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Kenny Kim

@nextstrain.bsky.social
839 followers 886 following 32 posts

Currently looking for postdoc position. PhD candidate in Robinson-Rechavi Group, University of Lausanne 🇨🇭Studying moulting and evolution of arthropods. 🐞🐝🐛🦋🦐🦀 #bioinformatics #genomics #evolution #biology orcid.org/0000-0001-6292-9948

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Reposted by Kenny Kim
Harriet B. Drage @harriedrage.bsky.social · 07/09/2026
Interested in fossil arthropods, palaeoecology, dispersal, and interesting methods? 🦀 🌎 I'm hiring a 4-year, fully funded PhD student at the University of Geneva as part of my European Research Council (ERC) grant. Deadline: 16th October. Reach out if any questions! www.unige.ch/sciences/ter...
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Alex Wild @alexwild.bsky.social · 27/08/2026
The new transitional insect/crustacean fossil might not look very insectlike, if you think of modern insects like butterflies and beetles, but check out its reconstruction (left) next to a photo of the oldest living lineage of extant insects, the bristetails (right). www.science.org/content/arti...
Paleo art by artist Chao Tan showing an orange, lobster-like animal standing on a rock above water.Macro photo of a silvery, cylindrical insect, a jumping bristletail, standing on sand.
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c0nc0rdance @c0nc0rdance.bsky.social · 04/09/2026
This tiny crab captured by Pedro Valencia of Blackwater Cozumel has me learning about crab life-cycles. Prepare for some vocabulary (& errors)! This is a swimming stage called a 'megalopa'. The furious tail structures moving a mile a minute are 'pleopods' or swimmerets. (📷: pedrovalenciam on IG)
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Genome Biology and Evolution @genomebiolevol.bsky.social · 04/09/2026
Kim et al. investigate the evolutionary conservation of molting gene expression across five representative pancrustaceans, showing that some genes active in molting are shared between these species, while most are different. 🔗 academic.oup.com/gbe/article/... #societyjournal #genome #evolution
GBE | Molting in Pancrustacea Is Characterized by Both Deeply Conserved and Recently Evolved Gene Modules

Photo of a molting Scylla paramamosain taken from Figure 1 of Qiao et al 2022 (https://doi.org/10.3389/fmars.2022.971648) used under the Creative Commons Attribution License (CC BY 4.0).
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Isabel Almudi @isabelalmudi.bsky.social · 07/08/2026
What happens when evolution adds an extra pair of eyes? Male mayflies evolve an extra pair of dorsal compound eyes, the Turbanate eyes, thought to help males detect females during mating swarms. we have investigate how this remarkable evolutionary novelty develops. www.biorxiv.org/content/10.6...
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Timothy Fuqua @timothyfuqua.bsky.social · 19/08/2026
@vakirlis.bsky.social and I are proposing a new term in the de-novo genes / molecular evolution cinematic universe. The term is: "Emergence Bias" and our perspective piece describing it was published in @genomebiolevol.bsky.social today! So, what is an emergence bias? (1/7)
academic.oup.com
Emergence Biases in Molecular Evolution
Abstract. Biases in molecular evolution can significantly influence evolutionary trajectories. They have been described in a variety of contexts, such as d
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Matt Bertone @bertonemyia.bsky.social · 21/08/2026
That's not excessive. THIS is excessive:
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Rob Waterhouse @rmwaterhouse.bsky.social · 27/07/2026
Hot off the press @official-smbe.bsky.social MBE - a phylum-wide assessment to systematically evaluate, refine, and revise current understanding of the evolutionary dynamics of the #arthropod moulting genetic toolkit! academic.oup.com/mbe/advance-...
academic.oup.com
Evolutionary dynamics of the arthropod moulting machinery
Abstract. Exoskeletons define arthropods, providing support for segmented bodies and appendages while protecting against environmental stress and predation
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Alexander Lees @alexanderlees.bsky.social · 13/07/2026
Our new commentary rdcu.be/ftx6h in @natecoevo.nature.com written with folks from @inaturalist.bsky.social and @cornellbirds.bsky.social shows that use of AI to manipulate existing or create new wildlife images undermines the huge value of vast citizen science databases. 🌍🪰🪶 #Ornithology 🧵 1/10
rdcu.be
Citizen science platforms must mitigate against the threat of generative AI
Nature Ecology & Evolution - Citizen science platforms must mitigate against the threat of generative AI
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Marine Biological Laboratory @mblscience.bsky.social · 20/06/2026
Happy #WorldHorseshoeCrabDay!
