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Murat Sunbul

@murat-sunbul.bsky.social
99 followers 148 following 2 posts

Group leader @UniHeidelberg, @IPMB; Chemical Biologist; RNA imaging 🦠 Super-resolution 🔬Fluorescent probes 🌈Alumni |@UChicago Group Website: www.sunbulgroup.com

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Reposted by Murat Sunbul
Bryan Dickinson @chembiobryan.bsky.social · 19/05/2026
See our recent review on proximity chemistry to study RNA biology. If you are interested in getting into the field, this is an easy way to get caught up on the chemistry and technology: www.sciencedirect.com/science/arti...
sciencedirect.com
Proximity chemistries to study RNA biology at the subcellular scale
RNAs preferentially localize across virtually every subcellular compartment, from membrane-bound organelles, membrane-less condensates and even the ce…
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Reposted by Murat Sunbul
Sabrina Zappone @szappone.bsky.social · 18/05/2026
Last preprint from @vicidominilab.bsky.social with @murat-sunbul.bsky.social! First live-cell diffusivity analysis of lncRNA NEAT1-1, using 🧬biRhoBAST and 🔬FFS. Beyond paraspeckles and microspeckles, we resolve distinct nanoscale complexes in the nucleoplasm. www.biorxiv.org/content/10.6...
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Reposted by Murat Sunbul
Yasin Dagdas @plantophagy.bsky.social · 31/03/2026
New #preprint 😍‼️ led by 2 incredible postdocs @ninizhani.bsky.social & Ranj Papareddy: transforming #UFMylation from a local ribosome rescue pathway to systems level regulator of mRNA splicing www.biorxiv.org/content/10.6... A short 🧵
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Reposted by Murat Sunbul
Olivier Duss @olivierduss.bsky.social · 01/11/2025
Excited to share my first PhD student’s @biorxivpreprint.bsky.social! Tracking 5 dyes simultaneously Kavan Gor @embl.org tracks nascent #RNA folding during #ribosome assembly to correlate structural with functional information on single RNA molecules! Check it out! www.biorxiv.org/content/10.1...
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Murat Sunbul @murat-sunbul.bsky.social · 07/11/2025
Congratulations again, Xiao-Xiao! It is a pleasure to host you as a Humboldt Research Fellow @humboldt-foundation.de. Looking forward to the exciting science ahead!
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Reposted by Murat Sunbul
Nature Chemical Biology @natchembio.nature.com · 04/11/2025
A new Review by Agnese Nicoli and Michelle Frei examines the progress in developing synthetic small-molecule fluorophores and how these in combination with innovative labeling strategies can advance chemical biology www.nature.com/articles/s41...
nature.com
Synthetic fluorophores for live-cell fluorescence microscopy and biosensing - Nature Chemical Biology
Performing live-cell microscopy experiments with high spatial and temporal resolution requires fluorophores with highly optimized properties. This Review examines the progress in developing synthetic ...
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Reposted by Murat Sunbul
Nature Chemical Biology @natchembio.nature.com · 01/08/2025
A new paper from @aliceyting.bsky.social reports on LaccID, an engineered laccase, that enables hydrogen peroxide-free proximity labeling and electron microscopy of cell surfaces www.nature.com/articles/s41...
nature.com
Directed evolution of LaccID for cell surface proximity labeling and electron microscopy - Nature Chemical Biology
LaccID, an engineered laccase, enables hydrogen-peroxide-free proximity labeling and electron microscopy (EM) in mammalian cells. Notably, LaccID is selectively active at the cell surface, enabling th...
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Reposted by Murat Sunbul
Jay Brito Querido @jbquerido.bsky.social · 22/07/2025
Finally out! I’m thrilled to share our new paper (Wolin et al., Cell 2025). This paper describes SPIDR, a high-throughput method for mapping RBP binding sites. By combining #SPIDR with #cryoEM, we identified the exact binding site of LARP1 within the #mRNA channel of the 40S ribosomal subunit.
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Reposted by Murat Sunbul
