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Microbiome Research Lab, ETH Zürich

@microbiomeresearch.bsky.social
104 followers 52 following 15 posts

The Microbiome Research Lab in the @eth-microbiology.bsky.social - ETH Zurich

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Microbiome Research Lab, ETH Zürich @microbiomeresearch.bsky.social · 19/08/2026
We're at #ISME20! Come and say hi to Marija: 🎤 13:30-14:30 - DEIA Panel on funding policy and inclusion 📊 16:30-17:30 - poster session (PS3.22.386)
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Reposted by Microbiome Research Lab, ETH Zürich
Coral Art Science Consortium @coralartscience.bsky.social · 08/07/2026
Our consortium of scientists and artists invites you to join us in our effort to address the corl reef crisis 🧪🌊🪸🧬🐡🌎🌐🦠https://coralartscience.org/ www.science.org/doi/10.1126/...
science.org
Communicating coral: Art and science for global reef action
Coral reefs are experiencing unprecedented rapid decline. Art can act as a beacon to engage audiences, influence policy, and inspire global action.
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Microbiome Research Lab, ETH Zürich @microbiomeresearch.bsky.social · 23/04/2026
How diverse are E. coli capsules? In collaboration with @mucosalimmunology.bsky.social we mapped this uncharted diversity in >66k genomes with a new tool, kTYPr, paving the way to capsule-targeted therapies and vaccines www.nature.com/articles/s41... @eth-microbiology.bsky.social
nature.com
In silico typing maps the natural diversity of Escherichia coli transporter-dependent capsules - Nature Microbiology
Escherichia coli ABC transporter-dependent capsule gene analysis alongside the development and application of the kTYPr in silico capsule typing tool uncovers E. coli capsule diversity across environm...
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Reposted by Microbiome Research Lab, ETH Zürich
Nature @nature.com · 26/02/2026
Nature research paper: Coral microbiomes as reservoirs of unknown genomic and biosynthetic diversity go.nature.com/3ZYniLb
go.nature.com
Coral microbiomes as reservoirs of unknown genomic and biosynthetic diversity - Nature
Reconstructing microbial genomes from 820 reef-building corals collected at 99 reefs across 32 islands throughout the Pacific Ocean highlights the importance of conserving coral reefs as vital reservoirs of molecular diversity.
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Microbiome Research Lab, ETH Zürich @microbiomeresearch.bsky.social · 25/02/2026
We are thrilled to announce the newest study from our lab (and great collaborators) is out now in @nature.com We show that #coral #microbes are untapped "biosynthetic reservoirs", full of unique natural products. doi.org/10.1038/s415...
doi.org
Coral microbiomes as reservoirs of unknown genomic and biosynthetic diversity - Nature
Reconstructing microbial genomes from 820 reef-building corals collected at 99 reefs across 32 islands throughout the Pacific Ocean highlights the importance of conserving coral reefs as vital reservo...
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Microbiome Research Lab, ETH Zürich @microbiomeresearch.bsky.social · 23/01/2026
🚨We are hiring a Bioinformatician who will be embedded in our lab and work with members of the NCCR Microbiomes at ETH Zurich, as well as the Institute of Microbiology.🚨 nccr-microbiomes.ch jobs.ethz.ch/job/view/JOP...
jobs.ethz.ch
Bioinformatician in Microbiome Research
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Microbiome Research Lab, ETH Zürich @microbiomeresearch.bsky.social · 17/01/2026
It is with great sadness that we mourn the loss of Peer Bork, an exceptionally impactful scientist and leader, and a lifelong mentor full of energy, passion, and warmth. He will be sorely missed. www.embl.org/news/embl-an...
embl.org
In remembrance of Peer Bork  | EMBL
EMBL and its community are deeply saddened by the death of Peer Bork, the organisation’s Interim Director General.