 These spinning #horseshoecrab (Limulus polyphemus) embryos are developing inside their eggs, just weeks away from hatching. Despite their name, horseshoe crabs are closer relatives of spiders and scorpions than crustaceans.
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Mike Dorrity @mwdorr.bsky.social · 19/06/2026
First pre-print from the lab, a collaborative effort led by Jess Bourn @bournsupremacy.bsky.social, a fantastic PhD in my group. We resolve a key problem in development + evolution: how do we quantify heterochrony and link temporal variation to phenotype? www.biorxiv.org/content/10.6...
biorxiv.org
Quantitative mapping of heterochrony to species-specific phenotypes
The genetic program of animal development is conserved, but its rate of execution varies across species. Heterochrony, shifts in the relative timing of developmental events, generates phenotypic varia...
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bioRxiv Evolutionary Biology @biorxiv-evobio.bsky.social · 08/05/2026
Gene family evolutionary dynamics reveal convergent genomic signatures in pancrustacean metamorphosis www.biorxiv.org/content/10.64898/20…
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Rob Waterhouse @rmwaterhouse.bsky.social · 25/03/2026
We present TaxonMatch, a tool designed to align taxonomic names, resolve synonymy, and correct typographical and structural inconsistencies across species name databases www.biorxiv.org/content/10.6... #biodiversity #taxonomy #bioinformatics
biorxiv.org
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Kenny Kim @nextstrain.bsky.social · 28/02/2026
New preprint!! 🌟📝 Can we tell if a horseshoe crab will moult ? Will it moult tomorrow or maybe in a week? 🤔👀 In this study, we developed a simple and non-invasive approach in determining the moult stage of the Atlantic #horseshoe crab by looking at key structures. #inverts #science
Moulting horseshoe crab
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Youjin Shin | 신유진 @helloeujin.bsky.social · 27/02/2026
🎮 pokemon tree of life for pokémon's 30th anniversary, explore a visualization and field guide to 1,000+ pokémon. what inspired them, where they came from, and how they connect. 포켓몬 30주년, 1,000개 이상의 포켓몬을 시각화했습니다! ➡️ str.sg/viz-poke30
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Marc Robinson-Rechavi @marcrr.ecoevo.social.ap.brid.gy · 20/02/2026
From our project on arthropod moulting, see also this great paper
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Kenny Kim @nextstrain.bsky.social · 20/02/2026
New Preprint!! 🦐🪰🦀 In this study we compared moulting gene expression across insects and crustaceans. #insects #crustaceans Thread ⬇️ (1/6) www.biorxiv.org/content/10.6...
biorxiv.org
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Kenny Kim @nextstrain.bsky.social · 21/12/2025
Just saw a video of a molting nauplius posted on reddit. 🤩🦀 #crustmas www.reddit.com/r/microscopy...
Molting nauplius
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Current Biology @currentbiology.bsky.social · 19/12/2025
HAPPY HOLIDAYS TO ALL OF YOU!🎄✨
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PHD Comics @phdcomics.com · 19/12/2025
Christmas miracle, anyone?
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Kenny Kim @nextstrain.bsky.social · 19/12/2025
Triops and their moults. #crustmas 🧪🎄
Triops Triops exuviaTriops exuvia under microscopeTriops
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Rob Waterhouse @rmwaterhouse.bsky.social · 08/12/2025
A new study shows that over 90% of insect biomass declines are driven by shrinking species numbers, posing a risk to ecosystem function. www.idiv.de/majority-of-... #biodiversity
idiv.de
Majority of local insect biomass decline linked to species loss
A new study shows that over 90% of insect biomass declines are driven by shrinking species numbers, posing a risk to ecosystem function.
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Kenny Kim @nextstrain.bsky.social · 03/12/2025
😯 🦀 🦀
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Stephen Turner @stephenturner.us · 30/11/2025
RegEvol: detection of directional selection in regulatory sequences through phenotypic predictions and phenotype-to-fitness functions www.biorxiv.org/content/10.1... 🧬🖥️🧪 github.com/mrrlab/RegEvol
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Max Farnworth @maxfarnworth.bsky.social · 10/11/2025
link.springer.com/article/10.1... @ebablab.bsky.social and I helped a bit in this really informative article by Robin Grob in the el Jundi lab on spatial orientation strategies in Lepidoptera. Have a read :-)
link.springer.com
The diversity of lepidopteran spatial orientation strategies – neuronal mechanisms and emerging challenges in a changing world - Journal of Comparative Physiology A
The Lepidoptera, butterflies and moths, display an astonishing diversity of spatial orientation strategies essential for survival, reproduction, and ecological success. These spatial orientation strat...
