Reposted by Ammar AbdalrahemPeer Community In @peercommunityin.bsky.social · 03/09/2026How did PCI come about? Traditional scientific publishing faces many challenges, including publication costs. “Free to read and publish” is a design principle for Peer Community In: access to scientific evaluation should not depend on the ability to pay. 066
Reposted by Ammar AbdalrahemCecile Lorrain @ccilelorrain.bsky.social · 31/08/2026Now accepted: Haplotype-phased assemblies of the two poplar rust fungi species: Melampsora larici-populina and Melampsora allii-populina academic.oup.com/g3journal/ar...academic.oup.comHaplotype-phased assemblies of the two poplar rust fungi species: Melampsora larici-populina and Melampsora allii-populinaAbstract. Dikaryotic rust fungi maintain two distinct haploid nuclei for most of their life cycle, making their large, repeat-rich genomes difficult to ass 22116
Ammar Abdalrahem @ammarabdalrahem.bsky.social · 04/08/2026Check out my interview about my PhD project, featured in the Arab and Near East Plant Protection Bulletin! 🌿 Special thanks to Prof. Ibrahim Al-Jboory for this great opportunity. Read it here: asplantprotection.org/en/issue-97-... 000
Ammar Abdalrahem @ammarabdalrahem.bsky.social · 01/07/2026Happy to be at #SMBE2026 honored to give a talk about our research on fungal mitochondria 🍄. The energy here in Copenhagen is just incredible 🙌 292
Reposted by Ammar AbdalrahemThomas Lenormand @thomaslenormand.bsky.social · 29/06/2026🚨Interested in #evolutionary #genomics and #popgen #theory? My lab just opened a 1+ year #postdoc position to work on sex chromosome dosage compensation. At #CEFE Montpellier 👉 bit.ly/4eMWDIh Informal enquiries welcome to me🙂 or Paul Saunders and Sylvain Glémin at #SMBE2026 Thanks for sharing! 0917
Ammar Abdalrahem @ammarabdalrahem.bsky.social · 19/06/2026Tickets to Copenhagen are booked! I’m going to #SMBE2026 to talk about our work on fungal mitogenome diversity 🍄 📄 Read the paper: rdcu.be/fpjru Looking forward to catching up and grabbing a coffee during the breaks ☕ 💬 052
Reposted by Ammar AbdalrahemJana Sperschneider @jsperschneider.bsky.social · 07/05/2026📢 EffectorGeneP is finally here! Stop missing small, single-exon or orphan genes from your favourite pathogen genome. Current tools only annotate 15%-78% of effector genes, EffectorGeneP finds 95% - including the large AvrSr26 family in stem rust. #Bioinformatics 📖 www.biorxiv.org/content/10.6...biorxiv.org 04328
Reposted by Ammar AbdalrahemCecile Lorrain @ccilelorrain.bsky.social · 03/05/2026New preprint out! We generated haplotype-phased genome assemblies for two poplar rust fungi. These resources open new opportunities to explore rust genome architecture, haplotype diversity, and TE-driven evolution. www.biorxiv.org/content/10.6...biorxiv.org 12415
Reposted by Ammar AbdalrahemRyan Cook @ryancook94.bsky.social · 14/04/2026Really happy to have played a small part in this cool piece of work led by @guido-valverde.bsky.social and @msabrysarhan.bsky.social. We characterised S. pyogenes in a pre-Columbian Bolivian mummy (suggesting circulation before European contact) #VivaBolivianMummies www.nature.com/articles/s41...nature.comAn ancient genome of Streptococcus pyogenes from a pre-Columbian Bolivian mummy - Nature CommunicationsStreptococcus pyogenes is a human pathogen responsible for a range of diseases. Here, the authors reconstruct an ancient S. pyogenes genome from a pre-Columbian Bolivian mummy, supporting that the pat... 11510