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Microbiome Research Lab, ETH Zürich @microbiomeresearch.bsky.social · 28/11/2025
Another fantastic #zukunftstag where we welcomed a group of enthusiastic kids into our lab for the day to learn about cultivation and helps us pick colonies for identification! Thanks to our great team members @martinsperfeld.bsky.social & Fabienne, Luca and Lisa @eth-microbiology.bsky.social
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Reposted by Microbiome Research Lab, ETH Zürich
Martin Sperfeld @martinsperfeld.bsky.social · 15/11/2025
Stay curious guys and come to the good side, we need you here! Fun at Swiss National Future Day @microbiomeresearch.bsky.social @eth-microbiology.bsky.social @eth-microbiology.bsky.social. Most legit question of the day: “Wait… you have a pipetting robot, so why do we have to pipette by hand?”
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Microbiome Research Lab, ETH Zürich @microbiomeresearch.bsky.social · 28/11/2025
Mirusviruses are predicted to reproduce in the nuclei of unicellular eukaryotes Very happy that members of our lab could contribute to this! #virus #ecoevo www.nature.com/articles/s41...
nature.com
Widespread and intron-rich mirusviruses are predicted to reproduce in nuclei of unicellular eukaryotes - Nature Microbiology
Environmental metagenomic explorations show that Mirusviricota lineages lack essential replication and transcription genes and contain spliceosomal introns, suggesting nuclear reproduction.
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Reposted by Microbiome Research Lab, ETH Zürich
Department of Biology, ETH Zurich @eth-dbiol.bsky.social · 03/11/2025
Dr. Fabienne Wiederkehr (Postdoc in der Gruppe von Prof. Shinichi Sunagawa, Institut für Mikrobiologie, D-BIOL) gibt im "Wissenschaftsmagazin" von SRF als Expertin auf diesem Gebiet Auskunft zu hitzeresistenten Korallen im Korallendreieck in Indonesien. www.srf.ch/audio/wissen...
srf.ch
Korallen trotzen Hitzestress
In einigen Regionen der Welt sind Korallen hitzeresistenter als anderswo. Was ist das Geheimnis dieser Riffe? Zudem: Wir begleiten einen Mars-Rover im Sinkflug. Und: Die Internationale Raumstation ISS...
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Microbiome Research Lab, ETH Zürich @microbiomeresearch.bsky.social · 04/11/2025
Interessierst du dich für Korallenriffe und dafür, wie es ihnen im Klimawandel ergeht? Eine Postdoktorandin in unserem Labor, Fabienne Wiederkehr, wurde kürzlich eingeladen, ihre Einblicke diesbezüglich im Radio zu teilen. Höre es dir hier an: www.srf.ch/play/radio/r... #corals #coralreef
srf.ch
Korallen trotzen Hitzestress
In einigen Regionen der Welt sind Korallen hitzeresistenter als anderswo. Was ist das Geheimnis dieser Riffe? Zudem: Wir begleiten einen Mars-Rover im Sinkflug. Und: Die Internationale Raumstation ISS...
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Microbiome Research Lab, ETH Zürich @microbiomeresearch.bsky.social · 13/09/2025
🚨New preprint from the lab🚨 We present a transcriptomic, marker gene-based growth classifier that predicts the growth states of bacterial strains from different phyla cultivated in diverse conditions. #MicroSky #MicroEcoEvo #MicroEco #Microbiology www.biorxiv.org/content/10.1...
biorxiv.org
Transcriptomic profiles of single-copy marker genes enable predicting bacterial growth states in microbial communities
Studying microbial community dynamics is fundamental to better understand ecosystem stability, resilience and environmental change. Community composition changes with the growth of individual members,...
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Microbiome Research Lab, ETH Zürich @microbiomeresearch.bsky.social · 13/09/2025
🚨Check out our latest preprint on a new approach to assess and monitor #biodiversity globally, applicable across vast ecological scales from holobionts to cross-ecosystems🚨 #MicroSky #MicroEcoEvo #conservation www.biorxiv.org/content/10.1...
biorxiv.org
The JEDI marker as a universal measure of planetary biodiversity
Despite its critical importance in the formation and maintenance of ecosystems and homeostasis on Earth, biodiversity remains a complex and non-unified concept. Consequently, standards for measuring g...
