Reposted by Pedro C. JungerNico Schuck @nicoschuck.bsky.social · 21/09/20262023: 8,039 proposals 2024: 10,360 proposals 2025: 17,066 proposals 2026: 21,627 proposals Something's gotta give 210954
Reposted by Pedro C. JungerJohn Spear @spearmicrobe.bsky.social · 04/09/2026Microbial Diversity 2026 @mblscience.bsky.social was outstanding this year! If you’d like to join us next year, apply in late January, early February and spread the word. www.youtube.com/watch?v=7VUY...youtube.comFocus on: Microbial Diversity at Marine Biological LaboratoryYouTube video by Marine Biological Laboratory 01110
Reposted by Pedro C. JungerDr. Grégoire DUBOIS @gregoiredubois.bsky.social · 30/07/2026Papers with open peer-review reports are less likely to be retracted www.nature.com/articles/d41...nature.comPapers with open peer-review reports are less likely to be retractedResearchers say that transparent publishing practices could be associated with research quality, but more evidence is needed. 011
Reposted by Pedro C. JungerBork Group at EMBL Heidelberg @borklab.bsky.social · 29/07/2026Led by Lucas Ustick, who has a longer write-up here: www.linkedin.com/posts/lucas-... Preprint: www.biorxiv.org/content/10.6... (5/5)linkedin.comPlanetary structure and drivers of diazotroph communities reveal key reservoirs of nitrogen-fixation potential | Lucas UstickI am very excited to share our preprint on NFixPlanet, a resource and planet wide analysis of diazotrophy. Releasing this preprint feels bittersweet, as it is my first manuscript since Peer’s passing... 0104
Reposted by Pedro C. JungerFabien Burki @fburki.bsky.social · 26/07/2026Very happy something like this is now available. In protist diversity research we use the rDNA extensively, but I for one doesn't know enough about it's structure, variation, and implications www.annualreviews.org/content/jour...annualreviews.orgOrganization of Ribosomal RNA Genes in EukaryotesIn eukaryotes, ribosomal RNA genes (rDNA) encode the major ribosomal RNA molecules and are typically organized into a distinctive genomic structure involving tandem repetition of a polycistronic codin... 0369
Reposted by Pedro C. JungerAndy Scollick @andyscollick.bsky.social · 25/07/2026French authorities evacuated thousands of people from suburbs near Bordeaux today as wildfires in areas around the city showed no signs of abating. (RTÉ News)rte.ieLevel of wildfires 'never been seen before' - French PMFrench authorities evacuated thousands of people from suburbs near Bordeaux today as wildfires in areas around the city showed no signs of abating. 02215
Reposted by Pedro C. JungerThe Copernicus Marine Service @copernicusmarine.bsky.social · 23/07/2026MyOcean Health is a free platform that transforms ocean observations into clear, interactive indicators of ocean health, making it possible for anyone to track changes to the planet's largest life-support system: bit.ly/45f10Y6 📹 Simon van Gennip, @mercatorocean.bsky.social 023
Reposted by Pedro C. JungerSteven Robbins @stevenjrobbins.bsky.social · 22/07/2026It's out! Excited to present the Great Barrier Reef Microbial Genomes Database (GBR-MGD), a comprehensive DB of 1000s of high-quality prokaryote, virus, plasmid, and chromosome-level eukaryote MAGs using Nanopore long reads. Subthreads incoming. Please share widely. 🙂 www.nature.com/articles/s41...nature.comThe planktonic microbiome of the Great Barrier Reef - NatureThe Great Barrier Reef Microbial Genomes Database compiles prokaryotic, viral and eukaryotic genomes from seawater collected from the Great Barrier Reef, providing a rich resource for the study of mar... 88342
Reposted by Pedro C. JungerAntonio Vecoli (@tonyveco on X) @tonyveco.bsky.social · 28/06/2026🔴⚠️🌡️🌊The unprecedented #heatwave over #Europe is bringing its effects also to the Mediterranean Sea. In the last few days the #Copernicus Sea Surface Temperature has rapidly increased and the latest anomaly data exceed 8°C ⬇️SST daily anomaly on 27 June 2026 #climateemergency 13249133
Reposted by Pedro C. JungerScience Magazine @science.org · 26/06/2026Battling darkness and cold, researchers on a drifting laboratory will probe the biology of the Arctic Ocean. Learn more: scim.ag/4oSliji 54510