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Kenny Kim @nextstrain.bsky.social · 10/11/2025
👏👏
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Emily Troyer @fishfetisher.bsky.social · 22/10/2025
Why are some species smaller than a paperclip while others grow longer than a school bus? How is body size evolution governed in animals? Out now in @pnas.org we tackle these longstanding questions through a genetic lens using my favorite group of fishes as our model!! www.pnas.org/doi/10.1073/...
pnas.org
Parallel shifts in differential gene expression reveal convergent miniaturization in fishes | PNAS
Body size variation in vertebrates is a complex polygenic trait, tightly correlated with numerous aspects of a species’ biology, ecology, and physi...
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Christophe Dessimoz @dessimoz.bsky.social · 23/10/2025
Our lab has published a couple of major papers in the past few months, which I would like to highlight in this thread! 🧵
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Michael Hothorn @structplantbio.bsky.social · 17/10/2025
A lot of pressure on the different grant schemes, and pretty much independent of career stage.
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Peter Mulhair @petermulhair.bsky.social · 17/10/2025
Latest work out today in @currentbiology.bsky.social We find the fly development gene bicoid is much older than previously thought (~20 million yrs older!) 🪰🧬 To pinpoint its origins we tackled the Diptera phylogeny, providing some resolution (many open questions remain). 🔗 tinyurl.com/2vyuevpy
cell.com
Revised evolutionary relationships within Brachycera and the early origin of bicoid in flies
Mulhair et al. uncover a functional bicoid in non-cyclorrhaphan flies, pushing the gene's origin back by ∼20 million years. Reassessing the Diptera phylogeny using the largest dataset to date permits ...
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MEPGT @mepgt.bsky.social · 15/10/2025
A very nice paper! @naturalselection.bsky.social Congrats!!!👍💪 Reference genome bias in light of species-specific chromosomal reorganization and translocations
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Natalia (娜塔莉) @wrycritic.bsky.social · 27/09/2025
And that's how you integrate digital elements into an exhibition. Part of the temporary "China's Dinosaur World" at the Shanghai Natural History Museum, China. Closing this November. Video source: Shanghai Let's Meet
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Pascal Mamassian @mamassian.bsky.social · 24/09/2025
A nice shift in perceived colour between central and peripheral vision. The fixated disc looks purple while the others look blue. The effect presumably comes from the absence of S-cones in the fovea. From Hinnerk Schulz-Hildebrandt: arxiv.org/pdf/2509.115...
An array of 9 purple discs on a blue background. Figure from Hinnerk Schulz-Hildebrandt.
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c0nc0rdance @c0nc0rdance.bsky.social · 17/09/2025
The buff-tip moth (Phalera bucephala) has mastered a very particular kind of camouflage. When they close their wings up, they resemble a broken twig. Native to large parts of Europe, there's regional pattern variation that reflects the local tree species. This one best resembles birch twigs?
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Darren Obbard @darrenobbard.bsky.social · 16/09/2025
Another preprint from @pankajd.bsky.social ! www.biorxiv.org/content/10.1...
biorxiv.org
Predictors of protein evolution in the drosophilid immune system
The evolutionary dynamics of immune genes are shaped by diverse selective pressures, yet the relative roles of gene-level traits, functional specialization, and pathway context remain poorly understoo...
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James Bonfield @jbonfield.bsky.social · 15/09/2025
Heads up: ignore samtools dot org, similarly minimap2 dot com and likely others. It's owned by a known phishing site and while the binaries they offer look valid currently (but note they may be serving us different binaries to others), that could change. Ie: it's not us (Samtools team)! Be warned
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AnniZLab: [🦠, 🧬 , ✨] @annizlab.bsky.social · 15/09/2025
X-Mapper 🦠🧬🧪 - a sequence aligner developed for microbes, now on Bioconda! 🚀 • 11–24× fewer suboptimal alignments (same for human genome) • 3–579× lower inconsistency • improves on ~30% of reads aligned to non-target species github.com/mathjeff/map... bioconda.github.io/recipes/x-ma... #microsky
Alignment algorithms represent a balance between speed and accuracy. We evaluated this balance across aligners, with accuracy measured by suboptimal alignments. We found that the relationship between alignment time (with 30 threads) and suboptimal alignment rates exhibits diminishing returns, where X-Mapper stands out as an outlier, offering the highest accuracy with competitive speed.