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Reposted by Microbiome Research Lab, ETH Zürich
BlueRemediomics @blueremediomics.bsky.social · 10/09/2025
🎙️📷 We spoke with #BlueRemediomics partner Martin Alessandrini from @fondationtaraocean.bsky.social who focuses on ocean advocacy and international cooperation. Watch the video with Martin below! 👉 Read the interview here: blueremediomics.eu/the-blue-bio...
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Microbiome Research Lab, ETH Zürich @microbiomeresearch.bsky.social · 29/08/2025
🚨New preprint from the lab 🚨 We demonstrate the effectiveness and applicability of assessing tree-of-life scale biodiversity across ecological scales using a single pair of PCR primers! The JEDI marker can serve to greatly enhance current biodiv. assessments www.biorxiv.org/content/10.1...
biorxiv.org
The JEDI marker as a universal measure of planetary biodiversity
Despite its critical importance in the formation and maintenance of ecosystems and homeostasis on Earth, biodiversity remains a complex and non-unified concept. Consequently, standards for measuring g...
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Microbiome Research Lab, ETH Zürich @microbiomeresearch.bsky.social · 21/07/2025
Great to see the latest contribution from some of our team is out - Extensive data mining uncovers novel diversity among members of the rare biosphere within the Thermoplasmatota microbiomejournal.biomedcentral.com/articles/10....
microbiomejournal.biomedcentral.com
Extensive data mining uncovers novel diversity among members of the rare biosphere within the Thermoplasmatota - Microbiome
Background Rare species, especially of the marine sedimentary biosphere, have long been overlooked owing to the complexity of sediment microbial communities, their sporadic temporal and patchy spatial...
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Microbiome Research Lab, ETH Zürich @microbiomeresearch.bsky.social · 21/07/2025
It has been a long process but we are very excited to finally have our own #aquarium up and running and happy to see the newest members of the lab are settling in nicely 🐠🪸
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Microbiome Research Lab, ETH Zürich @microbiomeresearch.bsky.social · 13/06/2025
🚨Latest work from our lab is out!🚨 Led by our recently graduated PhD candidate Fabienne Wiederkehr - this study investigates the impact of host-level #biodiversity and habitat complexity on #coral reef-associated #microbiome dynamics - academic.oup.com/ismecommun/a...
academic.oup.com
Host-level biodiversity shapes the dynamics and networks within the coral reef microbiome
Abstract. Coral reefs face severe threats from human activity, resulting in drastic biodiversity loss. Despite the urgency of safeguarding these ecosystems
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Reposted by Microbiome Research Lab, ETH Zürich
Taylor priest @taylorpriest.bsky.social · 13/06/2025
Excited to announce that our study on the impact of host-level #biodiversity and habitat complexity on shaping #coral reef-associated #microbiome dynamics has been accepted in ISME Communications - @isme-microbes.bsky.social @microbiomeresearch.bsky.social academic.oup.com/ismecommun/a...
academic.oup.com
Host-level biodiversity shapes the dynamics and networks within the coral reef microbiome
Abstract. Coral reefs face severe threats from human activity, resulting in drastic biodiversity loss. Despite the urgency of safeguarding these ecosystems
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Reposted by Microbiome Research Lab, ETH Zürich
EMBLtrec @embltrec.bsky.social · 30/04/2025
The Arctic is threatened by global heating and pollution: @taraoceans-science.bsky.social polar station will both lock into ice and float on water to support researchers in understanding these threats. TREC's Thomas Haize attended the vessel's inauguration in Lorient and shared these great pics!
Inside the Tara Polar Station cabin looking out over ocean in FranceA view of the Tara Polar Station sitting in Lorient harbourA picture of the Tara Polar Station from the outside as it sits in Lorient harbourA picture of TREC's Thomas Haize in front of the Tara Polar Station in Lorient harbour
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Microbiome Research Lab, ETH Zürich @microbiomeresearch.bsky.social · 15/04/2025
It took us a little while to get here but we are excited to now be a part of the @bsky.app community! We are a research lab at ETH Zurich that studies the diversity, dynamics and ecology of microbiomes across different ecosystems, with a particular focus on the oceans
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