Reposted by Ammar AbdalrahemCecile Lorrain @ccilelorrain.bsky.social · 15/04/2026Thrilled to share our paper now out in Nature Plants 🎉 We developed a genome-host association (GHA) approach to study pathogen adaptation directly from field metadata by using the originating host cultivar as phenotype. www.nature.com/articles/s41...nature.comGenome–host association mapping reveals wheat pathogen genes involved in host specialization - Nature PlantsThis study introduces genome–host association (GHA), leveraging natural epidemics to map the genetic landscape of host adaptation in the pathogen Zymoseptoria tritici. Applied to 832 wheat fungal stra... 35231
Reposted by Ammar AbdalrahemPascal Frey @pascal-frey.bsky.social · 21/03/2026Happy International Day of Forests! #IntlForestDay 063
Reposted by Ammar AbdalrahemPeer Community In @peercommunityin.bsky.social · 20/02/2026We are thrilled to announce Paolo Crosetto's presentation titled "The Drain of Scientific Publishing: Why Publishing Has Become a Challenge for Science and How It Can Be Improved" in our upcoming PCI Webinar on March 19th at 4 PM (GMT+1)!! 🤩 To learn more and sign up, please visit buff.ly/bxYWPCzpeercommunityin.orgPCI Webinar Series - Peer Community InThe PCI webinar series is a series of seminars on research practices, publication practices, evaluation, scientific integrity, meta-research, organised by Peer Community In 074
Reposted by Ammar AbdalrahemDrop Site @dropsitenews.com · 20/01/2026⭕️ A six-month-old baby has died from freezing conditions in Gaza City, a direct result of Israel’s blockade and deliberate restriction of aid. This brings the number of children who have died from the cold since the beginning of the winter season to nine. 🎥 Video by Hamza Qraiqea 57950
Ammar Abdalrahem @ammarabdalrahem.bsky.social · 15/01/20261/🧵 Major milestone unlocked for mycology! 🍄 We just published a massive genomic resource in 𝐒𝐜𝐢𝐞𝐧𝐭𝐢𝐟𝐢𝐜 𝐃𝐚𝐭𝐚, releasing 2,695 complete circular mitochondrial species assembled from public data This single dataset nearly 𝐓𝐑𝐈𝐏𝐋𝐄𝐒 📈the known mitochondrial diversity of the Kingdom Fungi rdcu.be/eYZ2h 24521
Reposted by Ammar AbdalrahemThe MRC Centre for Medical Mycology @mrccmm.bsky.social · 17/12/2025CMM International Fund for Global Advancement of Medical Mycology! Thanks to everyone who joined our recent webinar and Q&A session. If you missed it, find our more about the fund and application process here: www.exeter.ac.uk/research/med... 122
Reposted by Ammar AbdalrahemPascal Frey @pascal-frey.bsky.social · 18/11/2025#E-PoPP2025: Fabien Halkett @umr-iam.bsky.social on population genetics of partially clonal organisms doi.org/10.1101/2025... 073
Reposted by Ammar AbdalrahemPascal Frey @pascal-frey.bsky.social · 18/11/2025#E-PoPP2025: @ammarabdalrahem.bsky.social @umr-iam.bsky.social on #evolutionary #ecology of #asexual lineages of the #poplar #rust #fungus 🌳🍄 #ForestHealth 074
Reposted by Ammar AbdalrahemPascal Frey @pascal-frey.bsky.social · 22/10/2025PhDone! Congratulations Dr. @ammarabdalrahem.bsky.social! 👏👏👏👨🎓🎓 A big thank you to @tatianagiraud.bsky.social, @sofarndhnd.bsky.social & @wheatpath.bsky.social for being on the PhD jury! 📸 @mireiagoga.bsky.social 3335
Reposted by Ammar AbdalrahemNature Portfolio @natureportfolio.nature.com · 30/09/2025In a Consensus Statement in Nature Microbiology, a consortium of #microbiome scientists discusses current sequencing data sharing policies and proposes the use of a Data Reuse Information tag to promote equitable and collaborative data sharing. go.nature.com/4o1Gl1f 🧪 11911
