #mycobiome
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Pfliegler Lab at University of Debrecen @pflieglerlab.bsky.social · 06/06/2026
It is always a challenge but also fun to go back to partially completed projects: this manuscript supplementary file happens to be last modified in Nov 2020... Time to wrap things up! #Saccharomyces #lablife
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Pfliegler Lab at University of Debrecen @pflieglerlab.bsky.social · 27/05/2026
1/2 Happy to share this #Saccharomyces epidemiological study led by @renatokovacs1.bsky.social: retrospective analysis of all patients with S. cerevisiae isolated from sterile body sites between January 2019 and December 2025 in Debrecen. Rare sterile-site infections associated with high mortality!
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Pfliegler Lab at University of Debrecen @pflieglerlab.bsky.social · 25/05/2026
www.sciencedirect.com/science/arti... Decoding alcoholic beverage and brewing practices of the Qin state during the Warring States period (475-221 BC) based on archaeological evidence. "Qin people mastered brewing and qu production during the Warring States period." #yeast
sciencedirect.com
Decoding alcoholic beverage and brewing practices of the Qin state during the Warring States period (475-221 BC) based on archaeological evidence
China is one of the earliest regions to consume alcoholic beverages in the world. More and more ancient alcoholic beverage residues have been found in…
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Pfliegler Lab at University of Debrecen @pflieglerlab.bsky.social · 21/05/2026
Prof. Csaba Szabó from University of Fribourg giving an invited talk at our University of Debrecen on the reproducibility crisis in #science!
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Pfliegler Lab at University of Debrecen @pflieglerlab.bsky.social · 20/05/2026
Most of my at-home fermentation experiments are successful, this one is not :) It took me a looooot of time to get my hands on viable and pure Monascus from red yeast rice products. After inoculating to steamed rice, the Rhizopus-like and Aspergillus-like molds took over the slow-growing Monascus:
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Pfliegler Lab at University of Debrecen @pflieglerlab.bsky.social · 15/05/2026
Low-level contamination confounds population genomic analysis and also phylogenomics in this example of #yeast #Saccharomyces. Very important: "Contamination rates differed however among sequencing centers: was high for 2 #Saccharomyces studies (2% or 15% of genomes)."
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Pfliegler Lab at University of Debrecen @pflieglerlab.bsky.social · 12/05/2026
This week we conclude our General and Applied Microbiology Lab class with 1st year BSc students at UDebrecen. We spent the semester with studying sourdough yeasts and bacteria, with spp identification, genetic fingerprinting, and classic microbiological experiments. We also made new sourdoughs...
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Pfliegler Lab at University of Debrecen @pflieglerlab.bsky.social · 08/05/2026
Exactly 10 yrs ago I had the incredible opportunity to observe horseshoe crabs in their natural habitat, a majestic species I first have seen in David Attenborough's Trials of Life series, back in the 90s, on VHS:) Happy 100th Birthday, Sir! naturephoto-walter.blogspot.com/2016/05/atla...
naturephoto-walter.blogspot.com
Atlantic Ocean at Cape Cod, USA (Atlantischer Ozean bei Cape Cod, USA) (Atlanti-óceán Cape Cod-nál, USA) 05.2016.
We visited the Cape Cod National Seashore in Massachusetts in May to photograph the annual spawning of the horseshoe crabs, ancient-...
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Pfliegler Lab at University of Debrecen @pflieglerlab.bsky.social · 05/05/2026
Real #cask ale or real ale from the UK is a wonderful beverage often described as a "live product", with live yeasts responsible from secondary fermentation and carbonation. I found only one scientific paper on cask ale pubmed.ncbi.nlm.nih.gov/36073539/ so I had to try isolating from it in London:)
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Pfliegler Lab at University of Debrecen @pflieglerlab.bsky.social · 04/05/2026
Insights from sourdough redefine the domestication landscape of baker's #yeast. #yeastevolution Can't wait to read this @caitismuheil.bsky.social !