Reposted by Pedro C. JungerNils Gilman @nilsgilman.bsky.social · 24/06/2026Yesterday was likely the hottest day in France since the last interglacial (125,000 years ago). There is going to be some terrible human news from this… #NothingToSeeHere #MoveRightAlong 9277134
Reposted by Pedro C. JungerIPBES @ipbes.net · 23/06/2026The @unuinweh.bsky.social has published the Environmental Cost of AI’s Energy Use. Carbon, Water and Land Footprints. The report analyses the impact of AI beyond carbon footprint and calls for a responsible AI ecosystem 🔗 Learn more: ow.ly/fmjR50Zf38y 02219
Reposted by Pedro C. JungerDr. Grégoire DUBOIS @gregoiredubois.bsky.social · 19/06/2026Each year, the environmental footprint of the world's richest 10% costs the planet—and society—up to $5.7 trillion www.nature.com/articles/s44...nature.comEnvironmental damages of the top ten percent consumers exceed global climate and biodiversity funding gaps - Communications SustainabilityBiodiversity loss and carbon emissions dominate the damages caused by the top ten percent of consumers, with the highest bills seen in wealthier countries, according to a study monetizing this group’s... 021
Reposted by Pedro C. JungerAnders Lanzén @lanzen.bsky.social · 15/06/2026Did you think that filtering water with 0.2 μm pore size filters catches all the bacteria? Think again! And join us a we take a look at the smallest of the small, across three of the legenday seven seas of yore (Bay of Biscay, Mediterranean and the Red Sea) onlinelibrary.wiley.com/doi/abs/10.1...onlinelibrary.wiley.comThe Elusive Fraction of Marine Plankton Diversity: Size, Abundance and Taxonomic Composition of 0.2 μm‐Filterable Prokaryotes Across Three Contrasting Coastal EnvironmentsThe existence of prokaryotes escaping filtration through 0.2-μm filters has been known for decades. Such ‘filterable’ prokaryotes (hereafter ‘FP’) might include true ultra-small groups (i.e., ultrami... 272
Reposted by Pedro C. JungerOBIS @obis.org · 07/06/2026📘 The OBIS Manual has just received a major update, with new content and a redesigned interface. It now includes Tutorials & Notebooks, features a direct link to report an issue, and a one-click PDF export of the latest available version. 👉 Check out the new OBIS Manual manual.obis.org 051
Reposted by Pedro C. JungerEarth BioGenome Project 🌍 @ebpgenome.bsky.social · 04/06/2026🧬 Diatoms are an extraordinarily diverse group of photosynthetic organisms, with tens of thousands of described species. Yet technical challenges still limit large-scale diatom genome production. EBP projects and biodiversity genomics R&D teams are working to solve them. 🌊🔬 #Diatoms #Biodiversity 36924
Pedro C. Junger @pcjungers.bsky.social · 04/06/2026Looking forward to visiting @mioceanologie.bsky.social for the first time to share part of my postdoctoral research at @ibensens.bsky.social. Come along if you are around Marseille! 🌎 🌊⛵🦠🧬 040
Reposted by Pedro C. JungerMicrobiome Research Lab, ETH Zürich @microbiomeresearch.bsky.social · 25/02/2026We are thrilled to announce the newest study from our lab (and great collaborators) is out now in @nature.com We show that #coral #microbes are untapped "biosynthetic reservoirs", full of unique natural products. doi.org/10.1038/s415...doi.orgCoral microbiomes as reservoirs of unknown genomic and biosynthetic diversity - NatureReconstructing microbial genomes from 820 reef-building corals collected at 99 reefs across 32 islands throughout the Pacific Ocean highlights the importance of conserving coral reefs as vital reservo... 0116
Reposted by Pedro C. JungerBejaLabTechnion @bejalab.bsky.social · 11/02/2026Apusomonad rhodopsins: A new family of ultraviolet to blue light–absorbing rhodopsin channels www.pnas.org/doi/full/10....pnas.orgApusomonad rhodopsins: A new family of ultraviolet to blue light–absorbing rhodopsin channels | PNASApusomonads are sediment-dwelling bacterivorous protists that are sister to all Opisthokonta. They have been found to show a negative phototactic r... 1116
Reposted by Pedro C. JungerEMBL @embl.org · 09/02/2026In the largest study of its kind, scientists in the Bork Group at EMBL have found that a small subset of microbes can carry and transfer genes across disparate habitats, creating a planet-wide, interconnected network of microbiomes 🌍 🦠 🔗 Read more here: www.embl.org/news/science... 23414