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Yann Dussert @yanndussert.bsky.social · 12/09/2025
Our annotated chromosome(ish)-scale assembly of the genome of the terrestrial isopod Armadillidium vulgare, the common pillbug, is available on NCBI: www.ncbi.nlm.nih.gov/datasets/gen... Work carried out at Ecologie et Biologie des Interactions (EBI) lab in Poitiers.
Three Armadillidium vulgare individuals
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The Palaeontological Association @thepalass.bsky.social · 10/09/2025
⚠️ We’re excited to announce our invited speakers for the #PalAss Annual Meeting! 🎉 🔗 Registration link ⬇️ palass.org/annual-meeti... #conference #uk #palaeontology #meeting
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Science Magazine @science.org · 05/09/2025
“Just when you think you’ve seen it all, social insects reveal another surprise.” scim.ag/47sVFyS
scim.ag
Ant queen lays eggs that hatch into two species
Bizarre discovery of interspecies cloning “almost impossible to believe,” biologists say
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Kenny Kim @nextstrain.bsky.social · 07/09/2025
Lunar eclipse seen from Switzerland🌒
Lunar eclipse
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What a week, huh? all Wednesdays @whataweekhuh.bsky.social · 03/09/2025
Captain Haddock looking very frazzled, saying, “What a week, huh?”
Tintin leans into the frame and says, “Captain, it’s Wednesday.”
Snowy is very excited about the drink he has found.
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Marc Robinson-Rechavi @marcrr.bsky.social · 21/08/2025
Our MoultDB project, which combines fossils, phenotypic, and genomic data about arthropod moulting, highlighted on the @sib.swiss Expasy page: www.expasy.org
expasy.org
Expasy - SIB Swiss Institute of Bioinformatics
Since 1993 Expasy has been the reference of Bioinformatics Resources. Learn everything about Expasy
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Marc Robinson-Rechavi @marcrr.bsky.social · 13/08/2025
Like for #ismbeccb2025, I'll be live-posting #ESEB2025 from my Mastodon account, which you can follow there or on the bridging account quoted (the "live" will sometimes be a bit delayed).
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Andreas Wallberg @awallberg.bsky.social · 14/08/2025
I am announcing an open PhD position involving bioinformatics, genomics and machine learning to work on functional prediction of adaptive genetic variation in krill and herring! www.uu.se/en/about-uu/... Going to #ESEB2025 @eseb.bsky.social ? Find me in poster session 1 for a chat!
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Mark A. Hanson @hansonmark.bsky.social · 14/08/2025
A reminder you/your lab can support FlyBase at Cambridge through the following link. Every bit helps. Please share if you yourself can't donate. www.philanthropy.cam.ac.uk/give-to-camb...
philanthropy.cam.ac.uk
Drosophila Genetic Database
The Drosophila Genetic Database, FlyBase, is on the brink of collapse due to the sudden termination of the FlyBase NIH grant, which includes salaries for 5 literature curators based at the University ...
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Faine Greenwood @faineg.com · 30/07/2025
amazing things are happening in the shrimp rodeo community www.reddit.com/r/ShrimpsIsB...
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Asher Elbein @asherelbein.bsky.social · 23/07/2025
Proud to make my National Geographic debut with this incredible discovery: an extremely weird little guy with independently-evolved "feathers" that solves a longstanding Triassic mystery and makes one of the period's oddest families even stranger
nationalgeographic.com
Crested Triassic Reptile
Mirasaura grauvogeli had a featherlike crest and a tail like a monkey. “It's been a long time since I've been so blown away by a new fossil discovery.”
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Sarah McAnulty, Ph.D. @sarahmackattack.bsky.social · 23/07/2025
Ever see a spotted lantern fly entering their final form?
A spotted lantern fly hatches out of its former body, all white and pink and red
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Christophe Dessimoz @dessimoz.bsky.social · 22/07/2025
Fantastic keynote by @marcrr.bsky.social at the joint EvolCompGen-Function session of #ISMBECCB2025 on the power of (curated & FAIR) gene expression data from @bgee.org to study functional retention and innovation across animals, summarising 15+ yrs of work Paper: www.unil.ch/dee/en/home/...
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