Kai Johnsson @kjohnsson.bsky.social · 09/07/2025
Teaching an old bacterial protein new tricks: Fast, bright and reversible rhodamine tags for live-cell imaging: www.biorxiv.org/content/10.1... Congratulations to Julian Kompa and the entire team.
biorxiv.org
Fast, Bright and Reversible Rhodamine Tags for Live-Cell Imaging
We present Rho-tag and SiR-tag, engineered protein tags derived from bacterial multidrug-resistance proteins that bind unsubstituted (silicon-) rhodamines with nanomolar affinity, enabling fast, rever...
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Reposted by Murat Sunbul
Dave Shechner @shechnerlab.bsky.social · 30/06/2025
Hello! Ever wonder what's "talking to" your favorite transcript, but were too scared to ask? In our review in @cp-cellreports.bsky.social, @mardakheh.bsky.social and I highlight new RNA-focused tools for discovering RNA interactions across organizational scales. Checkit! tinyurl.com/ydn6e3ac
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Reposted by Murat Sunbul
Nature Methods @natmethods.nature.com · 19/05/2025
Read the News & Views highlighting this work, here! www.nature.com/articles/s41...
nature.com
Bridge to a brighter future in fluorescence imaging - Nature Methods
Bredt’s rule-inspired, bridged bicycle-strengthened fluorescent dyes resist both photobleaching and photoblueing, offering a powerful new toolkit for super-resolution fluorescence microscopy. This inn...
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Reposted by Murat Sunbul
Rita Strack @ritastrack.bsky.social · 06/05/2025
Neat paper in JACS. They use a modified version of RhoBAST to do super-res imaging of demethylation of m6A by FTO pubs.acs.org/doi/10.1021/...
pubs.acs.org
Developments of the mDZ-RhoBAST Probe for Super-Resolution Imaging of FTO Demethylation in Live Cells
Single-molecule localization microscopy (SMLM) provides precise, high-resolution visualization of target biomolecules in cellular imaging. Fluorescent light-up aptamers (FLAPs) offer a versatile appro...
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Reposted by Murat Sunbul
Michelle Frei @michellefrei17.bsky.social · 21/04/2025
Happy to see my Postdoc work out @natbiotech.nature.com. Using HaloTag and synthetic fluorophores instead of FPs enables us to shift the spectral properties of kinase activity reporters (KARs) to the far-red 🔬. Huge thanks to everyone involved @jinzhanglab.bsky.social! www.nature.com/articles/s41...
nature.com
Far-red chemigenetic kinase biosensors enable multiplexed and super-resolved imaging of signaling networks - Nature Biotechnology
Far-red kinase biosensors are applied to image kinase signaling networks at super resolution.
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Reposted by Murat Sunbul
Rita Strack @ritastrack.bsky.social · 18/04/2025
www.nature.com/articles/s41...
nature.com
A highly stable monomeric red fluorescent protein for advanced microscopy - Nature Methods
The red fluorescent protein mScarlet3-H is bright, photostable and very robust to high temperature, chaotropic conditions and oxidative environments. mScarlet3-H works well in correlative light and el...
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Reposted by Murat Sunbul
Nature Biotechnology @natbiotech.nature.com · 18/02/2025
Single-molecule live-cell RNA imaging with CRISPR–Csm - @doudna-lab.bsky.social @qb3-berkeley.bsky.social @innovativegenomics.bsky.social go.nature.com/3EJPKsM
go.nature.com
Single-molecule live-cell RNA imaging with CRISPR–Csm - Nature Biotechnology
Single-molecule live-cell fluorescence in situ hybridization uses an RNA-targeting CRISPR–Csm complex to image and track endogenous RNAs.
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Reposted by Murat Sunbul
Nature @nature.com · 20/02/2025
Nature research paper: De novo design of transmembrane fluorescence-activating proteins go.nature.com/4k2OAZA
go.nature.com
De novo design of transmembrane fluorescence-activating proteins - Nature
A study describes the design of de novo ligand-binding transmembrane proteins, demonstrating their specific binding and activation of fluorogenic ligands.
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