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Pfliegler Lab at University of Debrecen @pflieglerlab.bsky.social · 01/05/2026
We are on a short trip in London, tasting some real #cask ale at The Lucas Arms :)
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Maximum Academic Press @mapjournals.bsky.social · 28/04/2026
#Mycosphere This groundbreaking study reveals incredible hidden microbial diversity in tropical ecosystems and expands our understanding of fungal ecology. 🔬 Details: www.maxapress.com/article/doi/10.48… #fungalecology #species #flowerstyle #ecosystems
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Pfliegler Lab at University of Debrecen @pflieglerlab.bsky.social · 15/04/2026
In #yeast probiotic news: www.fzata.com/post/fzata-i... Fzata's new drug candidate, in fact a probiotic #Saccharomyces, FZ002, is designed to neutralize both of the main C. diff toxins (toxin A and toxin B). Clinical trials, sponsored by NIH, are planned to begin in summer of 2026 upon FDA clearance
fzata.com
Fzata's Innovative C. diff Infectious Disease Therapy: A New Hope in Biotech
April 9, 2026C. diff (short for Clostridioides difficile) is a serious infection that affects the gut. It can cause intense diarrhea, painful cramping, and extreme fatigue—sometimes lasting for weeks....
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Pfliegler Lab at University of Debrecen @pflieglerlab.bsky.social · 07/04/2026
Farmhouse #yeast show sexual competence, influencing their evolution trajectory #Farmhouse yeasts show phenotypic diversity but also common domestication traits #yeastevolution www.cell.com/current-biol...
cell.com
Distinctive domestication of farmhouse beer yeasts preserved pre-industrial genetic and phenotypic diversity
Bircham et al. show that traditional European farmhouse brewing preserves genetically diverse, sexually competent Saccharomyces cerevisiae populations that are genetically and phenotypically distinct ...
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Pfliegler Lab at University of Debrecen @pflieglerlab.bsky.social · 01/04/2026
Randy W. Scheckman presenting a special lecture at our University of Debrecen - he won the 2013 Nobel Prize in Physiology or Medicine for using baker’s #yeast to uncover the genetic machinery regulating vesicle transport!
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Pfliegler Lab at University of Debrecen @pflieglerlab.bsky.social · 31/03/2026
Today we made great progress with a new multi-locus sequence typing approach under development for #Saccharomyces with two BSc students - this is all their work! Looking forward to analyze the sequences :)
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Pfliegler Lab at University of Debrecen @pflieglerlab.bsky.social · 26/03/2026
Candida Genome Database’s new website is live! #yeast
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Pfliegler Lab at University of Debrecen @pflieglerlab.bsky.social · 12/03/2026
With my recent trip to Rio de Janeiro, I managed to visit 26 Terrestiral Ecoregions of the 846 existing ones to do at least some nature photography and exploration. Still a lot to go! I also visited 9 Marine Ecoriegions (of 232) and 13 Freshwater Ecoregions (of 426).
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Pfliegler Lab at University of Debrecen @pflieglerlab.bsky.social · 10/03/2026
www.nature.com/articles/s42... It is so great to see this paper finally out! w/ @alexandraimre.bsky.social we started this project years ago. We checked what phenotypes of the probiotic #yeast are selected for in an experimental 🐭 bloodstream infection in 6 different S. 'boulardii' backgrounds /1
nature.com
ENA1 deficiency attenuates Saccharomyces ‘boulardii’ probiotic yeast virulence in immunosuppressed mouse fungaemia model - Communications Biology
A new probiotic Saccharomyces ‘boulardii’ yeast strain with diminished virulence is developed using experimental infection and observations on in-host selection, achieved through the deletion of the E...
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Pfliegler Lab at University of Debrecen @pflieglerlab.bsky.social · 06/03/2026
We opened a Brazilian wild #yeast fermented red wine I brought back from Rio. Very nice, strong notes of chocolate and red fruit!
