iiinova — where your digital self keeps evolving

Reposted by Florian Trigodet

A. Murat Eren (Meren) @merenbey.bsky.social · 20/11/2025

We have a date for the free-to-attend #anvio workshop and ECR Symposium for 2026, and we look forward to meeting you at the @hifmb.de in Oldenburg, Germany! Please find more information on the venue, program, and the application form here, and spread the word 😇 anvio.org/workshops/20...

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Reposted by Florian Trigodet

Daan Speth @daanspeth.bsky.social · 10/06/2025

I'm happy to announce the latest release of the GlobDB, available at globdb.org. The GlobDB is a database of "species dereplicated" microbial genomes, and as of release 226 contains twice the number of species-representative genomes (306,260) than the latest GTDB release.

globdb.org

home | GlobDB

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Reposted by Florian Trigodet

A. Murat Eren (Meren) @merenbey.bsky.social · 05/06/2025

We have a new 3-year postdoc position in our group at the @hifmb.de to study plasmids and plasmids systems of the marine environment to survey their utility in microbial responses to environmental change. Please see the official job ad here, and spread the word: jobs.awi.de/Vacancies/20...

jobs.awi.de

PostDoc in ecology and evolution of plasmids in polar waters at HIFMB (f/d/m)

Layout AWI HIPP extern, englisch

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Florian Trigodet @floriantrigodet.bsky.social · 28/04/2025

I am very happy (and anxious) to share with you our most recent work in which we evaluated four of the most popular long-read assemblers, www.biorxiv.org/content/10.1... and tell you just a little bit about it in the following 🧵

biorxiv.org

Assemblies of long-read metagenomes suffer from diverse errors

Genomes from metagenomes have revolutionised our understanding of microbial diversity, ecology, and evolution, propelling advances in basic science, biomedicine, and biotechnology. Assembly algorithms...

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Reposted by Florian Trigodet

Alex Crits-Christoph @acritschristoph.bsky.social · 25/04/2025

Unique investigation of some errors in long read assemblers. In particular these remarkably chimeric contigs are 😱, if rare.... Improving long read assemblers is definitely the space to be in when it comes to the future of metagenomics, as short reads won't be part of it 😉

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Reposted by Florian Trigodet

A. Murat Eren (Meren) @merenbey.bsky.social · 10/03/2025

A blog post on the #anvio workshop that took place last week at the @hifmb.de in Oldenburg with photographs and participant survey results 😇 anvio.org/blog/oldenbu...

anvio.org

Photos and survey results form the anvi'o workshop and ECR symposium at Oldenburg

Hither shalt thou find likenesses trapped in time, and the opinions of those who did attend this noble workshop

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Reposted by Florian Trigodet

A. Murat Eren (Meren) @merenbey.bsky.social · 17/12/2023

A reminder for ECRs who are looking for an opportunity to form their own group to study contemporary questions in marine sciences in Germany with 5-years of support: hifmb.de/focus-group-...

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