Reposted by Pedro C. JungerMichael Cunliffe 🏳️🌈 @marinemicrobes.bsky.social · 02/02/2026Excited to co-chair with @clareostle.bsky.social our #WCMB2026 session Plankton Biodiversity Observation for Ocean Health in Bruges (17–20 Nov 2026). We invite abstracts on all approaches to monitoring marine plankton. Deadline: 17 March 2026 (23:59 CET). 🌊🔬💙 @thembauk.bsky.social 074
Reposted by Pedro C. JungerCameron Thrash @jcamthrash.bsky.social · 20/01/2026Ecological Processes Shaping Marine Microbial Assemblages Diverge Between Equatorial and Temperate Time-Series onlinelibrary.wiley.com/doi/10.1111/... #jcampubs 🌊 082
Reposted by Pedro C. JungerDaniel Podlesny @podlesny.bsky.social · 02/12/2025We're excited to release metaTraits.embl.de! 🦠 Interactively explore 140+ 𝗺𝗶𝗰𝗿𝗼𝗯𝗶𝗮𝗹 𝗽𝗵𝗲𝗻𝗼𝘁𝘆𝗽𝗶𝗰 𝘁𝗿𝗮𝗶𝘁𝘀, harmonized & integrated from culture-derived collections 🔬 & genome-based predictions 🧬 for >2M MAGs & genomes. Publication at NAR: doi.org/10.1093/nar/... @narjournal.bsky.social #microsky 🧵 1/8 13929
Reposted by Pedro C. JungerCameron Thrash @jcamthrash.bsky.social · 22/01/2026Our latest. Led by the very talented @ahoiching.bsky.social Cell cycle dysregulation of globally important SAR11 bacteria resulting from environmental perturbation www.nature.com/articles/s41... #jcampubs 🌊nature.comCell cycle dysregulation of globally important SAR11 bacteria resulting from environmental perturbation - Nature MicrobiologyWithout key cell cycle control genes, SAR11 cells experience aneuploidy and growth inhibition when exposed to changes in nutrients, carbon sources or temperature stress, a vulnerability that may repre... 35333
Reposted by Pedro C. JungerEuropean node of the Ocean Biodiversity Information System @eurobis.bsky.social · 21/01/2026🌊 Calling marine sites worldwide! Join eDNA Expeditions (2026-2028), a project using #eDNA to support local marine biodiversity monitoring & boost global ocean knowledge. ✅Apply by 15 Feb ☑️ Kits, training & support 👉 emodnet.ec.europa.eu/en/contribut... @vliz.be @emodnet.bsky.social @obis.org 141
Reposted by Pedro C. JungerA. Murat Eren (Meren) @merenbey.bsky.social · 20/01/2026We just released #anvio v9, "eunice" 🎉 This version represents over 2,000 changes in the codebase since v8, increasing the total number of programs in the anvi'o ecosystem to 176. Read the release notes: github.com/merenlab/anv... Visit our up-to-date web page: anvio.org 27134
Reposted by Pedro C. JungerLukas Malfertheiner @lukasmalf.bsky.social · 16/01/2026Closely related microbes tend to live in similar communities across Earth’s environments. We call this pattern community conservatism - extending established ecological patterns to the microbial world. 🧬🌍 #MicrobialEcology #Evolution Read the full article here: doi.org/10.1038/s415... 04615
Pedro C. Junger @pcjungers.bsky.social · 16/01/2026I'm thrilled to share that this work has just been published: onlinelibrary.wiley.com/doi/10.1111/... We compared to contrasting observatories: 🌴 ☀️ Equatorial Atlantic (EAMO, 6°S), one of the first in low-latitudes 🍂 🌸 A well-studied temperate site (BBMO, 41°N) in the Mediterranean Sea 🧵⬇️onlinelibrary.wiley.comEcological Processes Shaping Marine Microbial Assemblages Diverge Between Equatorial and Temperate Time‐SeriesMarine microbial communities are structured by a complex interplay of deterministic and stochastic processes, yet how these vary across latitudes remains poorly understood. Most long-term microbial o... 1113
Reposted by Pedro C. JungerNoah Fierer @noahfierer.bsky.social · 06/01/2026New paper up - inspired by the periodic table of the elements, we attempted to organize bacterial diversity in genome-inferred trait space academic.oup.com/ismej/advanc...academic.oup.comConstructing a “periodic table” of bacteria to map diversity in trait spaceAbstract. Despite an ever-expanding number of bacterial taxa being discovered, many of these taxa remain uncharacterized with unknown traits and environmen 35421
Reposted by Pedro C. JungerFlorian Trigodet @floriantrigodet.bsky.social · 06/01/2026Now published in Nature Biotechnology: go.nature.com/44P7nSm If you missed it, the TL;DR is in my April thread belowgo.nature.comTroubleshooting common errors in assemblies of long-read metagenomes - Nature BiotechnologyLong-read sequence assemblies from metagenomes contain frequent errors. 15936