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Saccharomyces Genome Database @yeastgenome.bsky.social · 02/03/2026
We are deeply saddened to share the news of the passing of David Botstein, a towering figure in modern #genetics and a foundational force behind SGD. www.yeastgenome.org/blog/in-memo... #yeast #modelOrganism
a headshot of David Botstein
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Pfliegler Lab at University of Debrecen @pflieglerlab.bsky.social · 01/03/2026
www.biorxiv.org/content/10.6... comparison of commercially available #Saccharomyces #mead yeasts. Our new preprint w/ @balintnemeth.bsky.social and colleagues compares 13 mead #yeast strains for their phenotype, genome, and presents data on metabolites in experimental mead fermentations.
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Pfliegler Lab at University of Debrecen @pflieglerlab.bsky.social · 26/02/2026
Yesterday at Rio Botanic Garden :)
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Pfliegler Lab at University of Debrecen @pflieglerlab.bsky.social · 25/02/2026
I arrived to the Federal University of Rio de Janeiro to André dos Santos' lab, meeting with students incl. @raquelvicente.bsky.social who visited us in Debrecen a year ago! Excited to give a course on #yeast genomics :) and present on our results in this enchanting city!
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Gilles FISCHER @gillesfischer.bsky.social · 21/02/2026
📢 In our new study, we identify the predominant natural route to polyploidy in S. cerevisiae. Stepwise polyploidization operates through iterative cycles of events termed "Sporulate–Endoreplicate–Mate" (SEM). Really excellent work led by @cintiagomez.bsky.social 👏 www.biorxiv.org/content/10.6...
biorxiv.org
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Pfliegler Lab at University of Debrecen @pflieglerlab.bsky.social · 18/02/2026
With a 2019 Fuller's vintage ale, celebrating the acceptance of a paper w/ @alexandraimre.bsky.social that we started working on in 2019. So happy to have saved this for all these years! What a long journey! The topic is #yeast probiotics, will be online very soon!
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Pfliegler Lab at University of Debrecen @pflieglerlab.bsky.social · 18/02/2026
"Ancient co-option of LTR retrotransposons as yeast centromeres" #yeastevolution
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Isheng Jason Tsai @ishengtsai.bsky.social · 16/02/2026
With @litinice.bsky.social, we built a haploid resource from 33 wild Taiwanese Saccharomyces cerevisiae strains — including some of the most genetically divergent Asian lineages — to bring natural yeast diversity into a genetically tractable framework. www.biorxiv.org/content/10.6...
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Pfliegler Lab at University of Debrecen @pflieglerlab.bsky.social · 05/02/2026
Found this almost artistic bottle, probably close to 100 years old, at our Department! Still in great shape and the Congo Red is still vibrant red inside:) this substance is often used in cell will stress experiments with #yeast
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Pfliegler Lab at University of Debrecen @pflieglerlab.bsky.social · 28/01/2026
#yeastevolution
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Pfliegler Lab at University of Debrecen @pflieglerlab.bsky.social · 23/01/2026
We welcome @ola-gorzynska.bsky.social from Wroclaw Medical University in Debrecen! Ola will spend a month in our lab working on clinical #Saccharomyces yeast genomes. 54 Polish isolates' sequences just arrived, so the project starts w/ Andi Harmath and @balintnemeth.bsky.social ! Good luck, Ola!
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Ammar Abdalrahem @ammarabdalrahem.bsky.social · 15/01/2026
1/🧵 Major milestone unlocked for mycology! 🍄 We just published a massive genomic resource in 𝐒𝐜𝐢𝐞𝐧𝐭𝐢𝐟𝐢𝐜 𝐃𝐚𝐭𝐚, releasing 2,695 complete circular mitochondrial species assembled from public data This single dataset nearly 𝐓𝐑𝐈𝐏𝐋𝐄𝐒 📈the known mitochondrial diversity of the Kingdom Fungi rdcu.be/eYZ2h
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Dr. Danny Haelewaters 🏳️‍🌈🍄🪰🦇🔬🧬 @dhaelewa.bsky.social · 12/01/2026
New paper! Here we present the history, geographical distribution, and structure of organizations in #mycology across #Europe, as well as their activities—including journals, magazines, meetings, educational initiatives, and #citizenscience projects. doi.org/10.1007/s105... #FunDive
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Pfliegler Lab at University of Debrecen @pflieglerlab.bsky.social · 11/01/2026
My first ever hairy tofu, 毛豆腐. Made with a Mucor species starter culture I ordered from Ebay. After 24 hours it was ready and I stir-fried it, the taste was cheese-like and pleasant!