Ammar Abdalrahem @ammarabdalrahem.bsky.social · 27/09/2025Glad to be part of the Data Reuse Consortium behind this @natmicrobiol.nature.com paper. Soon, ENA/NCBI submissions will include a Data Reuse Identifier (DRI) — like a DOI for papers. If you use microbiome sequencing data 🦠🧫🔬🧑💻, you need to read this 👇 www.nature.com/articles/s41...nature.comA roadmap for equitable reuse of public microbiome data - Nature MicrobiologyIn this Consensus Statement, a consortium of microbiome scientists discuss current sequencing data sharing policies and propose the use of a Data Reuse Information (DRI) tag to promote equitable and collaborative data sharing. 020
Reposted by Ammar AbdalrahemUMR IAM @umr-iam.bsky.social · 19/09/2025#OurFridaySeminar: @ammarabdalrahem.bsky.social presents his new results on #functional and #evolutionary comparison of #sexual and asexual lineages of #poplar #rust 073
Reposted by Ammar AbdalrahemHanna Johannesson @hannajohannesson.bsky.social · 14/08/2025It started as a master thesis project by Markus Hiltunen, and ended up in this publication in Science. What a fun project to work on! Thanks Markus - and all other coauthors, too, for a great team work! www.science.org/doi/10.1126/...science.orgEarly germline sequestration in a basidiomycete fungusIn sexual organisms, inheritance of new mutations is highly dependent on the timing of germline definition. Here, we used the fairy ring–forming fungus Marasmius oreades to challenge the general assum... 25025
Reposted by Ammar AbdalrahemSociety for the Study of Evolution @sse-evolution.bsky.social · 29/07/2025This Friday! RSVP today! 082
Reposted by Ammar AbdalrahemCurrent Biology @currentbiology.bsky.social · 12/06/2025The scope of #fungi #biodiversity is only beginning to be fathomed. Every day almost ten new species are described. 🍄🤯 David Hibbett László Nagy and Henrik Nilsson introduce the fungal tree of life. www.cell.com/current-biol... 07843
Reposted by Ammar AbdalrahemUMR IAM @umr-iam.bsky.social · 06/06/2025#OurFridaySeminar: @sebbyrust.bsky.social makes an update on #Rust #fungi #genomics 0105
Reposted by Ammar AbdalrahemElise A. Lucotte @elise-lucotte.bsky.social · 03/06/2025Our new paper is out! We observed a loss of function in mating compatibility for HD genes for the first time in basidiomycete fungi, and new evolutionary strata in the absence of sexually antagonistic selection! @tatianagiraud.bsky.social More details here 👉 www.nature.com/articles/s41...nature.comRepeated loss of function at HD mating-type genes and of recombination in anther-smut fungi - Nature CommunicationsBasidiomycete fungi typically have two mating-type loci located on different chromosomes. Here, Lucotte et al. report the convergent loss-of-function of mating-type genes across several species of phy... 32513
Reposted by Ammar AbdalrahemMireia Gómez-Gallego @mireiagoga.bsky.social · 20/05/2025Pascal Frey @pascal-frey.bsky.social from @umr-iam.bsky.social is the keynote speaker on the rapid evolution of Melampsora larici-populina in France #iufro2025CH 0105
Ammar Abdalrahem @ammarabdalrahem.bsky.social · 08/05/2025Hi everyone! This is my first post on 🦋, and I took this photo with my phone to join the #EvoPhoto2025 competition. 𝐅𝐢𝐟𝐭𝐲 𝐒𝐥𝐢𝐜𝐞𝐬 𝐨𝐟 𝐄𝐯𝐨𝐥𝐮𝐭𝐢𝐨𝐧 From wild ancestors to supermarket shelves🍎🍏😋 #apple #evolution #photo #phd @ssegrad.bsky.social 1130