Pedro C. Junger @pcjungers.bsky.social · 05/01/2026nature.comPoint of no returns: researchers are crossing a threshold in the fight for fundingWith so little money to go round, the costs of competing for grants can exceed what the grants are worth. When that happens, nobody wins. 010
Reposted by Pedro C. JungerLaura GomezConsarnau @lauraconsarnau.bsky.social · 22/12/2025Microbial rhodopsins are everywhere in the surface ocean, but were assumed to play a role mainly when nutrients are scarce. Our new study reveals unexpected rhodopsin dynamics tightly linked to phytoplankton blooms. 2188
Reposted by Pedro C. JungerMar Benavides @marbenavides.bsky.social · 17/12/2025"By 2030, our goal is for microbial metrics to stand alongside those of charismatic megafauna in every major habitat monitoring and restoration plan, signalling a profound shift in how biodiversity is measured, valued and protected" www.nature.com/articles/s41... @noc.ac.uknature.comLaunching the IUCN Microbial Conservation Specialist Group as a global safeguard for microbial biodiversity - Nature MicrobiologyNature Microbiology - Launching the IUCN Microbial Conservation Specialist Group as a global safeguard for microbial biodiversity 064
Reposted by Pedro C. JungerSarah J Tucker @sjtucker.bsky.social · 05/12/2025I am happy to share that our data descriptor on the Hawaiʻi Diel Sampling is now published! 🌊🦠https://www.nature.com/articles/s41597-025-06166-3 Every 1.5 hours for 48 hours, we collected ocean microbes from within and adjacent to Kāneʻohe Bay, Oʻahu, Hawaiʻi and produced a multi-omics dataset.nature.comA high-resolution diel survey of surface ocean metagenomes, metatranscriptomes, and transfer RNA transcripts - Scientific DataScientific Data - A high-resolution diel survey of surface ocean metagenomes, metatranscriptomes, and transfer RNA transcripts 1125
Reposted by Pedro C. JungerMax Planck Institute for Marine Microbiology @mpimarinemicrobio.bsky.social · 02/12/2025🔊 APPLY NOW for our #MarMic #MSc/#PhD program! Come to #Bremen and take an interdisciplinary approach to #marine #microbiology, #molecularbiology, #biochemistry, #evolution and more. ⏳ Open until Feb 28 2026 ➡ marmic.mpg.de #graduatestudents #marinescience #sciencecareer #IMPRS @maxplanck.de 11416
Reposted by Pedro C. JungerSociété Phycologique de France @phycologique.bsky.social · 02/12/2025@pcjungers.bsky.social démarre en présentant la diversité des algues arctiques pendant les étapes précoces de formation de la banquise #JSPF2025. Les groupes taxonomiques dominants varient pendant les différentes étapes de la formation de la banquise! 043
Reposted by Pedro C. JungerZack Labe @zacklabe.com · 29/11/2025The extent of global sea ice cover is more than 3 million square kilometers below the 1981-2010 average. This is the 2nd lowest on record for this date over the satellite-era. Data from nsidc.org/data/seaice_... 111548
Reposted by Pedro C. JungerNature Microbiology @natmicrobiol.nature.com · 28/11/2025#NatMicroPicks A new protist with remnants of ancient mitochondrial DNA 🧬🦠 The eukaryotic tree of life grows with the addition Solarion arienae - a unique and peculiar protist species #MicroSky www.nature.com/articles/s41...nature.comRare microbial relict sheds light on an ancient eukaryotic supergroup - NatureThe discovery of an unusual protist named Solarion arienae, which has a mitochondrial genome with some intriguing features, provides insight into the early radiation of eukaryotic groups. 0217
Pedro C. Junger @pcjungers.bsky.social · 21/11/2025I attended the Anvi'o workshop last March, and I highly recommend it. Registration for the 2026 edition is now open: 020
Reposted by Pedro C. JungerMARCO-BOLO project @marco-bolo.bsky.social · 20/11/2025📢 Save the Date: Biodiversity Monitoring Week is coming! #BioMonWeek2026 📅4-8 May 📍Montpellier (FR) The new European forum for cooperation and innovation in biodiversity monitoring, gathering researchers, practitioners, policymakers, private sector & students. Don't miss out! #BiodiversityData 084