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Pfliegler Lab at University of Debrecen @pflieglerlab.bsky.social · 09/01/2026
Repeated losses of self-fertility shaped heterozygosity and polyploidy in #yeastevolution
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Yeast Journal @yeast-journal.bsky.social · 05/01/2026
The new year has just started and we are happy to share the news that the new issue of #Yeast (Volume 42, Number 12, December 2025) is finally out!!! 😀😀😀 This issue includes two research articles and two reviews. You can browse it at this link: onlinelibrary.wiley.com/toc/10970061...
onlinelibrary.wiley.com
Happy 40th birthday Yeast: Yeast: Vol 42, No 12
Yeast is a microbiology journal for research in the rapidly moving field of yeast biology. We publish the most significant developments in unicellular fungi.
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liti_nice @litinice.bsky.social · 02/01/2026
Here is our first publication of 2026 which is the first article of a special issue that mark the journal 40 anniversary - happy new year to all the #yeast community
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Pfliegler Lab at University of Debrecen @pflieglerlab.bsky.social · 23/12/2025
imafungus.pensoft.net/article/1723... Global population genomics redefines domestication and clinical diversity in the Aspergillus flavus–oryzae complex. Our new paper w/ @balintnemeth.bsky.social finally online in IMA Fungus! This has been a long journey, the first idea of this global phylogeny...
imafungus.pensoft.net
Global population genomics redefines domestication and clinical diversity in the Aspergillus flavus–oryzae complex
Aspergillus flavus is a globally important human pathogen and agricultural contaminant, while its domesticated relative A. oryzae is widely used in food fermentation and biotechnology. Despite their importance, the evolutionary relationship, population structure and domestication history of these fungi remain unresolved. Here, we present the first global population genomic analysis of 639 A. flavus and A. oryzae isolates from clinical, environmental and food-fermentation sources across multiple continents. Our analyses reveal a complex evolutionary landscape comprising well-separated clades interspersed with highly admixed mosaic groups and potential evidence for multiple independent domestication events giving rise to A. oryzae. Clinical A. flavus isolates are distributed across several clades and mosaic groups, some overlapping with fermentation strains, highlighting an apparent role of domestication and admixture in shaping pathogen diversity. These results challenge current species boundaries and provide a framework for understanding evolutionary history, taxonomy and pangenomic architecture in these fungi, with broad implications for pathogenicity, food safety, biocontrol and metagenomic surveillance.
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Pfliegler Lab at University of Debrecen @pflieglerlab.bsky.social · 20/12/2025
"Despite their rarity, yeasts likely play disproportionate roles in nutrient cycling, plant growth, and host interactions". A global synthesis of #yeast in microbiomes
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Pfliegler Lab at University of Debrecen @pflieglerlab.bsky.social · 19/12/2025
An incredible agART - agar art from PhD students Andrea Harmath and @balintnemeth.bsky.social, depciting our lab's activities in #yeast research from fermentations to bioinformatics :)
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Saccharomyces Genome Database @yeastgenome.bsky.social · 12/12/2025
As many of us 🎁 things up for the year, make sure all your ℹ️'s are dotted- and all your #yeast emojis are downloaded! If you haven't yet, make sure to add the emojyeast collection to all your 📱💻🖥️⌚️ mayaschuldiner.wixsite.com/schuldinerla... Thanks to the amazing Schuldiner lab for these!
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Pfliegler Lab at University of Debrecen @pflieglerlab.bsky.social · 12/12/2025
The discovery and patterns of the underlying long-standing mild-effect mutator alleles in S. cerevisiae populations. #Saccharomyces #YeastEvolution
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