Reposted by Pedro C. Junger🧬Jacob L Steenwyk @jlsteenwyk.bsky.social · 13/11/2025Just gonna put this here for now www.science.org/doi/10.1126/... bsky.app/profile/jlst...science.orgIntegrative phylogenomics positions sponges at the root of the animal treeDetermining whether sponges or ctenophores root the animal tree has important implications for understanding early animal evolution. Here, we examined support for these competing hypotheses by constru... 1312052
Reposted by Pedro C. JungerA. Murat Eren (Meren) @merenbey.bsky.social · 16/11/2025Starting this week, I set aside one hour each week to meet ECRs outside my group who want to discuss career development, mentorship, or any non-technical professional questions. Here is a blog that explains my motivation for this and how to schedule a meeting: merenlab.org/2025/11/16/E...merenlab.orgECR connection: Meet Meren when you need toA means for ECRs to get advice from a senior scientist outside of their support network 15330
Reposted by Pedro C. JungerMike McCormick @geomikerobe.bsky.social · 08/11/2025Diving through the purple sulfur bacteria layer of Fayetteville Green Lake with our ROV last month. This is the most intense density of PSB that I've seen in many years! 513244
Reposted by Pedro C. JungerCameron Thrash @jcamthrash.bsky.social · 14/11/2025Conserved genetic markers reveal widespread diatom sexual reproduction in the global ocean www.nature.com/articles/s41... #jcampubs 🌊nature.comConserved genetic markers reveal widespread diatom sexual reproduction in the global ocean - Nature CommunicationsDiatoms dominate the oceans, yet sexual reproduction - key to bloom dynamics and species evolvability - is rarely observed. Using a lab-to-field approach, this study presents conserved markers applica... 0137
Reposted by Pedro C. JungerMARCO-BOLO project @marco-bolo.bsky.social · 05/11/2025Europe’s waters are under pressure - from rivers to coasts to the deep sea💧 Join our campaign and help protect life in The Waters We Share! 💙 See what you can do: marcobolo-project.eu/the-waters-w... #TheWatersWeShare #LifeBeneathTheWaves #KnowOurWatersBetter #AquaticPersonalityQuiz 0129
Reposted by Pedro C. JungerCameron Thrash @jcamthrash.bsky.social · 04/11/2025Underestimated input of terrestrial dissolved organic carbon to the ocean www.pnas.org/doi/abs/10.1... #jcampubs 🌊pnas.orgUnderestimated input of terrestrial dissolved organic carbon to the ocean | PNASThe contribution of terrestrial dissolved organic matter (DOM) to the ocean has been an enigma for decades. Tracking terrestrial DOM in the ocean h... 0157
Reposted by Pedro C. JungerSebastian Schmidt @tsbschm.bsky.social · 31/10/2025Great to see this finally published! Metalog: curated and harmonised contextual data for global metagenomics samples now out in @narjournal.bsky.social academic.oup.com/nar/advance-...academic.oup.comMetalog: curated and harmonised contextual data for global metagenomics samplesAbstract. Metagenomic sequencing enables the in-depth study of microbes and their functions in humans, animals, and the environment. While sequencing data 15738
Reposted by Pedro C. Jungerace-gtdb.bsky.social @ace-gtdb.bsky.social · 22/10/2025Our @narjournal.bsky.social manuscript is out! It explores the growth of the GTDB (gtdb.ecogenomic.org) since its inception, as well as updates to the website, methodology, policies, and major taxonomic and nomenclatural changes over the past three years. academic.oup.com/nar/advance-...academic.oup.comGTDB release 10: a complete and systematic taxonomy for 715 230 bacterial and 17 245 archaeal genomesAbstract. The Genome Taxonomy Database (GTDB; https://gtdb.ecogenomic.org) provides a phylogenetically consistent and rank normalized genome-based taxonomy 06946
Reposted by Pedro C. JungerCameron Thrash @jcamthrash.bsky.social · 01/11/2025Ocean-M: an integrated global-scale multi-omics database for marine microbial diversity, function and ecological interactions academic.oup.com/nar/advance-... #jcampubs 🌊academic.oup.comOcean-M: an integrated global-scale multi-omics database for marine microbial diversity, function and ecological interactionsAbstract. Multi-omics analyses have significantly advanced the understanding of complex marine microbial communities and their interactions. Despite notabl 03111